Wall clock time and date at job start Mon Mar 30 2020 00:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34135 * 118.70866 * 2 1 4 4 O 1.21230 * 119.35801 * 359.48392 * 3 2 1 5 5 C 1.50583 * 121.28224 * 179.50014 * 3 2 1 6 6 C 1.53216 * 109.18096 * 29.04450 * 5 3 2 7 7 C 1.53240 * 108.58056 * 304.42769 * 6 5 3 8 8 H 1.09001 * 109.58056 * 175.53729 * 7 6 5 9 9 N 1.46496 * 109.52478 * 295.69890 * 7 6 5 10 10 C 1.34783 * 120.00179 * 204.68232 * 9 7 6 11 11 O 1.21585 * 119.99624 * 359.97438 * 10 9 7 12 12 N 1.34768 * 120.00145 * 179.97438 * 10 9 7 13 13 C 1.46500 * 119.99926 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.47299 * 179.97438 * 13 12 10 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.34145 * 118.70111 * 180.02562 * 2 1 3 23 23 O 1.21216 * 119.36342 * 0.52326 * 22 2 1 24 24 H 1.09004 * 109.47118 * 269.97760 * 1 2 3 25 25 H 1.08999 * 109.46834 * 29.97164 * 1 2 3 26 26 H 1.08999 * 109.47210 * 149.97313 * 1 2 3 27 27 H 1.09002 * 109.52557 * 148.98178 * 5 3 2 28 28 H 1.09004 * 109.52392 * 269.17058 * 5 3 2 29 29 H 1.09002 * 109.62853 * 184.69503 * 6 5 3 30 30 H 1.08997 * 109.60528 * 64.15413 * 6 5 3 31 31 H 0.96997 * 120.00254 * 24.67913 * 9 7 6 32 32 H 0.96997 * 120.00288 * 359.97438 * 12 10 9 33 33 H 1.09004 * 109.47078 * 60.00642 * 13 12 10 34 34 H 1.08993 * 109.47364 * 300.00413 * 13 12 10 35 35 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1094 1.1765 0.0000 4 8 1.4682 2.2053 -0.0095 5 6 3.6136 1.2441 0.0112 6 6 4.1787 -0.0001 -0.6818 7 6 3.6136 -1.2443 0.0116 8 1 3.9422 -2.1386 -0.5179 9 7 4.0903 -1.2922 1.3961 10 6 4.1614 -2.4720 2.0439 11 8 3.8295 -3.4964 1.4794 12 7 4.6004 -2.5161 3.3173 13 6 4.6772 -3.7984 4.0216 14 6 5.1956 -3.5739 5.4188 15 1 5.4427 -2.5758 5.7492 16 6 5.3544 -4.6426 6.2753 17 7 5.0484 -5.8574 5.8747 18 14 5.9962 -4.3643 8.0073 19 1 6.0685 -5.6633 8.7232 20 1 7.3508 -3.7591 7.9419 21 1 5.0797 -3.4491 8.7337 22 6 2.1092 -1.1766 -0.0005 23 8 1.4681 -2.2053 -0.0106 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 3.9421 2.1378 -0.5194 28 1 3.9690 1.2796 1.0411 29 1 5.2659 -0.0001 -0.6047 30 1 3.8836 0.0000 -1.7311 31 1 4.3548 -0.4749 1.8465 32 1 4.8656 -1.6989 3.7675 33 1 5.3524 -4.4667 3.4871 34 1 3.6848 -4.2466 4.0695 35 1 4.7149 -6.0019 4.9754 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000425749388.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:12 Heat of formation + Delta-G solvation = -98.966766 kcal Electronic energy + Delta-G solvation = -20762.985531 eV Core-core repulsion = 17375.305414 eV Total energy + Delta-G solvation = -3387.680117 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.96207 -39.55797 -38.79758 -36.37845 -35.20766 -34.40308 -32.90589 -32.14073 -28.46601 -27.84359 -26.38637 -23.58848 -23.30448 -22.61733 -20.73559 -18.55261 -18.52067 -17.77424 -17.30255 -16.81679 -16.73190 -15.89667 -15.30977 -14.83930 -14.61210 -14.35628 -14.13253 -13.78779 -13.49582 -13.27715 -13.12595 -13.01681 -12.64351 -12.28320 -12.19082 -11.86816 -11.63520 -11.03162 -10.81845 -10.64924 -10.48571 -10.17440 -9.90448 -9.70611 -9.13643 -8.82096 -8.70572 -8.00885 -6.52946 -4.26854 1.27741 2.27633 2.45204 3.14495 3.36719 3.38356 3.52145 3.57595 3.78999 4.10418 4.23745 4.30796 4.42099 4.63980 4.80834 5.06358 5.16612 5.18852 5.20268 5.26125 5.30501 5.39565 5.43676 5.56034 6.34798 6.70500 6.79558 7.20016 7.20561 7.22455 7.33516 7.57899 7.75143 8.25461 8.54959 8.71647 9.09935 9.47088 10.87290 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030126 B = 0.004043 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.199954 B = 6923.698993 C = 7078.628066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.060 3.940 2 N -0.568 5.568 3 C 0.523 3.477 4 O -0.507 6.507 5 C -0.144 4.144 6 C -0.134 4.134 7 C 0.154 3.846 8 H 0.134 0.866 9 N -0.744 5.744 10 C 0.690 3.310 11 O -0.580 6.580 12 N -0.719 5.719 13 C 0.257 3.743 14 C -0.624 4.624 15 H 0.057 0.943 16 C 0.023 3.977 17 N -0.901 5.901 18 Si 1.076 2.924 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.287 1.287 22 C 0.502 3.498 23 O -0.466 6.466 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.088 0.912 27 H 0.119 0.881 28 H 0.110 0.890 29 H 0.105 0.895 30 H 0.095 0.905 31 H 0.396 0.604 32 H 0.389 0.611 33 H 0.017 0.983 34 H 0.016 0.984 35 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.647 16.520 -13.065 21.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.312 5.312 3 C 0.313 3.687 4 O -0.380 6.380 5 C -0.184 4.184 6 C -0.172 4.172 7 C 0.044 3.956 8 H 0.151 0.849 9 N -0.405 5.405 10 C 0.389 3.611 11 O -0.457 6.457 12 N -0.371 5.371 13 C 0.136 3.864 14 C -0.662 4.662 15 H 0.075 0.925 16 C -0.183 4.183 17 N -0.535 5.535 18 Si 0.904 3.096 19 H -0.205 1.205 20 H -0.213 1.213 21 H -0.213 1.213 22 C 0.288 3.712 23 O -0.333 6.333 24 H 0.088 0.912 25 H 0.106 0.894 26 H 0.107 0.893 27 H 0.137 0.863 28 H 0.128 0.872 29 H 0.124 0.876 30 H 0.113 0.887 31 H 0.231 0.769 32 H 0.222 0.778 33 H 0.035 0.965 34 H 0.034 0.966 35 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -2.246 14.654 -12.144 19.164 hybrid contribution -0.306 1.618 -0.940 1.896 sum -2.552 16.272 -13.084 21.035 Atomic orbital electron populations 1.21930 0.77809 1.04559 1.03792 1.46617 1.10082 1.07822 1.66686 1.20944 0.91368 0.82466 0.73945 1.90736 1.68771 1.33105 1.45411 1.21954 0.89953 1.01546 1.04912 1.22128 1.03415 0.91200 1.00470 1.20939 0.87362 1.02171 0.85145 0.84868 1.45098 1.72753 1.09432 1.13177 1.16196 0.79219 0.83192 0.82444 1.90948 1.55228 1.32298 1.67229 1.45515 1.68033 1.12799 1.10800 1.19090 0.96574 0.79595 0.91190 1.22039 1.49892 0.96546 0.97734 0.92513 1.25871 0.95030 0.92293 1.05083 1.70754 1.39705 1.21879 1.21178 0.83440 0.76114 0.75922 0.74173 1.20538 1.21288 1.21329 1.21765 0.92050 0.82479 0.74947 1.90791 1.68150 1.32876 1.41522 0.91197 0.89380 0.89295 0.86285 0.87227 0.87607 0.88693 0.76912 0.77826 0.96527 0.96616 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.66 10.00 59.85 0.60 1.25 16 2 N -0.57 -6.60 2.93 -123.17 -0.36 -6.96 16 3 C 0.52 5.32 7.48 -11.33 -0.08 5.24 16 4 O -0.51 -6.52 16.44 5.60 0.09 -6.43 16 5 C -0.14 -0.86 5.88 -27.83 -0.16 -1.03 16 6 C -0.13 -0.79 5.73 -26.50 -0.15 -0.94 16 7 C 0.15 1.74 2.75 -69.01 -0.19 1.55 16 8 H 0.13 1.70 7.58 -51.93 -0.39 1.31 16 9 N -0.74 -9.67 5.00 -59.75 -0.30 -9.97 16 10 C 0.69 13.51 8.52 -86.92 -0.74 12.77 16 11 O -0.58 -14.09 16.01 5.29 0.08 -14.00 16 12 N -0.72 -14.88 5.55 -66.41 -0.37 -15.24 16 13 C 0.26 6.76 4.74 -5.19 -0.02 6.73 16 14 C -0.62 -16.95 9.28 -34.44 -0.32 -17.27 16 15 H 0.06 1.45 7.60 -52.49 -0.40 1.05 16 16 C 0.02 0.65 5.46 -17.82 -0.10 0.55 16 17 N -0.90 -27.22 13.65 55.43 0.76 -26.46 16 18 Si 1.08 24.17 29.90 -169.99 -5.08 19.08 16 19 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 20 H -0.29 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 22 C 0.50 6.88 7.02 -11.32 -0.08 6.80 16 23 O -0.47 -8.51 16.44 5.61 0.09 -8.42 16 24 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 25 H 0.09 0.85 7.28 -51.93 -0.38 0.47 16 26 H 0.09 0.97 7.28 -51.93 -0.38 0.59 16 27 H 0.12 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.11 0.53 6.81 -51.93 -0.35 0.18 16 29 H 0.11 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.40 3.73 7.16 -40.82 -0.29 3.44 16 32 H 0.39 6.80 8.34 -40.82 -0.34 6.46 16 33 H 0.02 0.48 8.01 -51.93 -0.42 0.06 16 34 H 0.02 0.46 8.00 -51.93 -0.42 0.05 16 35 H 0.27 8.39 7.22 -40.82 -0.29 8.09 16 LS Contribution 301.94 15.07 4.55 4.55 Total: -1.00 -37.49 301.94 -5.94 -43.43 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: -4.15 Total: 4.77 kcal Atomic # 6 Polarization: 16.91 SS G_CDS: -1.25 Total: 15.66 kcal Atomic # 7 Polarization: -58.37 SS G_CDS: -0.27 Total: -58.64 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: 0.27 Total: -28.85 kcal Atomic # 14 Polarization: 24.17 SS G_CDS: -5.08 Total: 19.08 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -37.49 -5.94 -43.43 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425749388.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.540 kcal (2) G-P(sol) polarization free energy of solvation -37.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds