Wall clock time and date at job start Mon Mar 30 2020 01:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 120.00402 * 2 1 4 4 H 1.48497 * 109.46932 * 239.99750 * 3 2 1 5 5 H 1.48497 * 109.47100 * 0.02562 * 3 2 1 6 6 H 1.48506 * 109.46682 * 120.00189 * 3 2 1 7 7 C 1.37883 * 119.99268 * 180.02562 * 2 1 3 8 8 H 1.08004 * 119.99603 * 179.97438 * 7 2 1 9 9 C 1.50690 * 120.00200 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47118 * 180.02562 * 9 7 2 11 11 C 1.31479 * 120.00105 * 114.23781 * 10 9 7 12 12 C 1.41987 * 120.91779 * 353.63999 * 11 10 9 13 13 C 1.35648 * 118.59834 * 180.02562 * 12 11 10 14 14 N 1.33772 * 120.41210 * 359.97438 * 13 12 11 15 15 C 1.30412 * 122.03474 * 0.02562 * 14 13 12 16 16 C 1.50697 * 119.29128 * 179.97438 * 15 14 13 17 17 C 1.50696 * 109.47398 * 304.99841 * 16 15 14 18 18 C 1.38237 * 119.99758 * 90.00266 * 17 16 15 19 19 C 1.38238 * 119.99608 * 180.25551 * 18 17 16 20 20 C 1.38237 * 120.00129 * 359.51435 * 19 18 17 21 21 C 1.38237 * 119.99836 * 0.46144 * 20 19 18 22 22 C 1.38232 * 119.99919 * 269.97901 * 17 16 15 23 23 N 1.35660 * 121.41155 * 0.25480 * 15 14 13 24 24 H 0.97005 * 120.30583 * 179.72981 * 23 15 14 25 25 H 0.97003 * 119.99256 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47870 * 60.00125 * 9 7 2 27 27 H 1.09008 * 109.47448 * 300.00098 * 9 7 2 28 28 H 1.07998 * 120.69622 * 0.04676 * 12 11 10 29 29 H 1.07995 * 119.79040 * 180.02562 * 13 12 11 30 30 H 1.09001 * 109.46979 * 184.99570 * 16 15 14 31 31 H 1.09003 * 109.47215 * 65.00494 * 16 15 14 32 32 H 1.07993 * 119.99955 * 359.97438 * 18 17 16 33 33 H 1.08001 * 119.99448 * 179.72197 * 19 18 17 34 34 H 1.07992 * 119.99772 * 180.25773 * 20 19 18 35 35 H 1.07993 * 119.99699 * 179.79211 * 21 20 19 36 36 H 1.08003 * 120.00264 * 0.02562 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6961 1.2126 7 6 2.0044 -1.1942 -0.0005 8 1 3.0844 -1.1943 -0.0010 9 6 1.2508 -2.4991 -0.0005 10 7 2.2027 -3.6127 -0.0005 11 6 2.2746 -4.4162 1.0377 12 6 1.5379 -4.1466 2.2212 13 6 1.6473 -5.0068 3.2643 14 7 2.4341 -6.0848 3.1733 15 6 3.1196 -6.3521 2.0965 16 6 3.9872 -7.5838 2.0616 17 6 4.9427 -7.5585 3.2266 18 6 4.5791 -8.1308 4.4312 19 6 5.4535 -8.1029 5.5015 20 6 6.6955 -7.5116 5.3641 21 6 7.0592 -6.9397 4.1593 22 6 6.1829 -6.9634 3.0904 23 7 3.0727 -5.5421 1.0093 24 1 3.5922 -5.7542 0.2181 25 1 -0.4849 0.8401 0.0004 26 1 0.6238 -2.5567 -0.8902 27 1 0.6244 -2.5571 0.8897 28 1 0.9035 -3.2752 2.2892 29 1 1.0952 -4.8205 4.1736 30 1 4.5514 -7.6043 1.1292 31 1 3.3593 -8.4725 2.1258 32 1 3.6101 -8.5956 4.5375 33 1 5.1677 -8.5461 6.4440 34 1 7.3802 -7.4935 6.1990 35 1 8.0282 -6.4748 4.0530 36 1 6.4670 -6.5162 2.1493 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362667722.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:46 Heat of formation + Delta-G solvation = 63.878485 kcal Electronic energy + Delta-G solvation = -18949.395102 eV Core-core repulsion = 16011.918499 eV Total energy + Delta-G solvation = -2937.476603 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.90291 -39.94791 -37.06873 -35.41847 -34.97502 -33.59085 -31.67814 -31.17999 -28.82212 -28.28010 -25.23514 -24.75526 -23.36932 -22.77290 -21.38865 -19.41411 -18.67673 -18.22776 -17.67161 -17.09754 -16.43837 -16.40523 -15.91294 -15.71636 -15.47195 -15.01346 -14.55100 -14.17880 -13.95100 -13.83349 -13.72917 -13.20243 -13.07436 -12.99019 -12.68962 -12.44285 -12.22651 -11.99182 -11.78786 -11.73201 -11.03071 -10.88404 -10.72529 -9.93193 -9.70694 -9.59832 -8.55624 -8.15211 -6.40500 -0.11790 0.47868 0.61945 1.08319 1.34263 1.38303 1.47003 1.76495 2.35259 2.73751 2.89078 3.02624 3.21481 3.72579 3.88452 4.02295 4.09084 4.25062 4.29901 4.35411 4.37886 4.48262 4.68360 4.78029 4.84825 4.95374 5.07110 5.18908 5.20078 5.26430 5.31384 5.62702 5.65115 5.72443 5.75815 5.83448 6.06821 6.16594 6.22629 6.68383 7.03262 7.18433 7.40905 8.82459 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026334 B = 0.003793 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1063.003826 B = 7380.251132 C = 7791.354412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.006 3.994 3 Si 0.974 3.026 4 H -0.268 1.268 5 H -0.272 1.272 6 H -0.269 1.269 7 C -0.536 4.536 8 H 0.047 0.953 9 C 0.211 3.789 10 N -0.623 5.623 11 C 0.368 3.632 12 C -0.291 4.291 13 C 0.141 3.859 14 N -0.561 5.561 15 C 0.414 3.586 16 C -0.023 4.023 17 C -0.088 4.088 18 C -0.095 4.095 19 C -0.133 4.133 20 C -0.127 4.127 21 C -0.138 4.138 22 C -0.127 4.127 23 N -0.605 5.605 24 H 0.426 0.574 25 H 0.269 0.731 26 H 0.001 0.999 27 H -0.006 1.006 28 H 0.122 0.878 29 H 0.178 0.822 30 H 0.125 0.875 31 H 0.138 0.862 32 H 0.136 0.864 33 H 0.138 0.862 34 H 0.136 0.864 35 H 0.132 0.868 36 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.200 -20.282 10.642 25.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.797 3.203 4 H -0.193 1.193 5 H -0.197 1.197 6 H -0.194 1.194 7 C -0.574 4.574 8 H 0.065 0.935 9 C 0.082 3.918 10 N -0.349 5.349 11 C 0.097 3.903 12 C -0.319 4.319 13 C 0.004 3.996 14 N -0.286 5.286 15 C 0.148 3.852 16 C -0.061 4.061 17 C -0.089 4.089 18 C -0.113 4.113 19 C -0.151 4.151 20 C -0.145 4.145 21 C -0.155 4.155 22 C -0.145 4.145 23 N -0.229 5.229 24 H 0.266 0.734 25 H 0.078 0.922 26 H 0.019 0.981 27 H 0.011 0.989 28 H 0.140 0.860 29 H 0.195 0.805 30 H 0.143 0.857 31 H 0.156 0.844 32 H 0.154 0.846 33 H 0.156 0.844 34 H 0.154 0.846 35 H 0.150 0.850 36 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 12.220 -20.264 10.511 25.893 hybrid contribution -0.420 2.040 -0.517 2.146 sum 11.801 -18.225 9.994 23.901 Atomic orbital electron populations 1.70065 1.07585 1.28320 1.50862 1.25954 0.95941 1.03149 0.94254 0.85379 0.78270 0.77560 0.79058 1.19308 1.19714 1.19428 1.21384 0.93019 0.91443 1.51600 0.93474 1.19267 0.90118 0.88043 0.94324 1.72089 1.26036 1.09922 1.26888 1.19151 0.90604 0.88122 0.92456 1.22430 1.08223 1.05331 0.95872 1.22408 0.91914 0.87621 0.97610 1.68056 1.14791 1.22355 1.23374 1.23713 0.90059 0.90463 0.80955 1.19842 0.94955 0.91916 0.99435 1.19468 0.94150 1.00038 0.95230 1.21262 0.99604 0.98337 0.92115 1.21448 0.94165 0.99987 0.99491 1.21468 0.97232 0.97885 0.97953 1.21371 1.00390 1.00236 0.93548 1.21321 0.94120 0.99186 0.99876 1.42730 1.42107 1.20119 1.17981 0.73378 0.92244 0.98080 0.98879 0.85989 0.80544 0.85665 0.84376 0.84592 0.84372 0.84583 0.84995 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.08 13.29 21.45 0.28 -57.79 16 2 C 0.01 0.35 5.46 84.66 0.46 0.81 16 3 Si 0.97 46.48 29.54 68.60 2.03 48.51 16 4 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 5 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 6 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 7 C -0.54 -33.65 9.39 25.60 0.24 -33.41 16 8 H 0.05 2.97 7.81 -2.91 -0.02 2.95 16 9 C 0.21 12.69 5.96 85.63 0.51 13.20 16 10 N -0.62 -32.25 10.66 -347.67 -3.71 -35.96 16 11 C 0.37 15.58 7.72 134.38 1.04 16.61 16 12 C -0.29 -11.93 9.24 22.60 0.21 -11.72 16 13 C 0.14 4.52 11.16 83.80 0.94 5.45 16 14 N -0.56 -15.63 9.92 -187.28 -1.86 -17.49 16 15 C 0.41 10.01 7.14 137.96 0.99 11.00 16 16 C -0.02 -0.32 5.84 29.10 0.17 -0.15 16 17 C -0.09 -1.50 4.91 -19.87 -0.10 -1.59 16 18 C -0.10 -1.58 9.64 22.27 0.21 -1.37 16 19 C -0.13 -2.10 10.05 22.27 0.22 -1.87 16 20 C -0.13 -2.02 10.05 22.27 0.22 -1.80 16 21 C -0.14 -2.34 10.05 22.27 0.22 -2.12 16 22 C -0.13 -2.25 9.70 22.27 0.22 -2.03 16 23 N -0.60 -17.90 5.42 -183.31 -0.99 -18.90 16 24 H 0.43 10.25 8.65 -92.70 -0.80 9.45 16 25 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 26 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 27 H -0.01 -0.39 5.31 -2.38 -0.01 -0.41 16 28 H 0.12 5.73 5.90 -2.91 -0.02 5.71 16 29 H 0.18 4.57 8.06 -2.91 -0.02 4.55 16 30 H 0.13 1.06 7.84 -2.39 -0.02 1.04 16 31 H 0.14 1.32 8.09 -2.39 -0.02 1.30 16 32 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 33 H 0.14 1.59 8.06 -2.91 -0.02 1.57 16 34 H 0.14 1.58 8.06 -2.91 -0.02 1.55 16 35 H 0.13 1.81 8.06 -2.91 -0.02 1.79 16 36 H 0.13 1.97 8.06 -2.91 -0.02 1.94 16 Total: -1.00 -78.99 314.85 1.60 -77.39 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 0.30 Total: 13.23 kcal Atomic # 6 Polarization: -14.55 SS G_CDS: 5.55 Total: -9.00 kcal Atomic # 7 Polarization: -123.86 SS G_CDS: -6.27 Total: -130.13 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 2.03 Total: 48.51 kcal Total: -78.99 1.60 -77.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362667722.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.270 kcal (2) G-P(sol) polarization free energy of solvation -78.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds