Wall clock time and date at job start Mon Mar 30 2020 01:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30821 * 1 3 3 Si 1.86794 * 120.00065 * 2 1 4 4 H 1.48496 * 109.47373 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47179 * 299.99787 * 3 2 1 6 6 H 1.48503 * 109.47456 * 59.99361 * 3 2 1 7 7 C 1.39947 * 120.00278 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00688 * 197.74141 * 7 2 1 9 9 C 1.41397 * 119.99746 * 17.73983 * 7 2 1 10 10 C 1.40717 * 120.24553 * 204.28899 * 9 7 2 11 11 C 1.37620 * 119.74444 * 179.70220 * 10 9 7 12 12 C 1.38636 * 120.25102 * 0.27063 * 11 10 9 13 13 C 1.50692 * 119.74883 * 179.97438 * 12 11 10 14 14 N 1.46502 * 109.47212 * 90.00023 * 13 12 11 15 15 C 1.34433 * 126.81785 * 84.68322 * 14 13 12 16 16 N 1.30833 * 108.07159 * 179.89329 * 15 14 13 17 17 C 1.33245 * 109.83225 * 0.38300 * 16 15 14 18 18 C 1.50697 * 125.52528 * 179.72835 * 17 16 15 19 19 C 1.52990 * 117.50416 * 8.78761 * 18 17 16 20 20 C 1.53000 * 117.49887 * 300.12251 * 18 17 16 21 21 N 1.30715 * 108.94366 * 359.76062 * 17 16 15 22 22 C 1.38638 * 120.49555 * 0.02562 * 12 11 10 23 23 C 1.37612 * 120.25475 * 359.97438 * 22 12 11 24 24 H 0.96999 * 120.00115 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.12690 * 359.97139 * 10 9 7 26 26 H 1.08001 * 119.87007 * 180.29792 * 11 10 9 27 27 H 1.09005 * 109.47111 * 209.99845 * 13 12 11 28 28 H 1.08998 * 109.47398 * 329.99950 * 13 12 11 29 29 H 1.07998 * 125.96529 * 0.03784 * 15 14 13 30 30 H 1.09009 * 115.54316 * 154.46051 * 18 17 16 31 31 H 1.09005 * 117.49741 * 0.02562 * 19 18 17 32 32 H 1.08996 * 117.50368 * 145.01921 * 19 18 17 33 33 H 1.08999 * 117.50005 * 214.98302 * 20 18 17 34 34 H 1.08993 * 117.49780 * 359.97438 * 20 18 17 35 35 H 1.08003 * 119.86924 * 179.97438 * 22 12 11 36 36 H 1.07995 * 120.13061 * 180.02562 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 3.7022 1.3464 0.0006 5 1 1.8835 2.3964 -1.2125 6 1 1.8834 2.3965 1.2124 7 6 2.0080 -1.2119 0.0005 8 1 3.0495 -1.2341 0.2855 9 6 1.3514 -2.4075 -0.3720 10 6 1.8271 -3.6499 0.0865 11 6 1.1765 -4.8067 -0.2775 12 6 0.0599 -4.7516 -1.0973 13 6 -0.6435 -6.0254 -1.4893 14 7 -1.6830 -6.3324 -0.5037 15 6 -2.9386 -5.8526 -0.4810 16 7 -3.5512 -6.3675 0.5540 17 6 -2.7204 -7.1705 1.2177 18 6 -3.0590 -7.9403 2.4682 19 6 -4.5228 -7.9575 2.9127 20 6 -3.4943 -7.1376 3.6958 21 7 -1.5640 -7.1817 0.6084 22 6 -0.4139 -3.5336 -1.5599 23 6 0.2208 -2.3642 -1.2087 24 1 -0.4850 0.8400 -0.0004 25 1 2.6969 -3.6951 0.7252 26 1 1.5370 -5.7610 0.0772 27 1 -1.0994 -5.9011 -2.4716 28 1 0.0771 -6.8425 -1.5239 29 1 -3.3675 -5.1642 -1.1941 30 1 -2.4704 -8.8418 2.6390 31 1 -5.2412 -7.4123 2.3004 32 1 -4.8973 -8.8701 3.3764 33 1 -3.1927 -7.5111 4.6743 34 1 -3.5354 -6.0527 3.5990 35 1 -1.2844 -3.5025 -2.1984 36 1 -0.1502 -1.4164 -1.5699 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000398971634.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:09:31 Heat of formation + Delta-G solvation = 111.640772 kcal Electronic energy + Delta-G solvation = -19152.275855 eV Core-core repulsion = 16216.870380 eV Total energy + Delta-G solvation = -2935.405475 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -42.96981 -39.58909 -38.02768 -36.13280 -34.56686 -32.26054 -31.70898 -31.22789 -28.72525 -26.04159 -24.60716 -23.38369 -23.11228 -22.78374 -21.74730 -20.74673 -19.30565 -17.97291 -17.32106 -16.92841 -16.73717 -15.88414 -15.63976 -15.53689 -15.43478 -15.08395 -14.37679 -13.89897 -13.77821 -13.56835 -13.04848 -12.99399 -12.85700 -12.71474 -12.51538 -12.33748 -12.22802 -11.88039 -11.57374 -11.45663 -11.35349 -11.10222 -10.90528 -10.69023 -10.12218 -9.46107 -9.35244 -8.72765 -6.43703 0.61762 0.83697 1.07652 1.35230 1.38154 1.50998 1.74287 1.88056 2.16731 2.67093 3.04408 3.20133 3.57601 3.67659 3.93969 3.94215 4.12601 4.16183 4.22507 4.41757 4.43231 4.57196 4.67369 4.80064 4.92511 4.95764 5.08211 5.17262 5.26288 5.33159 5.36184 5.41367 5.52146 5.61891 5.85336 6.00072 6.02145 6.11163 6.30806 6.61491 6.85609 6.93924 7.20122 8.24114 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024742 B = 0.004153 C = 0.003914 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1131.419765 B = 6740.377188 C = 7152.198175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.818 5.818 2 C 0.037 3.963 3 Si 0.983 3.017 4 H -0.259 1.259 5 H -0.260 1.260 6 H -0.266 1.266 7 C -0.498 4.498 8 H 0.074 0.926 9 C 0.088 3.912 10 C -0.253 4.253 11 C -0.067 4.067 12 C -0.241 4.241 13 C 0.192 3.808 14 N -0.366 5.366 15 C 0.254 3.746 16 N -0.572 5.572 17 C 0.230 3.770 18 C -0.094 4.094 19 C -0.135 4.135 20 C -0.158 4.158 21 N -0.351 5.351 22 C -0.077 4.077 23 C -0.193 4.193 24 H 0.291 0.709 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.131 0.869 28 H 0.098 0.902 29 H 0.247 0.753 30 H 0.136 0.864 31 H 0.093 0.907 32 H 0.130 0.870 33 H 0.126 0.874 34 H 0.073 0.927 35 H 0.125 0.875 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.579 -9.090 -0.578 11.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.443 5.443 2 C -0.179 4.179 3 Si 0.803 3.197 4 H -0.183 1.183 5 H -0.184 1.184 6 H -0.191 1.191 7 C -0.527 4.527 8 H 0.092 0.908 9 C 0.085 3.915 10 C -0.272 4.272 11 C -0.086 4.086 12 C -0.244 4.244 13 C 0.073 3.927 14 N -0.154 5.154 15 C -0.042 4.042 16 N -0.300 5.300 17 C -0.052 4.052 18 C -0.115 4.115 19 C -0.173 4.173 20 C -0.197 4.197 21 N -0.180 5.180 22 C -0.096 4.096 23 C -0.213 4.213 24 H 0.102 0.898 25 H 0.109 0.891 26 H 0.121 0.879 27 H 0.149 0.851 28 H 0.117 0.883 29 H 0.263 0.737 30 H 0.154 0.846 31 H 0.112 0.888 32 H 0.148 0.852 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.143 0.857 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -6.417 -9.289 -0.359 11.296 hybrid contribution 0.733 1.259 -0.111 1.461 sum -5.684 -8.030 -0.470 9.850 Atomic orbital electron populations 1.69860 1.09020 1.30823 1.34644 1.26774 0.95506 1.04566 0.91010 0.85143 0.79365 0.75988 0.79157 1.18271 1.18386 1.19088 1.19943 0.98381 0.92670 1.41662 0.90775 1.18029 0.91898 0.92757 0.88808 1.21135 1.04653 0.93408 1.08028 1.20668 0.95339 0.96504 0.96083 1.19405 1.01082 0.94047 1.09819 1.20643 0.88268 0.95111 0.88685 1.50972 1.11611 1.32501 1.20359 1.26570 0.83057 0.97319 0.97262 1.70258 1.34751 1.16265 1.08761 1.23719 0.87253 0.96588 0.97617 1.20223 1.01656 1.00515 0.89057 1.23034 0.89814 1.02889 1.01537 1.23033 1.03299 0.98096 0.95273 1.77831 1.22788 1.16709 1.00634 1.20853 0.98343 0.91730 0.98669 1.21302 1.00186 0.97469 1.02321 0.89844 0.89127 0.87858 0.85089 0.88321 0.73723 0.84621 0.88844 0.85212 0.85591 0.90801 0.85724 0.87716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.99 10.96 21.83 0.24 -41.75 16 2 C 0.04 1.86 5.14 85.26 0.44 2.29 16 3 Si 0.98 37.50 29.59 68.60 2.03 39.53 16 4 H -0.26 -9.75 7.11 99.48 0.71 -9.05 16 5 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 6 H -0.27 -9.77 7.11 99.48 0.71 -9.06 16 7 C -0.50 -26.81 9.05 23.46 0.21 -26.60 16 8 H 0.07 3.90 7.91 -2.91 -0.02 3.87 16 9 C 0.09 4.71 5.57 -21.29 -0.12 4.59 16 10 C -0.25 -12.64 9.80 22.73 0.22 -12.42 16 11 C -0.07 -2.96 9.67 22.22 0.21 -2.74 16 12 C -0.24 -9.45 5.49 -19.68 -0.11 -9.56 16 13 C 0.19 5.72 6.61 85.63 0.57 6.28 16 14 N -0.37 -12.20 3.62 -355.81 -1.29 -13.49 16 15 C 0.25 7.85 12.66 180.36 2.28 10.13 16 16 N -0.57 -19.57 10.75 -191.80 -2.06 -21.63 16 17 C 0.23 7.92 7.67 138.63 1.06 8.99 16 18 C -0.09 -2.48 6.33 -11.54 -0.07 -2.56 16 19 C -0.13 -2.81 10.14 30.62 0.31 -2.50 16 20 C -0.16 -3.68 10.24 30.62 0.31 -3.36 16 21 N -0.35 -13.08 12.70 -51.33 -0.65 -13.73 16 22 C -0.08 -3.21 9.67 22.22 0.21 -2.99 16 23 C -0.19 -9.72 8.70 22.73 0.20 -9.52 16 24 H 0.29 13.36 8.30 -92.71 -0.77 12.60 16 25 H 0.09 4.40 8.06 -2.91 -0.02 4.38 16 26 H 0.10 4.18 8.06 -2.91 -0.02 4.16 16 27 H 0.13 2.85 8.08 -2.38 -0.02 2.83 16 28 H 0.10 2.78 8.08 -2.39 -0.02 2.76 16 29 H 0.25 5.37 8.06 -2.91 -0.02 5.34 16 30 H 0.14 3.12 8.14 -2.38 -0.02 3.10 16 31 H 0.09 2.22 7.88 -2.38 -0.02 2.20 16 32 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.13 2.21 8.14 -2.39 -0.02 2.19 16 34 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.12 4.19 8.06 -2.91 -0.02 4.16 16 36 H 0.10 5.50 6.16 -2.91 -0.02 5.48 16 Total: -1.00 -65.94 316.88 5.09 -60.85 By element: Atomic # 1 Polarization: 29.10 SS G_CDS: 1.08 Total: 30.19 kcal Atomic # 6 Polarization: -45.70 SS G_CDS: 5.74 Total: -39.97 kcal Atomic # 7 Polarization: -86.84 SS G_CDS: -3.76 Total: -90.60 kcal Atomic # 14 Polarization: 37.50 SS G_CDS: 2.03 Total: 39.53 kcal Total: -65.94 5.09 -60.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000398971634.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.492 kcal (2) G-P(sol) polarization free energy of solvation -65.940 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds