Wall clock time and date at job start Mon Mar 30 2020 01:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30903 * 1 3 3 Si 1.86803 * 120.00261 * 2 1 4 4 H 1.48490 * 109.47005 * 270.00198 * 3 2 1 5 5 H 1.48502 * 109.46614 * 30.00166 * 3 2 1 6 6 H 1.48496 * 109.47261 * 150.00213 * 3 2 1 7 7 C 1.39869 * 119.99985 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00367 * 197.96049 * 7 2 1 9 9 C 1.41144 * 119.99883 * 17.96890 * 7 2 1 10 10 C 1.40880 * 120.15634 * 24.60436 * 9 7 2 11 11 C 1.36343 * 119.83734 * 179.97438 * 10 9 7 12 12 C 1.39562 * 120.15763 * 359.97438 * 11 10 9 13 13 N 1.38860 * 119.84002 * 180.02562 * 12 11 10 14 14 C 1.46504 * 120.00165 * 180.02562 * 13 12 11 15 15 H 1.09004 * 110.42321 * 34.29841 * 14 13 12 16 16 C 1.54537 * 110.58924 * 156.88894 * 14 13 12 17 17 C 1.54394 * 101.76556 * 143.91447 * 16 14 13 18 18 N 1.47002 * 105.52451 * 334.26322 * 17 16 14 19 19 C 1.37205 * 141.59292 * 197.00835 * 18 17 16 20 20 C 1.34566 * 106.83253 * 180.28598 * 19 18 17 21 21 N 1.34008 * 108.02868 * 359.96860 * 20 19 18 22 22 C 1.30906 * 109.30828 * 359.89266 * 21 20 19 23 23 C 1.39565 * 120.31786 * 0.27893 * 12 11 10 24 24 C 1.36335 * 120.16112 * 359.48165 * 23 12 11 25 25 H 0.97000 * 119.99845 * 0.02562 * 1 2 3 26 26 H 1.08005 * 120.08362 * 0.02562 * 10 9 7 27 27 H 1.07995 * 119.91814 * 180.02562 * 11 10 9 28 28 H 0.97003 * 120.00045 * 359.97438 * 13 12 11 29 29 H 1.09000 * 110.96848 * 262.02522 * 16 14 13 30 30 H 1.08999 * 110.96767 * 25.78458 * 16 14 13 31 31 H 1.09001 * 110.22036 * 215.25713 * 17 16 14 32 32 H 1.09000 * 110.31906 * 93.32558 * 17 16 14 33 33 H 1.07995 * 126.58324 * 0.32465 * 19 18 17 34 34 H 1.07994 * 125.98364 * 179.97438 * 20 19 18 35 35 H 1.08005 * 119.91904 * 179.72140 * 23 12 11 36 36 H 1.08002 * 120.08734 * 180.27268 * 24 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2431 1.6177 0.0000 4 1 2.4906 2.0464 -1.4000 5 1 1.4405 2.6526 0.7001 6 1 3.5407 1.4401 0.7000 7 6 2.0084 -1.2113 0.0005 8 1 3.0489 -1.2340 0.2889 9 6 1.3543 -2.4040 -0.3760 10 6 0.2260 -2.3568 -1.2184 11 6 -0.4005 -3.5130 -1.5785 12 6 0.0736 -4.7411 -1.1151 13 7 -0.5693 -5.9145 -1.4864 14 6 -0.0749 -7.2056 -1.0016 15 1 0.3265 -7.1049 0.0068 16 6 -1.1999 -8.2646 -1.0323 17 6 -0.4224 -9.5386 -1.4277 18 7 0.7584 -9.0660 -2.1648 19 6 1.7378 -9.5032 -3.0204 20 6 2.5253 -8.4446 -3.2848 21 7 2.0429 -7.3906 -2.6124 22 6 0.9807 -7.7554 -1.9399 23 6 1.1876 -4.7950 -0.2761 24 6 1.8270 -3.6473 0.0882 25 1 -0.4850 0.8401 -0.0004 26 1 -0.1412 -1.4072 -1.5787 27 1 -1.2652 -3.4783 -2.2245 28 1 -1.3461 -5.8794 -2.0662 29 1 -1.6574 -8.3763 -0.0493 30 1 -1.9494 -8.0159 -1.7837 31 1 -1.0373 -10.1720 -2.0670 32 1 -0.1163 -10.0869 -0.5368 33 1 1.8540 -10.5046 -3.4078 34 1 3.3939 -8.4445 -3.9265 35 1 1.5463 -5.7486 0.0824 36 1 2.6916 -3.6908 0.7340 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000379163759.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:07 Heat of formation + Delta-G solvation = 86.760569 kcal Electronic energy + Delta-G solvation = -19538.804892 eV Core-core repulsion = 16602.320530 eV Total energy + Delta-G solvation = -2936.484361 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -43.30855 -39.77359 -37.80943 -35.99080 -34.50311 -32.14150 -31.21935 -30.14929 -29.46193 -27.54496 -25.80776 -23.53129 -22.64666 -22.23274 -21.68754 -20.61274 -19.09761 -18.19806 -17.46246 -17.20921 -16.86352 -15.88506 -15.67006 -15.23974 -15.07635 -14.68365 -14.58747 -14.30686 -14.07368 -13.81049 -13.58495 -13.37953 -13.16281 -12.83462 -12.63054 -12.62983 -12.22646 -12.06850 -11.54205 -11.20318 -11.09715 -10.74061 -10.48157 -10.37949 -9.36525 -9.29228 -8.54167 -8.19793 -6.00020 1.08920 1.15276 1.22895 1.40618 1.53305 1.60349 1.89692 2.21255 2.28874 2.79921 2.86094 3.15618 3.53044 3.80025 3.91074 3.96364 4.18427 4.36251 4.43666 4.47649 4.56092 4.62769 4.74467 4.90779 4.93807 5.04303 5.19597 5.32596 5.39568 5.43608 5.73422 5.78141 5.94372 5.95251 6.19898 6.20397 6.42542 6.66319 6.86099 7.10154 7.11331 7.28552 7.33146 8.49819 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037747 B = 0.004109 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.597045 B = 6812.106275 C = 7225.527178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.839 5.839 2 C 0.034 3.966 3 Si 0.976 3.024 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.263 1.263 7 C -0.508 4.508 8 H 0.064 0.936 9 C 0.040 3.960 10 C -0.144 4.144 11 C -0.169 4.169 12 C 0.116 3.884 13 N -0.731 5.731 14 C 0.230 3.770 15 H 0.093 0.907 16 C -0.121 4.121 17 C 0.103 3.897 18 N -0.482 5.482 19 C -0.027 4.027 20 C -0.063 4.063 21 N -0.525 5.525 22 C 0.152 3.848 23 C -0.148 4.148 24 C -0.202 4.202 25 H 0.283 0.717 26 H 0.101 0.899 27 H 0.110 0.890 28 H 0.399 0.601 29 H 0.136 0.864 30 H 0.102 0.898 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.210 0.790 34 H 0.181 0.819 35 H 0.102 0.898 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.153 -19.493 -2.908 20.372 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.467 5.467 2 C -0.178 4.178 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.192 1.192 6 H -0.187 1.187 7 C -0.539 4.539 8 H 0.082 0.918 9 C 0.037 3.963 10 C -0.164 4.164 11 C -0.191 4.191 12 C 0.018 3.982 13 N -0.365 5.365 14 C 0.120 3.880 15 H 0.111 0.889 16 C -0.159 4.159 17 C -0.017 4.017 18 N -0.166 5.166 19 C -0.160 4.160 20 C -0.211 4.211 21 N -0.244 5.244 22 C -0.114 4.114 23 C -0.170 4.170 24 C -0.222 4.222 25 H 0.093 0.907 26 H 0.119 0.881 27 H 0.128 0.872 28 H 0.234 0.766 29 H 0.154 0.846 30 H 0.120 0.880 31 H 0.138 0.862 32 H 0.131 0.869 33 H 0.227 0.773 34 H 0.198 0.802 35 H 0.120 0.880 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.019 -18.901 -2.797 19.755 hybrid contribution 0.307 0.307 -0.370 0.570 sum -4.712 -18.594 -3.166 19.441 Atomic orbital electron populations 1.69911 1.08644 1.29793 1.38376 1.26582 0.95487 1.03936 0.91769 0.85300 0.79043 0.76615 0.79245 1.19034 1.19184 1.18660 1.19588 0.97930 0.92903 1.43525 0.91774 1.17793 0.93540 0.92801 0.92153 1.20831 0.98852 0.96764 0.99977 1.20215 1.02169 0.91663 1.05048 1.17296 0.95173 0.86086 0.99674 1.43730 1.34080 1.01164 1.57505 1.19970 0.89941 0.84241 0.93803 0.88939 1.23084 0.95963 0.90210 1.06619 1.22722 0.83480 0.97983 0.97538 1.46808 1.23562 1.11387 1.34812 1.22853 0.91951 1.02077 0.99084 1.22800 1.03806 0.88953 1.05538 1.69876 1.10493 1.32170 1.11837 1.25565 0.97826 0.84884 1.03118 1.19946 0.97567 0.96746 1.02708 1.20716 1.02901 0.93193 1.05433 0.90688 0.88103 0.87234 0.76559 0.84597 0.87994 0.86209 0.86879 0.77300 0.80209 0.88027 0.89279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -46.74 10.96 21.82 0.24 -46.50 16 2 C 0.03 1.87 5.13 85.23 0.44 2.30 16 3 Si 0.98 41.49 29.60 68.60 2.03 43.52 16 4 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 5 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 6 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 7 C -0.51 -29.92 9.03 23.38 0.21 -29.71 16 8 H 0.06 3.70 7.91 -2.91 -0.02 3.68 16 9 C 0.04 2.34 5.57 -21.27 -0.12 2.22 16 10 C -0.14 -8.08 8.64 22.47 0.19 -7.89 16 11 C -0.17 -8.19 9.82 22.15 0.22 -7.97 16 12 C 0.12 5.16 6.67 38.67 0.26 5.42 16 13 N -0.73 -24.16 5.29 -318.29 -1.68 -25.85 16 14 C 0.23 6.17 2.91 45.04 0.13 6.30 16 15 H 0.09 2.65 6.46 -2.38 -0.02 2.63 16 16 C -0.12 -1.61 6.86 31.59 0.22 -1.39 16 17 C 0.10 1.18 7.78 86.76 0.67 1.86 16 18 N -0.48 -10.79 3.61 -509.14 -1.84 -12.63 16 19 C -0.03 -0.59 12.04 83.01 1.00 0.41 16 20 C -0.06 -1.88 11.86 83.52 0.99 -0.89 16 21 N -0.52 -20.22 11.26 -187.34 -2.11 -22.33 16 22 C 0.15 4.79 8.22 138.36 1.14 5.93 16 23 C -0.15 -7.07 9.14 22.15 0.20 -6.86 16 24 C -0.20 -10.95 9.74 22.47 0.22 -10.73 16 25 H 0.28 14.26 8.30 -92.71 -0.77 13.49 16 26 H 0.10 5.90 6.16 -2.91 -0.02 5.88 16 27 H 0.11 4.65 8.06 -2.91 -0.02 4.63 16 28 H 0.40 11.36 8.41 -92.71 -0.78 10.58 16 29 H 0.14 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.10 1.18 7.82 -2.39 -0.02 1.17 16 31 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.21 2.62 8.06 -2.91 -0.02 2.59 16 34 H 0.18 4.48 8.06 -2.91 -0.02 4.46 16 35 H 0.10 4.46 6.20 -2.91 -0.02 4.44 16 36 H 0.09 4.66 8.06 -2.91 -0.02 4.64 16 Total: -1.00 -77.23 303.36 2.74 -74.49 By element: Atomic # 1 Polarization: 29.97 SS G_CDS: 0.33 Total: 30.29 kcal Atomic # 6 Polarization: -46.78 SS G_CDS: 5.77 Total: -41.01 kcal Atomic # 7 Polarization: -101.91 SS G_CDS: -5.39 Total: -107.30 kcal Atomic # 14 Polarization: 41.49 SS G_CDS: 2.03 Total: 43.52 kcal Total: -77.23 2.74 -74.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379163759.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.253 kcal (2) G-P(sol) polarization free energy of solvation -77.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds