Wall clock time and date at job start Mon Mar 30 2020 01:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86800 * 119.99949 * 2 1 4 4 H 1.48501 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46949 * 299.99725 * 3 2 1 6 6 H 1.48491 * 109.47550 * 60.00038 * 3 2 1 7 7 C 1.39857 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00293 * 197.98094 * 7 2 1 9 9 C 1.41143 * 120.00375 * 17.97606 * 7 2 1 10 10 C 1.40880 * 120.15790 * 204.60679 * 9 7 2 11 11 C 1.36338 * 119.83853 * 179.97438 * 10 9 7 12 12 C 1.39567 * 120.15956 * 0.02783 * 11 10 9 13 13 N 1.38858 * 119.84533 * 179.97438 * 12 11 10 14 14 C 1.46491 * 120.00405 * 180.02562 * 13 12 11 15 15 H 1.08998 * 110.42711 * 327.51785 * 14 13 12 16 16 C 1.54540 * 110.47954 * 205.00421 * 14 13 12 17 17 C 1.54388 * 101.80230 * 266.32100 * 16 14 13 18 18 N 1.47064 * 105.50102 * 334.32283 * 17 16 14 19 19 C 1.37200 * 141.58225 * 196.96234 * 18 17 16 20 20 C 1.34564 * 106.83618 * 180.24490 * 19 18 17 21 21 N 1.34005 * 108.02853 * 359.97057 * 20 19 18 22 22 C 1.30904 * 109.30595 * 359.89874 * 21 20 19 23 23 C 1.39566 * 120.31658 * 0.23047 * 12 11 10 24 24 C 1.36347 * 120.16046 * 359.48110 * 23 12 11 25 25 H 0.97007 * 119.99675 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.08425 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.92726 * 180.02562 * 11 10 9 28 28 H 0.97003 * 119.99690 * 0.02562 * 13 12 11 29 29 H 1.08993 * 110.96611 * 24.45801 * 16 14 13 30 30 H 1.08995 * 110.96801 * 148.18195 * 16 14 13 31 31 H 1.09001 * 110.23755 * 93.31344 * 17 16 14 32 32 H 1.09011 * 110.23366 * 215.28308 * 17 16 14 33 33 H 1.08004 * 126.58204 * 0.23131 * 19 18 17 34 34 H 1.07998 * 125.98718 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.92156 * 179.71836 * 23 12 11 36 36 H 1.07998 * 120.08237 * 180.23584 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3464 -0.0006 5 1 1.8843 2.3964 -1.2126 6 1 1.8844 2.3965 1.2124 7 6 2.0083 -1.2112 -0.0005 8 1 3.0488 -1.2343 0.2882 9 6 1.3543 -2.4036 -0.3783 10 6 1.8265 -3.6473 0.0854 11 6 1.1894 -4.7949 -0.2832 12 6 0.0724 -4.7398 -1.1182 13 7 -0.5711 -5.9128 -1.4899 14 6 -1.7434 -5.8590 -2.3666 15 1 -2.3114 -4.9463 -2.1866 16 6 -2.6361 -7.1022 -2.1526 17 6 -2.1136 -8.0582 -3.2464 18 7 -1.5479 -7.1899 -4.2898 19 6 -1.1563 -7.2044 -5.6047 20 6 -0.7061 -5.9690 -5.8909 21 7 -0.8190 -5.2200 -4.7855 22 6 -1.3259 -5.9455 -3.8210 23 6 -0.3977 -3.5117 -1.5857 24 6 0.2259 -2.3555 -1.2205 25 1 -0.4850 0.8401 -0.0004 26 1 2.6905 -3.6915 0.7318 27 1 1.5500 -5.7491 0.0717 28 1 -0.2442 -6.7679 -1.1690 29 1 -2.4841 -7.5252 -1.1596 30 1 -3.6865 -6.8607 -2.3148 31 1 -1.3411 -8.7106 -2.8393 32 1 -2.9335 -8.6511 -3.6520 33 1 -1.2007 -8.0459 -6.2803 34 1 -0.3214 -5.6389 -6.8446 35 1 -1.2599 -3.4768 -2.2352 36 1 -0.1413 -1.4056 -1.5800 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379163758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:05 Heat of formation + Delta-G solvation = 106.803675 kcal Electronic energy + Delta-G solvation = -19636.424393 eV Core-core repulsion = 16700.809166 eV Total energy + Delta-G solvation = -2935.615227 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.26002 -38.07276 -36.58440 -34.31102 -32.77940 -30.74295 -29.39501 -28.50631 -28.42366 -26.32749 -24.10734 -22.25619 -21.31149 -20.64179 -20.29597 -19.35137 -17.16051 -16.80981 -16.56325 -15.61394 -14.89967 -14.67002 -14.38384 -14.11667 -13.77427 -13.70021 -13.02385 -12.69387 -12.66126 -12.42469 -12.06436 -11.81463 -11.65727 -11.21703 -11.14072 -10.98226 -10.76286 -10.44292 -9.64924 -9.60359 -9.43865 -9.27364 -9.18653 -8.61553 -8.21912 -7.39775 -6.60900 -6.39118 -3.98989 2.16756 2.78120 2.95313 3.18756 3.20809 3.25705 3.32797 3.41026 3.92773 4.10661 4.24383 4.49736 4.51979 4.73041 4.85377 4.96991 5.13386 5.44906 5.50734 5.67164 5.72399 5.84276 5.92014 6.31294 6.41372 6.45935 6.92529 7.00974 7.01612 7.18556 7.25905 7.40607 7.57408 7.75753 7.89309 8.22551 8.30111 8.40312 8.50936 8.67151 8.84232 9.12068 9.20797 10.42357 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029960 B = 0.004436 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.354347 B = 6309.916067 C = 6692.019764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.263 1.263 5 H -0.274 1.274 6 H -0.277 1.277 7 C -0.466 4.466 8 H 0.073 0.927 9 C 0.079 3.921 10 C -0.193 4.193 11 C -0.152 4.152 12 C 0.083 3.917 13 N -0.741 5.741 14 C 0.238 3.762 15 H 0.106 0.894 16 C -0.137 4.137 17 C 0.105 3.895 18 N -0.485 5.485 19 C -0.051 4.051 20 C -0.024 4.024 21 N -0.466 5.466 22 C 0.187 3.813 23 C -0.144 4.144 24 C -0.125 4.125 25 H 0.275 0.725 26 H 0.091 0.909 27 H 0.084 0.916 28 H 0.385 0.615 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.091 0.909 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.635 -14.150 -5.704 16.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.140 4.140 3 Si 0.727 3.273 4 H -0.186 1.186 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.497 4.497 8 H 0.091 0.909 9 C 0.076 3.924 10 C -0.213 4.213 11 C -0.174 4.174 12 C -0.013 4.013 13 N -0.376 5.376 14 C 0.127 3.873 15 H 0.124 0.876 16 C -0.176 4.176 17 C -0.017 4.017 18 N -0.170 5.170 19 C -0.183 4.183 20 C -0.173 4.173 21 N -0.184 5.184 22 C -0.079 4.079 23 C -0.166 4.166 24 C -0.145 4.145 25 H 0.086 0.914 26 H 0.109 0.891 27 H 0.102 0.898 28 H 0.218 0.782 29 H 0.125 0.875 30 H 0.115 0.885 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.184 0.816 34 H 0.187 0.813 35 H 0.109 0.891 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -6.769 -13.281 -5.735 15.971 hybrid contribution 0.380 -0.548 -0.253 0.713 sum -6.389 -13.829 -5.988 16.368 Atomic orbital electron populations 1.69868 1.07371 1.28513 1.37546 1.25790 0.94644 1.00873 0.92679 0.86379 0.81017 0.81639 0.78300 1.18643 1.19921 1.20306 1.19411 0.97940 0.91415 1.40938 0.90925 1.17519 0.92276 0.91966 0.90594 1.20498 1.02851 0.92632 1.05356 1.19750 0.97477 0.96965 1.03163 1.17266 0.96233 0.85301 1.02496 1.43748 1.32565 1.06392 1.54871 1.19458 0.87829 0.99150 0.80858 0.87612 1.23021 1.00530 0.94731 0.99302 1.22342 0.98863 0.93377 0.87116 1.46531 1.47705 1.13424 1.09315 1.22268 1.10115 1.01364 0.84528 1.22368 1.06303 0.90297 0.98302 1.69982 1.17279 1.32547 0.98555 1.25428 1.02281 0.82392 0.97789 1.20103 1.01362 0.91719 1.03405 1.20935 0.98140 0.96574 0.98809 0.91377 0.89122 0.89787 0.78235 0.87514 0.88534 0.89636 0.89414 0.81611 0.81265 0.89096 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.79 10.96 55.54 0.61 -21.18 16 2 C 0.08 1.99 5.13 -17.34 -0.09 1.90 16 3 Si 0.90 19.68 29.60 -169.99 -5.03 14.65 16 4 H -0.26 -5.68 7.11 56.52 0.40 -5.28 16 5 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 6 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 7 C -0.47 -12.97 9.03 -37.87 -0.34 -13.32 16 8 H 0.07 1.96 7.91 -52.48 -0.41 1.54 16 9 C 0.08 2.20 5.57 -106.79 -0.60 1.61 16 10 C -0.19 -4.90 9.74 -39.27 -0.38 -5.28 16 11 C -0.15 -3.46 9.82 -39.77 -0.39 -3.85 16 12 C 0.08 1.82 6.67 -83.69 -0.56 1.26 16 13 N -0.74 -12.57 5.25 -51.96 -0.27 -12.84 16 14 C 0.24 3.53 2.96 -67.85 -0.20 3.33 16 15 H 0.11 1.71 6.37 -51.93 -0.33 1.38 16 16 C -0.14 -1.25 6.77 -25.20 -0.17 -1.42 16 17 C 0.10 0.93 7.78 -3.01 -0.02 0.91 16 18 N -0.48 -6.47 3.61 -112.23 -0.41 -6.88 16 19 C -0.05 -0.66 12.04 -16.45 -0.20 -0.86 16 20 C -0.02 -0.37 11.86 -17.90 -0.21 -0.58 16 21 N -0.47 -9.02 11.26 -10.56 -0.12 -9.14 16 22 C 0.19 3.15 8.23 -154.86 -1.27 1.87 16 23 C -0.14 -3.51 9.14 -39.77 -0.36 -3.88 16 24 C -0.12 -3.39 8.64 -39.26 -0.34 -3.73 16 25 H 0.28 6.80 8.30 -40.82 -0.34 6.46 16 26 H 0.09 2.17 8.06 -52.49 -0.42 1.75 16 27 H 0.08 1.67 8.06 -52.49 -0.42 1.25 16 28 H 0.38 5.61 8.63 -40.82 -0.35 5.26 16 29 H 0.11 0.79 8.07 -51.93 -0.42 0.37 16 30 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.17 1.51 8.06 -52.48 -0.42 1.09 16 34 H 0.17 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.09 2.10 6.17 -52.49 -0.32 1.78 16 36 H 0.12 3.35 6.16 -52.49 -0.32 3.03 16 LS Contribution 303.64 15.07 4.58 4.58 Total: -1.00 -32.80 303.64 -10.04 -42.84 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -4.26 Total: 10.00 kcal Atomic # 6 Polarization: -16.89 SS G_CDS: -5.14 Total: -22.03 kcal Atomic # 7 Polarization: -49.86 SS G_CDS: -0.19 Total: -50.04 kcal Atomic # 14 Polarization: 19.68 SS G_CDS: -5.03 Total: 14.65 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -32.80 -10.04 -42.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379163758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.642 kcal (2) G-P(sol) polarization free energy of solvation -32.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.040 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds