Wall clock time and date at job start Mon Mar 30 2020 01:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30905 * 1 3 3 Si 1.86800 * 119.99949 * 2 1 4 4 H 1.48501 * 109.46988 * 180.02562 * 3 2 1 5 5 H 1.48507 * 109.46949 * 299.99725 * 3 2 1 6 6 H 1.48491 * 109.47550 * 60.00038 * 3 2 1 7 7 C 1.39857 * 119.99778 * 180.02562 * 2 1 3 8 8 H 1.08008 * 120.00293 * 197.98094 * 7 2 1 9 9 C 1.41143 * 120.00375 * 17.97606 * 7 2 1 10 10 C 1.40880 * 120.15790 * 204.60679 * 9 7 2 11 11 C 1.36338 * 119.83853 * 179.97438 * 10 9 7 12 12 C 1.39567 * 120.15956 * 0.02783 * 11 10 9 13 13 N 1.38858 * 119.84533 * 179.97438 * 12 11 10 14 14 C 1.46491 * 120.00405 * 180.02562 * 13 12 11 15 15 H 1.08998 * 110.42711 * 327.51785 * 14 13 12 16 16 C 1.54540 * 110.47954 * 205.00421 * 14 13 12 17 17 C 1.54388 * 101.80230 * 266.32100 * 16 14 13 18 18 N 1.47064 * 105.50102 * 334.32283 * 17 16 14 19 19 C 1.37200 * 141.58225 * 196.96234 * 18 17 16 20 20 C 1.34564 * 106.83618 * 180.24490 * 19 18 17 21 21 N 1.34005 * 108.02853 * 359.97057 * 20 19 18 22 22 C 1.30904 * 109.30595 * 359.89874 * 21 20 19 23 23 C 1.39566 * 120.31658 * 0.23047 * 12 11 10 24 24 C 1.36347 * 120.16046 * 359.48110 * 23 12 11 25 25 H 0.97007 * 119.99675 * 0.02562 * 1 2 3 26 26 H 1.08001 * 120.08425 * 0.02562 * 10 9 7 27 27 H 1.07998 * 119.92726 * 180.02562 * 11 10 9 28 28 H 0.97003 * 119.99690 * 0.02562 * 13 12 11 29 29 H 1.08993 * 110.96611 * 24.45801 * 16 14 13 30 30 H 1.08995 * 110.96801 * 148.18195 * 16 14 13 31 31 H 1.09001 * 110.23755 * 93.31344 * 17 16 14 32 32 H 1.09011 * 110.23366 * 215.28308 * 17 16 14 33 33 H 1.08004 * 126.58204 * 0.23131 * 19 18 17 34 34 H 1.07998 * 125.98718 * 179.97438 * 20 19 18 35 35 H 1.08001 * 119.92156 * 179.71836 * 23 12 11 36 36 H 1.07998 * 120.08237 * 180.23584 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3091 0.0000 0.0000 3 14 2.2430 1.6177 0.0000 4 1 3.7030 1.3464 -0.0006 5 1 1.8843 2.3964 -1.2126 6 1 1.8844 2.3965 1.2124 7 6 2.0083 -1.2112 -0.0005 8 1 3.0488 -1.2343 0.2882 9 6 1.3543 -2.4036 -0.3783 10 6 1.8265 -3.6473 0.0854 11 6 1.1894 -4.7949 -0.2832 12 6 0.0724 -4.7398 -1.1182 13 7 -0.5711 -5.9128 -1.4899 14 6 -1.7434 -5.8590 -2.3666 15 1 -2.3114 -4.9463 -2.1866 16 6 -2.6361 -7.1022 -2.1526 17 6 -2.1136 -8.0582 -3.2464 18 7 -1.5479 -7.1899 -4.2898 19 6 -1.1563 -7.2044 -5.6047 20 6 -0.7061 -5.9690 -5.8909 21 7 -0.8190 -5.2200 -4.7855 22 6 -1.3259 -5.9455 -3.8210 23 6 -0.3977 -3.5117 -1.5857 24 6 0.2259 -2.3555 -1.2205 25 1 -0.4850 0.8401 -0.0004 26 1 2.6905 -3.6915 0.7318 27 1 1.5500 -5.7491 0.0717 28 1 -0.2442 -6.7679 -1.1690 29 1 -2.4841 -7.5252 -1.1596 30 1 -3.6865 -6.8607 -2.3148 31 1 -1.3411 -8.7106 -2.8393 32 1 -2.9335 -8.6511 -3.6520 33 1 -1.2007 -8.0459 -6.2803 34 1 -0.3214 -5.6389 -6.8446 35 1 -1.2599 -3.4768 -2.2352 36 1 -0.1413 -1.4056 -1.5800 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379163758.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:05 Heat of formation + Delta-G solvation = 86.464104 kcal Electronic energy + Delta-G solvation = -19637.306383 eV Core-core repulsion = 16700.809166 eV Total energy + Delta-G solvation = -2936.497217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -43.32813 -39.79639 -37.88334 -35.91312 -34.44211 -32.08480 -31.33143 -30.13758 -29.47514 -27.59394 -25.89779 -23.48219 -22.74815 -22.22208 -21.64196 -20.65804 -19.15016 -18.13440 -17.77648 -16.90908 -16.64027 -16.05056 -15.61257 -15.38459 -15.21687 -14.70865 -14.49329 -14.46800 -14.03221 -13.85484 -13.53963 -13.43563 -13.05554 -12.75331 -12.67622 -12.38463 -12.25495 -12.24005 -11.57357 -11.17418 -11.10336 -10.78585 -10.51439 -10.40692 -9.37176 -9.33209 -8.55618 -8.21450 -6.01439 1.06862 1.13603 1.21205 1.39822 1.54486 1.58104 1.90698 2.14859 2.27777 2.84189 2.92957 3.05335 3.52574 3.72094 3.89683 4.00554 4.19946 4.38102 4.43385 4.51121 4.59143 4.63274 4.74389 4.88520 4.92760 5.05518 5.16046 5.28696 5.39044 5.46218 5.66869 5.81739 5.93593 5.97369 6.19087 6.20727 6.37740 6.62991 6.84962 7.08890 7.12762 7.26891 7.31010 8.48923 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029960 B = 0.004436 C = 0.004183 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 934.354347 B = 6309.916067 C = 6692.019764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.840 5.840 2 C 0.032 3.968 3 Si 0.976 3.024 4 H -0.260 1.260 5 H -0.269 1.269 6 H -0.265 1.265 7 C -0.506 4.506 8 H 0.068 0.932 9 C 0.039 3.961 10 C -0.201 4.201 11 C -0.158 4.158 12 C 0.108 3.892 13 N -0.728 5.728 14 C 0.227 3.773 15 H 0.082 0.918 16 C -0.120 4.120 17 C 0.100 3.900 18 N -0.477 5.477 19 C -0.027 4.027 20 C -0.062 4.062 21 N -0.529 5.529 22 C 0.153 3.847 23 C -0.156 4.156 24 C -0.148 4.148 25 H 0.282 0.718 26 H 0.098 0.902 27 H 0.122 0.878 28 H 0.401 0.599 29 H 0.132 0.868 30 H 0.116 0.884 31 H 0.104 0.896 32 H 0.124 0.876 33 H 0.211 0.789 34 H 0.182 0.818 35 H 0.094 0.906 36 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.371 -17.317 -5.874 19.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.468 5.468 2 C -0.180 4.180 3 Si 0.798 3.202 4 H -0.184 1.184 5 H -0.194 1.194 6 H -0.190 1.190 7 C -0.537 4.537 8 H 0.086 0.914 9 C 0.037 3.963 10 C -0.221 4.221 11 C -0.180 4.180 12 C 0.010 3.990 13 N -0.363 5.363 14 C 0.118 3.882 15 H 0.100 0.900 16 C -0.158 4.158 17 C -0.020 4.020 18 N -0.161 5.161 19 C -0.160 4.160 20 C -0.209 4.209 21 N -0.248 5.248 22 C -0.113 4.113 23 C -0.178 4.178 24 C -0.168 4.168 25 H 0.092 0.908 26 H 0.116 0.884 27 H 0.140 0.860 28 H 0.237 0.763 29 H 0.150 0.850 30 H 0.134 0.866 31 H 0.122 0.878 32 H 0.142 0.858 33 H 0.227 0.773 34 H 0.199 0.801 35 H 0.112 0.888 36 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.538 -16.522 -5.897 19.093 hybrid contribution 0.518 0.215 -0.300 0.636 sum -7.020 -16.307 -6.197 18.804 Atomic orbital electron populations 1.69935 1.08812 1.29719 1.38382 1.26625 0.95451 1.04146 0.91801 0.85259 0.79420 0.76856 0.78712 1.18385 1.19373 1.18986 1.19632 0.98030 0.92839 1.43236 0.91364 1.17827 0.93303 0.93229 0.91969 1.20741 1.03230 0.92843 1.05298 1.20083 0.97255 0.97735 1.02886 1.17342 0.95245 0.86348 1.00089 1.43710 1.32720 1.05300 1.54603 1.19743 0.87332 1.01352 0.79807 0.89981 1.23067 1.00178 0.91634 1.00934 1.22745 1.00492 0.92894 0.85855 1.46825 1.46494 1.12954 1.09800 1.22865 1.07005 1.01402 0.84708 1.22785 1.08262 0.91574 0.98321 1.69845 1.19131 1.35280 1.00583 1.25469 1.03647 0.83923 0.98225 1.20161 1.01630 0.92127 1.03878 1.20827 0.99200 0.96631 1.00114 0.90778 0.88358 0.86023 0.76279 0.85028 0.86575 0.87772 0.85834 0.77278 0.80072 0.88773 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -47.65 10.96 21.81 0.24 -47.41 16 2 C 0.03 1.74 5.13 85.22 0.44 2.18 16 3 Si 0.98 41.73 29.60 68.60 2.03 43.76 16 4 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 5 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 6 H -0.27 -10.70 7.11 99.48 0.71 -10.00 16 7 C -0.51 -29.59 9.03 23.38 0.21 -29.38 16 8 H 0.07 3.87 7.91 -2.91 -0.02 3.84 16 9 C 0.04 2.30 5.57 -21.27 -0.12 2.18 16 10 C -0.20 -10.37 9.74 22.47 0.22 -10.15 16 11 C -0.16 -7.03 9.82 22.15 0.22 -6.81 16 12 C 0.11 4.72 6.67 38.67 0.26 4.98 16 13 N -0.73 -23.19 5.25 -318.30 -1.67 -24.86 16 14 C 0.23 6.38 2.96 45.05 0.13 6.51 16 15 H 0.08 2.67 6.37 -2.39 -0.02 2.66 16 16 C -0.12 -1.68 6.77 31.59 0.21 -1.47 16 17 C 0.10 1.26 7.78 86.74 0.68 1.93 16 18 N -0.48 -11.15 3.61 -508.98 -1.84 -12.99 16 19 C -0.03 -0.61 12.04 83.01 1.00 0.39 16 20 C -0.06 -1.87 11.86 83.52 0.99 -0.88 16 21 N -0.53 -20.79 11.26 -187.33 -2.11 -22.90 16 22 C 0.15 4.99 8.23 138.36 1.14 6.13 16 23 C -0.16 -7.88 9.14 22.15 0.20 -7.68 16 24 C -0.15 -8.50 8.64 22.48 0.19 -8.30 16 25 H 0.28 14.50 8.30 -92.70 -0.77 13.74 16 26 H 0.10 4.78 8.06 -2.91 -0.02 4.75 16 27 H 0.12 4.46 8.06 -2.91 -0.02 4.43 16 28 H 0.40 10.23 8.63 -92.71 -0.80 9.43 16 29 H 0.13 1.24 8.07 -2.39 -0.02 1.23 16 30 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.12 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.21 2.78 8.06 -2.91 -0.02 2.75 16 34 H 0.18 4.59 8.06 -2.91 -0.02 4.56 16 35 H 0.09 4.59 6.17 -2.91 -0.02 4.57 16 36 H 0.09 5.73 6.16 -2.91 -0.02 5.71 16 Total: -1.00 -77.46 303.64 2.73 -74.73 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: 0.31 Total: 30.05 kcal Atomic # 6 Polarization: -46.15 SS G_CDS: 5.77 Total: -40.38 kcal Atomic # 7 Polarization: -102.78 SS G_CDS: -5.38 Total: -108.15 kcal Atomic # 14 Polarization: 41.73 SS G_CDS: 2.03 Total: 43.76 kcal Total: -77.46 2.73 -74.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379163758.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.190 kcal (2) G-P(sol) polarization free energy of solvation -77.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.726 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds