Wall clock time and date at job start Mon Mar 30 2020 01:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00402 * 2 1 4 4 H 1.48497 * 109.46932 * 239.99750 * 3 2 1 5 5 H 1.48497 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46682 * 120.00189 * 3 2 1 7 7 C 1.37883 * 119.99268 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99603 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00200 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47118 * 180.02562 * 9 7 2 11 11 C 1.31479 * 120.00105 * 114.23781 * 10 9 7 12 12 C 1.41987 * 120.91779 * 353.63999 * 11 10 9 13 13 C 1.35648 * 118.59834 * 180.02562 * 12 11 10 14 14 N 1.33772 * 120.41210 * 359.97438 * 13 12 11 15 15 C 1.30412 * 122.03474 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.29128 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47398 * 304.99841 * 16 15 14 18 18 C 1.38237 * 119.99758 * 90.00266 * 17 16 15 19 19 C 1.38238 * 119.99608 * 180.25551 * 18 17 16 20 20 C 1.38237 * 120.00129 * 359.51435 * 19 18 17 21 21 C 1.38237 * 119.99836 * 0.46144 * 20 19 18 22 22 C 1.38232 * 119.99919 * 269.97901 * 17 16 15 23 23 N 1.35660 * 121.41155 * 0.25480 * 15 14 13 24 24 H 0.97005 * 120.30583 * 179.72981 * 23 15 14 25 25 H 0.97003 * 119.99256 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47870 * 60.00125 * 9 7 2 27 27 H 1.09008 * 109.47448 * 300.00098 * 9 7 2 28 28 H 1.07998 * 120.69622 * 0.04676 * 12 11 10 29 29 H 1.07995 * 119.79040 * 180.02562 * 13 12 11 30 30 H 1.09001 * 109.46979 * 184.99570 * 16 15 14 31 31 H 1.09003 * 109.47215 * 65.00494 * 16 15 14 32 32 H 1.07993 * 119.99955 * 359.97438 * 18 17 16 33 33 H 1.08001 * 119.99448 * 179.72197 * 19 18 17 34 34 H 1.07992 * 119.99772 * 180.25773 * 20 19 18 35 35 H 1.07993 * 119.99699 * 179.79211 * 21 20 19 36 36 H 1.08003 * 120.00264 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6961 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0010 9 6 1.2508 -2.4991 -0.0005 10 7 2.2027 -3.6127 -0.0005 11 6 2.2746 -4.4162 1.0377 12 6 1.5379 -4.1466 2.2212 13 6 1.6473 -5.0068 3.2643 14 7 2.4341 -6.0848 3.1733 15 6 3.1196 -6.3521 2.0965 16 6 3.9872 -7.5838 2.0616 17 6 4.9427 -7.5585 3.2266 18 6 4.5791 -8.1308 4.4312 19 6 5.4535 -8.1029 5.5015 20 6 6.6955 -7.5116 5.3641 21 6 7.0592 -6.9397 4.1593 22 6 6.1829 -6.9634 3.0904 23 7 3.0727 -5.5421 1.0093 24 1 3.5922 -5.7542 0.2181 25 1 -0.4849 0.8401 0.0004 26 1 0.6238 -2.5567 -0.8902 27 1 0.6244 -2.5571 0.8897 28 1 0.9035 -3.2752 2.2892 29 1 1.0952 -4.8205 4.1736 30 1 4.5514 -7.6043 1.1292 31 1 3.3593 -8.4725 2.1258 32 1 3.6101 -8.5956 4.5375 33 1 5.1677 -8.5461 6.4440 34 1 7.3802 -7.4935 6.1990 35 1 8.0282 -6.4748 4.0530 36 1 6.4670 -6.5162 2.1493 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362667722.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:46 Heat of formation + Delta-G solvation = 86.110690 kcal Electronic energy + Delta-G solvation = -18948.431041 eV Core-core repulsion = 16011.918499 eV Total energy + Delta-G solvation = -2936.512542 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.55455 -39.16843 -35.44816 -34.09911 -33.23225 -32.09842 -30.98346 -29.73909 -27.32852 -26.81255 -23.47477 -23.28369 -22.64971 -21.66363 -20.05693 -18.00228 -17.01953 -16.89574 -16.24531 -15.59699 -15.51646 -15.14913 -14.56878 -14.48779 -14.19501 -13.52048 -13.33351 -13.16340 -12.71484 -12.59787 -12.29646 -12.02203 -11.72068 -11.33920 -11.11573 -11.03316 -10.78417 -10.73689 -10.13154 -10.00835 -9.47432 -9.20563 -8.99319 -8.86278 -8.59691 -8.02877 -6.80748 -6.02000 -4.07405 1.12590 1.31160 1.36143 2.60044 3.12247 3.32506 3.35628 3.39934 3.69304 4.17130 4.23848 4.44936 4.65316 4.69256 4.89863 4.95525 5.02188 5.20493 5.28938 5.32973 5.43051 5.53759 5.53846 5.85774 5.89037 5.94877 5.97487 6.34640 6.41332 6.42411 6.48500 6.68643 6.89119 7.02263 7.43017 7.53181 7.64519 7.91435 8.29434 8.39359 8.88344 9.11063 9.57627 11.04914 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026334 B = 0.003793 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.003826 B = 7380.251132 C = 7791.354412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.057 3.943 3 Si 0.901 3.099 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.277 1.277 7 C -0.509 4.509 8 H 0.058 0.942 9 C 0.193 3.807 10 N -0.569 5.569 11 C 0.348 3.652 12 C -0.227 4.227 13 C 0.093 3.907 14 N -0.553 5.553 15 C 0.396 3.604 16 C -0.027 4.027 17 C -0.075 4.075 18 C -0.086 4.086 19 C -0.124 4.124 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.112 4.112 23 N -0.620 5.620 24 H 0.411 0.589 25 H 0.263 0.737 26 H 0.041 0.959 27 H 0.009 0.991 28 H 0.153 0.847 29 H 0.149 0.851 30 H 0.094 0.906 31 H 0.110 0.890 32 H 0.127 0.873 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.120 0.880 36 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.410 -18.731 9.193 23.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.548 4.548 8 H 0.076 0.924 9 C 0.066 3.934 10 N -0.292 5.292 11 C 0.075 3.925 12 C -0.253 4.253 13 C -0.042 4.042 14 N -0.278 5.278 15 C 0.128 3.872 16 C -0.066 4.066 17 C -0.076 4.076 18 C -0.104 4.104 19 C -0.142 4.142 20 C -0.139 4.139 21 C -0.141 4.141 22 C -0.130 4.130 23 N -0.246 5.246 24 H 0.248 0.752 25 H 0.073 0.927 26 H 0.058 0.942 27 H 0.027 0.973 28 H 0.170 0.830 29 H 0.166 0.834 30 H 0.113 0.887 31 H 0.128 0.872 32 H 0.145 0.855 33 H 0.139 0.861 34 H 0.136 0.864 35 H 0.138 0.862 36 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 10.384 -18.639 9.071 23.184 hybrid contribution 0.041 1.869 -0.280 1.890 sum 10.426 -16.770 8.790 21.615 Atomic orbital electron populations 1.69944 1.05993 1.27034 1.50712 1.24991 0.94950 0.99276 0.95265 0.86510 0.79455 0.82486 0.78706 1.20112 1.21128 1.20252 1.21105 0.93378 0.89721 1.50611 0.92354 1.19748 0.89980 0.86740 0.96919 1.72187 1.23925 1.08479 1.24615 1.18902 0.91829 0.88466 0.93253 1.22718 1.04711 1.03672 0.94193 1.21960 0.94565 0.89435 0.98237 1.67841 1.14237 1.22995 1.22689 1.22577 0.91594 0.90424 0.82605 1.19559 0.95171 0.93774 0.98069 1.19373 0.93965 0.99371 0.94851 1.21027 0.99027 0.98322 0.92016 1.21142 0.94184 1.00126 0.98740 1.21155 0.96801 0.98449 0.97478 1.21090 0.99706 1.00009 0.93330 1.21075 0.93751 0.98964 0.99249 1.42614 1.43587 1.21815 1.16587 0.75177 0.92716 0.94172 0.97346 0.83003 0.83379 0.88747 0.87219 0.85544 0.86132 0.86355 0.86200 0.86145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.15 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 3 Si 0.90 22.31 29.54 -169.99 -5.02 17.29 16 4 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 7 C -0.51 -15.25 9.39 -34.44 -0.32 -15.58 16 8 H 0.06 1.77 7.81 -52.48 -0.41 1.36 16 9 C 0.19 5.43 5.96 -5.20 -0.03 5.39 16 10 N -0.57 -14.01 10.66 -61.24 -0.65 -14.66 16 11 C 0.35 7.22 7.72 -155.64 -1.20 6.02 16 12 C -0.23 -4.52 9.24 -39.07 -0.36 -4.88 16 13 C 0.09 1.55 11.16 -17.63 -0.20 1.36 16 14 N -0.55 -8.49 9.92 -10.55 -0.10 -8.59 16 15 C 0.40 5.38 7.14 -154.92 -1.11 4.27 16 16 C -0.03 -0.24 5.84 -29.04 -0.17 -0.41 16 17 C -0.07 -0.76 4.91 -104.63 -0.51 -1.27 16 18 C -0.09 -0.85 9.64 -39.58 -0.38 -1.23 16 19 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 20 C -0.12 -1.11 10.05 -39.58 -0.40 -1.51 16 21 C -0.12 -1.19 10.05 -39.58 -0.40 -1.59 16 22 C -0.11 -1.14 9.70 -39.58 -0.38 -1.53 16 23 N -0.62 -9.67 5.42 -9.29 -0.05 -9.72 16 24 H 0.41 5.36 8.65 -40.82 -0.35 5.01 16 25 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 26 H 0.04 1.21 8.14 -51.93 -0.42 0.78 16 27 H 0.01 0.25 5.31 -51.92 -0.28 -0.03 16 28 H 0.15 3.30 5.90 -52.49 -0.31 2.99 16 29 H 0.15 2.10 8.06 -52.49 -0.42 1.67 16 30 H 0.09 0.62 7.84 -51.93 -0.41 0.21 16 31 H 0.11 0.80 8.09 -51.93 -0.42 0.38 16 32 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 33 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 34 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 LS Contribution 314.85 15.07 4.74 4.74 Total: -1.00 -34.63 314.85 -10.58 -45.21 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -4.27 Total: 3.08 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -5.96 Total: -10.93 kcal Atomic # 7 Polarization: -59.32 SS G_CDS: -0.07 Total: -59.39 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -34.63 -10.58 -45.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362667722.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.319 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.578 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds