Wall clock time and date at job start Mon Mar 30 2020 01:09:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00065 * 2 1 4 4 H 1.48496 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47179 * 299.99787 * 3 2 1 6 6 H 1.48503 * 109.47456 * 59.99361 * 3 2 1 7 7 C 1.39947 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00688 * 197.74141 * 7 2 1 9 9 C 1.41397 * 119.99746 * 17.73983 * 7 2 1 10 10 C 1.40717 * 120.24553 * 204.28899 * 9 7 2 11 11 C 1.37620 * 119.74444 * 179.70220 * 10 9 7 12 12 C 1.38636 * 120.25102 * 0.27063 * 11 10 9 13 13 C 1.50692 * 119.74883 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.47212 * 90.00023 * 13 12 11 15 15 C 1.34433 * 126.81785 * 84.68322 * 14 13 12 16 16 N 1.30833 * 108.07159 * 179.89329 * 15 14 13 17 17 C 1.33245 * 109.83225 * 0.38300 * 16 15 14 18 18 C 1.50697 * 125.52528 * 179.72835 * 17 16 15 19 19 C 1.52990 * 117.50416 * 8.78761 * 18 17 16 20 20 C 1.53000 * 117.49887 * 300.12251 * 18 17 16 21 21 N 1.30715 * 108.94366 * 359.76062 * 17 16 15 22 22 C 1.38638 * 120.49555 * 0.02562 * 12 11 10 23 23 C 1.37612 * 120.25475 * 359.97438 * 22 12 11 24 24 H 0.96999 * 120.00115 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.12690 * 359.97139 * 10 9 7 26 26 H 1.08001 * 119.87007 * 180.29792 * 11 10 9 27 27 H 1.09005 * 109.47111 * 209.99845 * 13 12 11 28 28 H 1.08998 * 109.47398 * 329.99950 * 13 12 11 29 29 H 1.07998 * 125.96529 * 0.03784 * 15 14 13 30 30 H 1.09009 * 115.54316 * 154.46051 * 18 17 16 31 31 H 1.09005 * 117.49741 * 0.02562 * 19 18 17 32 32 H 1.08996 * 117.50368 * 145.01921 * 19 18 17 33 33 H 1.08999 * 117.50005 * 214.98302 * 20 18 17 34 34 H 1.08993 * 117.49780 * 359.97438 * 20 18 17 35 35 H 1.08003 * 119.86924 * 179.97438 * 22 12 11 36 36 H 1.07995 * 120.13061 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0495 -1.2341 0.2855 9 6 1.3514 -2.4075 -0.3720 10 6 1.8271 -3.6499 0.0865 11 6 1.1765 -4.8067 -0.2775 12 6 0.0599 -4.7516 -1.0973 13 6 -0.6435 -6.0254 -1.4893 14 7 -1.6830 -6.3324 -0.5037 15 6 -2.9386 -5.8526 -0.4810 16 7 -3.5512 -6.3675 0.5540 17 6 -2.7204 -7.1705 1.2177 18 6 -3.0590 -7.9403 2.4682 19 6 -4.5228 -7.9575 2.9127 20 6 -3.4943 -7.1376 3.6958 21 7 -1.5640 -7.1817 0.6084 22 6 -0.4139 -3.5336 -1.5599 23 6 0.2208 -2.3642 -1.2087 24 1 -0.4850 0.8400 -0.0004 25 1 2.6969 -3.6951 0.7252 26 1 1.5370 -5.7610 0.0772 27 1 -1.0994 -5.9011 -2.4716 28 1 0.0771 -6.8425 -1.5239 29 1 -3.3675 -5.1642 -1.1941 30 1 -2.4704 -8.8418 2.6390 31 1 -5.2412 -7.4123 2.3004 32 1 -4.8973 -8.8701 3.3764 33 1 -3.1927 -7.5111 4.6743 34 1 -3.5354 -6.0527 3.5990 35 1 -1.2844 -3.5025 -2.1984 36 1 -0.1502 -1.4164 -1.5699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000398971634.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:32 Heat of formation + Delta-G solvation = 124.778359 kcal Electronic energy + Delta-G solvation = -19151.706166 eV Core-core repulsion = 16216.870380 eV Total energy + Delta-G solvation = -2934.835786 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.65328 -37.85387 -36.96410 -34.47341 -33.00359 -30.88219 -30.07312 -29.43058 -27.13889 -24.44298 -23.36887 -22.32838 -21.69015 -21.11204 -20.08990 -19.51520 -17.45918 -16.69615 -15.76036 -15.55561 -15.31808 -14.42254 -14.30830 -14.03013 -13.85186 -13.76043 -12.70801 -12.34093 -12.13276 -12.00570 -11.79461 -11.46998 -11.33987 -11.22306 -11.18021 -11.00038 -10.64764 -10.54173 -10.46251 -9.90875 -9.60688 -9.55881 -9.31297 -9.27801 -8.81955 -7.64945 -7.52146 -6.93233 -4.53014 2.03304 2.37946 2.85720 2.93501 2.99105 3.04356 3.13188 3.23741 3.81174 4.08120 4.32834 4.46736 4.74744 4.95617 5.09723 5.13494 5.30287 5.50902 5.69052 5.69965 5.78077 5.83562 5.88600 6.14722 6.19720 6.24135 6.26844 6.68091 6.79284 6.82508 6.91516 7.09234 7.18975 7.28597 7.44228 7.66542 7.88640 7.90562 8.12796 8.46779 8.52696 8.72198 8.79515 10.00659 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.004153 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.419765 B = 6740.377188 C = 7152.198175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.784 5.784 2 C 0.075 3.925 3 Si 0.910 3.090 4 H -0.259 1.259 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.455 4.455 8 H 0.081 0.919 9 C 0.119 3.881 10 C -0.230 4.230 11 C -0.058 4.058 12 C -0.258 4.258 13 C 0.188 3.812 14 N -0.356 5.356 15 C 0.254 3.746 16 N -0.553 5.553 17 C 0.236 3.764 18 C -0.069 4.069 19 C -0.157 4.157 20 C -0.160 4.160 21 N -0.315 5.315 22 C -0.081 4.081 23 C -0.169 4.169 24 H 0.283 0.717 25 H 0.094 0.906 26 H 0.089 0.911 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.211 0.789 30 H 0.122 0.878 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.099 0.901 34 H 0.098 0.902 35 H 0.088 0.912 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.308 -8.158 -0.165 9.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.144 4.144 3 Si 0.734 3.266 4 H -0.182 1.182 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.484 4.484 8 H 0.099 0.901 9 C 0.116 3.884 10 C -0.250 4.250 11 C -0.077 4.077 12 C -0.261 4.261 13 C 0.069 3.931 14 N -0.145 5.145 15 C -0.043 4.043 16 N -0.282 5.282 17 C -0.046 4.046 18 C -0.090 4.090 19 C -0.195 4.195 20 C -0.199 4.199 21 N -0.144 5.144 22 C -0.100 4.100 23 C -0.189 4.189 24 H 0.094 0.906 25 H 0.112 0.888 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.107 0.893 29 H 0.228 0.772 30 H 0.140 0.860 31 H 0.125 0.875 32 H 0.115 0.885 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.106 0.894 36 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -5.145 -8.339 0.055 9.799 hybrid contribution 0.435 1.147 -0.237 1.250 sum -4.711 -7.192 -0.182 8.599 Atomic orbital electron populations 1.69826 1.07716 1.29533 1.33781 1.25981 0.94765 1.01614 0.92041 0.86223 0.81034 0.80589 0.78743 1.18239 1.19507 1.19814 1.19736 0.98265 0.91240 1.39129 0.90101 1.17695 0.90791 0.92062 0.87807 1.20977 1.04027 0.92782 1.07215 1.20389 0.94780 0.96676 0.95856 1.18983 1.02286 0.92381 1.12403 1.20537 0.87926 0.97194 0.87436 1.51072 1.11084 1.32064 1.20247 1.25779 0.83485 0.97783 0.97219 1.70213 1.34219 1.15660 1.08062 1.23007 0.87679 0.96953 0.96961 1.19932 0.99431 0.99859 0.89738 1.22967 0.91456 1.02166 1.02861 1.22991 1.02928 0.99405 0.94576 1.77883 1.21722 1.15217 0.99577 1.20490 0.97883 0.92568 0.99045 1.21281 0.99554 0.96689 1.01336 0.90610 0.88815 0.89282 0.89246 0.89338 0.77232 0.86021 0.87511 0.88504 0.88239 0.88393 0.89413 0.86272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.64 10.96 55.55 0.61 -19.03 16 2 C 0.08 1.82 5.14 -17.34 -0.09 1.74 16 3 Si 0.91 17.99 29.59 -169.99 -5.03 12.95 16 4 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 5 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 6 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 7 C -0.45 -11.73 9.05 -37.74 -0.34 -12.07 16 8 H 0.08 2.01 7.91 -52.49 -0.41 1.59 16 9 C 0.12 3.09 5.57 -106.82 -0.60 2.50 16 10 C -0.23 -5.59 9.80 -38.87 -0.38 -5.97 16 11 C -0.06 -1.29 9.67 -39.66 -0.38 -1.67 16 12 C -0.26 -5.29 5.49 -104.33 -0.57 -5.86 16 13 C 0.19 3.11 6.61 -5.20 -0.03 3.07 16 14 N -0.36 -6.36 3.62 -63.81 -0.23 -6.59 16 15 C 0.25 4.24 12.66 -90.65 -1.15 3.10 16 16 N -0.55 -9.90 10.75 -11.97 -0.13 -10.03 16 17 C 0.24 4.20 7.67 -156.85 -1.20 3.00 16 18 C -0.07 -0.97 6.33 -91.78 -0.58 -1.55 16 19 C -0.16 -1.81 10.14 -26.70 -0.27 -2.08 16 20 C -0.16 -1.99 10.24 -26.69 -0.27 -2.27 16 21 N -0.32 -6.08 12.70 32.42 0.41 -5.67 16 22 C -0.08 -1.74 9.67 -39.66 -0.38 -2.12 16 23 C -0.17 -4.19 8.70 -38.87 -0.34 -4.53 16 24 H 0.28 6.40 8.30 -40.82 -0.34 6.06 16 25 H 0.09 2.16 8.06 -52.49 -0.42 1.74 16 26 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 27 H 0.09 1.19 8.08 -51.93 -0.42 0.77 16 28 H 0.09 1.38 8.08 -51.93 -0.42 0.96 16 29 H 0.21 2.69 8.06 -52.49 -0.42 2.27 16 30 H 0.12 1.51 8.14 -51.92 -0.42 1.09 16 31 H 0.11 1.36 7.88 -51.93 -0.41 0.95 16 32 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 34 H 0.10 1.39 8.14 -51.93 -0.42 0.97 16 35 H 0.09 1.62 8.06 -52.48 -0.42 1.20 16 36 H 0.12 3.04 6.16 -52.49 -0.32 2.72 16 LS Contribution 316.88 15.07 4.78 4.78 Total: -1.00 -29.27 316.88 -10.69 -39.96 By element: Atomic # 1 Polarization: 12.84 SS G_CDS: -4.50 Total: 8.34 kcal Atomic # 6 Polarization: -18.12 SS G_CDS: -6.59 Total: -24.71 kcal Atomic # 7 Polarization: -41.98 SS G_CDS: 0.66 Total: -41.32 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -29.27 -10.69 -39.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398971634.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.741 kcal (2) G-P(sol) polarization free energy of solvation -29.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.693 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.962 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds