Wall clock time and date at job start Mon Mar 30 2020 01:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86803 * 120.00261 * 2 1 4 4 H 1.48490 * 109.47005 * 270.00198 * 3 2 1 5 5 H 1.48502 * 109.46614 * 30.00166 * 3 2 1 6 6 H 1.48496 * 109.47261 * 150.00213 * 3 2 1 7 7 C 1.39869 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00367 * 197.96049 * 7 2 1 9 9 C 1.41144 * 119.99883 * 17.96890 * 7 2 1 10 10 C 1.40880 * 120.15634 * 24.60436 * 9 7 2 11 11 C 1.36343 * 119.83734 * 179.97438 * 10 9 7 12 12 C 1.39562 * 120.15763 * 359.97438 * 11 10 9 13 13 N 1.38860 * 119.84002 * 180.02562 * 12 11 10 14 14 C 1.46504 * 120.00165 * 180.02562 * 13 12 11 15 15 H 1.09004 * 110.42321 * 34.29841 * 14 13 12 16 16 C 1.54537 * 110.58924 * 156.88894 * 14 13 12 17 17 C 1.54394 * 101.76556 * 143.91447 * 16 14 13 18 18 N 1.47002 * 105.52451 * 334.26322 * 17 16 14 19 19 C 1.37205 * 141.59292 * 197.00835 * 18 17 16 20 20 C 1.34566 * 106.83253 * 180.28598 * 19 18 17 21 21 N 1.34008 * 108.02868 * 359.96860 * 20 19 18 22 22 C 1.30906 * 109.30828 * 359.89266 * 21 20 19 23 23 C 1.39565 * 120.31786 * 0.27893 * 12 11 10 24 24 C 1.36335 * 120.16112 * 359.48165 * 23 12 11 25 25 H 0.97000 * 119.99845 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.08362 * 0.02562 * 10 9 7 27 27 H 1.07995 * 119.91814 * 180.02562 * 11 10 9 28 28 H 0.97003 * 120.00045 * 359.97438 * 13 12 11 29 29 H 1.09000 * 110.96848 * 262.02522 * 16 14 13 30 30 H 1.08999 * 110.96767 * 25.78458 * 16 14 13 31 31 H 1.09001 * 110.22036 * 215.25713 * 17 16 14 32 32 H 1.09000 * 110.31906 * 93.32558 * 17 16 14 33 33 H 1.07995 * 126.58324 * 0.32465 * 19 18 17 34 34 H 1.07994 * 125.98364 * 179.97438 * 20 19 18 35 35 H 1.08005 * 119.91904 * 179.72140 * 23 12 11 36 36 H 1.08002 * 120.08734 * 180.27268 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0464 -1.4000 5 1 1.4405 2.6526 0.7001 6 1 3.5407 1.4401 0.7000 7 6 2.0084 -1.2113 0.0005 8 1 3.0489 -1.2340 0.2889 9 6 1.3543 -2.4040 -0.3760 10 6 0.2260 -2.3568 -1.2184 11 6 -0.4005 -3.5130 -1.5785 12 6 0.0736 -4.7411 -1.1151 13 7 -0.5693 -5.9145 -1.4864 14 6 -0.0749 -7.2056 -1.0016 15 1 0.3265 -7.1049 0.0068 16 6 -1.1999 -8.2646 -1.0323 17 6 -0.4224 -9.5386 -1.4277 18 7 0.7584 -9.0660 -2.1648 19 6 1.7378 -9.5032 -3.0204 20 6 2.5253 -8.4446 -3.2848 21 7 2.0429 -7.3906 -2.6124 22 6 0.9807 -7.7554 -1.9399 23 6 1.1876 -4.7950 -0.2761 24 6 1.8270 -3.6473 0.0882 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1412 -1.4072 -1.5787 27 1 -1.2652 -3.4783 -2.2245 28 1 -1.3461 -5.8794 -2.0662 29 1 -1.6574 -8.3763 -0.0493 30 1 -1.9494 -8.0159 -1.7837 31 1 -1.0373 -10.1720 -2.0670 32 1 -0.1163 -10.0869 -0.5368 33 1 1.8540 -10.5046 -3.4078 34 1 3.3939 -8.4445 -3.9265 35 1 1.5463 -5.7486 0.0824 36 1 2.6916 -3.6908 0.7340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379163759.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:07 Heat of formation + Delta-G solvation = 107.246593 kcal Electronic energy + Delta-G solvation = -19537.916551 eV Core-core repulsion = 16602.320530 eV Total energy + Delta-G solvation = -2935.596021 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.27285 -38.02802 -36.55336 -34.42750 -32.79960 -30.74403 -29.37138 -28.54089 -28.38013 -26.25996 -24.02365 -22.39070 -21.28090 -20.47435 -20.39307 -19.33172 -17.20124 -16.97539 -16.25953 -15.81428 -15.10438 -14.60209 -14.22734 -14.01932 -13.79730 -13.55690 -13.17928 -12.81203 -12.56270 -12.38320 -12.10155 -11.90485 -11.67455 -11.23739 -11.18367 -10.92174 -10.76793 -10.41609 -9.61238 -9.57680 -9.45133 -9.25796 -9.19120 -8.56517 -8.22675 -7.37490 -6.58476 -6.36392 -3.96653 2.15243 2.74204 2.97698 3.19416 3.22862 3.24159 3.36554 3.43213 3.87021 4.11657 4.21277 4.47185 4.57591 4.70987 4.86741 4.97374 5.09906 5.27042 5.48101 5.65818 5.75343 5.78825 5.93866 6.36600 6.39239 6.42777 6.90538 6.99615 7.11390 7.18105 7.28551 7.37449 7.64086 7.75076 7.87554 8.23699 8.40156 8.41719 8.51705 8.68569 8.86242 9.14087 9.23126 10.44010 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037747 B = 0.004109 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.597045 B = 6812.106275 C = 7225.527178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.075 3.925 3 Si 0.902 3.098 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.265 1.265 7 C -0.466 4.466 8 H 0.072 0.928 9 C 0.079 3.921 10 C -0.126 4.126 11 C -0.157 4.157 12 C 0.090 3.910 13 N -0.739 5.739 14 C 0.241 3.759 15 H 0.104 0.896 16 C -0.136 4.136 17 C 0.107 3.893 18 N -0.489 5.489 19 C -0.052 4.052 20 C -0.025 4.025 21 N -0.460 5.460 22 C 0.184 3.816 23 C -0.140 4.140 24 C -0.188 4.188 25 H 0.275 0.725 26 H 0.118 0.882 27 H 0.085 0.915 28 H 0.387 0.613 29 H 0.106 0.894 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.167 0.833 34 H 0.170 0.830 35 H 0.085 0.915 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.742 -16.839 -2.615 17.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.498 4.498 8 H 0.091 0.909 9 C 0.076 3.924 10 C -0.146 4.146 11 C -0.178 4.178 12 C -0.006 4.006 13 N -0.374 5.374 14 C 0.130 3.870 15 H 0.121 0.879 16 C -0.175 4.175 17 C -0.015 4.015 18 N -0.174 5.174 19 C -0.183 4.183 20 C -0.174 4.174 21 N -0.177 5.177 22 C -0.081 4.081 23 C -0.162 4.162 24 C -0.208 4.208 25 H 0.086 0.914 26 H 0.136 0.864 27 H 0.103 0.897 28 H 0.221 0.779 29 H 0.124 0.876 30 H 0.109 0.891 31 H 0.106 0.894 32 H 0.107 0.893 33 H 0.184 0.816 34 H 0.187 0.813 35 H 0.103 0.897 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.564 -16.177 -2.505 16.753 hybrid contribution -0.095 -0.255 -0.410 0.492 sum -3.659 -16.432 -2.915 17.085 Atomic orbital electron populations 1.69861 1.07336 1.28497 1.37914 1.25784 0.94641 1.00815 0.92726 0.86417 0.80496 0.81259 0.79071 1.19565 1.20647 1.18871 1.19394 0.97952 0.91386 1.41025 0.90939 1.17493 0.92281 0.91964 0.90692 1.20879 0.98271 0.96307 0.99173 1.19986 1.01455 0.91830 1.04573 1.17234 0.96462 0.84656 1.02247 1.43702 1.34392 1.01383 1.57904 1.19599 0.88072 0.84408 0.94934 0.87887 1.23026 0.97687 0.92393 1.04359 1.22314 0.84867 0.97972 0.96372 1.46520 1.22874 1.12513 1.35532 1.22271 0.93649 1.01254 1.01157 1.22411 1.02152 0.88573 1.04250 1.70025 1.08527 1.29360 1.09832 1.25520 0.97566 0.82875 1.02166 1.19793 0.97205 0.96872 1.02335 1.20545 1.02509 0.92688 1.05096 0.91416 0.86398 0.89650 0.77918 0.87587 0.89131 0.89447 0.89285 0.81585 0.81277 0.89679 0.89190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -21.81 10.96 55.54 0.61 -21.20 16 2 C 0.08 1.98 5.13 -17.34 -0.09 1.90 16 3 Si 0.90 19.71 29.60 -169.99 -5.03 14.68 16 4 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 5 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 6 H -0.26 -5.72 7.11 56.52 0.40 -5.32 16 7 C -0.47 -13.04 9.03 -37.87 -0.34 -13.38 16 8 H 0.07 1.97 7.91 -52.49 -0.41 1.56 16 9 C 0.08 2.19 5.57 -106.79 -0.60 1.59 16 10 C -0.13 -3.40 8.64 -39.27 -0.34 -3.74 16 11 C -0.16 -3.75 9.82 -39.77 -0.39 -4.14 16 12 C 0.09 2.00 6.67 -83.69 -0.56 1.44 16 13 N -0.74 -12.82 5.29 -51.95 -0.27 -13.10 16 14 C 0.24 3.49 2.91 -67.85 -0.20 3.29 16 15 H 0.10 1.56 6.46 -51.93 -0.34 1.22 16 16 C -0.14 -1.21 6.86 -25.19 -0.17 -1.38 16 17 C 0.11 0.89 7.78 -3.04 -0.02 0.87 16 18 N -0.49 -6.32 3.61 -112.28 -0.41 -6.73 16 19 C -0.05 -0.65 12.04 -16.45 -0.20 -0.85 16 20 C -0.02 -0.38 11.86 -17.90 -0.21 -0.59 16 21 N -0.46 -8.86 11.26 -10.56 -0.12 -8.98 16 22 C 0.18 3.05 8.22 -154.86 -1.27 1.78 16 23 C -0.14 -3.30 9.14 -39.77 -0.36 -3.66 16 24 C -0.19 -4.87 9.74 -39.26 -0.38 -5.25 16 25 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 26 H 0.12 3.28 6.16 -52.48 -0.32 2.96 16 27 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 28 H 0.39 5.97 8.41 -40.82 -0.34 5.63 16 29 H 0.11 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.75 7.82 -51.93 -0.41 0.34 16 31 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.09 0.59 8.14 -51.93 -0.42 0.16 16 33 H 0.17 1.45 8.06 -52.49 -0.42 1.03 16 34 H 0.17 2.11 8.06 -52.49 -0.42 1.68 16 35 H 0.09 1.85 6.20 -52.48 -0.33 1.52 16 36 H 0.09 2.22 8.06 -52.49 -0.42 1.80 16 LS Contribution 303.36 15.07 4.57 4.57 Total: -1.00 -33.06 303.36 -10.03 -43.09 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -4.24 Total: 9.80 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -5.14 Total: -22.14 kcal Atomic # 7 Polarization: -49.81 SS G_CDS: -0.19 Total: -50.00 kcal Atomic # 14 Polarization: 19.71 SS G_CDS: -5.03 Total: 14.68 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -33.06 -10.03 -43.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379163759.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.334 kcal (2) G-P(sol) polarization free energy of solvation -33.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds