Wall clock time and date at job start Mon Mar 30 2020 00:50:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.34135 * 118.70866 * 2 1 4 4 O 1.21230 * 119.35801 * 359.48392 * 3 2 1 5 5 C 1.50583 * 121.28224 * 179.50014 * 3 2 1 6 6 C 1.53216 * 109.18096 * 29.04450 * 5 3 2 7 7 C 1.53240 * 108.58056 * 304.42769 * 6 5 3 8 8 H 1.09001 * 109.58056 * 175.53729 * 7 6 5 9 9 N 1.46496 * 109.52478 * 295.69890 * 7 6 5 10 10 C 1.34783 * 120.00179 * 204.68232 * 9 7 6 11 11 O 1.21585 * 119.99624 * 359.97438 * 10 9 7 12 12 N 1.34768 * 120.00145 * 179.97438 * 10 9 7 13 13 C 1.46500 * 119.99926 * 179.97438 * 12 10 9 14 14 C 1.50706 * 109.47299 * 179.97438 * 13 12 10 15 15 H 1.07998 * 119.99503 * 0.02562 * 14 13 12 16 16 C 1.37871 * 120.00434 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99826 * 359.72891 * 16 14 13 18 18 Si 1.86800 * 120.00406 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47364 * 179.72558 * 18 16 14 20 20 H 1.48508 * 109.46883 * 299.72681 * 18 16 14 21 21 H 1.48497 * 109.46870 * 59.72491 * 18 16 14 22 22 C 1.34145 * 118.70111 * 180.02562 * 2 1 3 23 23 O 1.21216 * 119.36342 * 0.52326 * 22 2 1 24 24 H 1.09004 * 109.47118 * 269.97760 * 1 2 3 25 25 H 1.08999 * 109.46834 * 29.97164 * 1 2 3 26 26 H 1.08999 * 109.47210 * 149.97313 * 1 2 3 27 27 H 1.09002 * 109.52557 * 148.98178 * 5 3 2 28 28 H 1.09004 * 109.52392 * 269.17058 * 5 3 2 29 29 H 1.09002 * 109.62853 * 184.69503 * 6 5 3 30 30 H 1.08997 * 109.60528 * 64.15413 * 6 5 3 31 31 H 0.96997 * 120.00254 * 24.67913 * 9 7 6 32 32 H 0.96997 * 120.00288 * 359.97438 * 12 10 9 33 33 H 1.09004 * 109.47078 * 60.00642 * 13 12 10 34 34 H 1.08993 * 109.47364 * 300.00413 * 13 12 10 35 35 H 0.97000 * 120.00236 * 0.27947 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1094 1.1765 0.0000 4 8 1.4682 2.2053 -0.0095 5 6 3.6136 1.2441 0.0112 6 6 4.1787 -0.0001 -0.6818 7 6 3.6136 -1.2443 0.0116 8 1 3.9422 -2.1386 -0.5179 9 7 4.0903 -1.2922 1.3961 10 6 4.1614 -2.4720 2.0439 11 8 3.8295 -3.4964 1.4794 12 7 4.6004 -2.5161 3.3173 13 6 4.6772 -3.7984 4.0216 14 6 5.1956 -3.5739 5.4188 15 1 5.4427 -2.5758 5.7492 16 6 5.3544 -4.6426 6.2753 17 7 5.0484 -5.8574 5.8747 18 14 5.9962 -4.3643 8.0073 19 1 6.0685 -5.6633 8.7232 20 1 7.3508 -3.7591 7.9419 21 1 5.0797 -3.4491 8.7337 22 6 2.1092 -1.1766 -0.0005 23 8 1.4681 -2.2053 -0.0106 24 1 -0.3633 -0.0004 1.0277 25 1 -0.3633 0.8902 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 3.9421 2.1378 -0.5194 28 1 3.9690 1.2796 1.0411 29 1 5.2659 -0.0001 -0.6047 30 1 3.8836 0.0000 -1.7311 31 1 4.3548 -0.4749 1.8465 32 1 4.8656 -1.6989 3.7675 33 1 5.3524 -4.4667 3.4871 34 1 3.6848 -4.2466 4.0695 35 1 4.7149 -6.0019 4.9754 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000425749388.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:11 Heat of formation + Delta-G solvation = -130.297835 kcal Electronic energy + Delta-G solvation = -20764.344149 eV Core-core repulsion = 17375.305414 eV Total energy + Delta-G solvation = -3389.038734 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.93053 -40.98583 -39.95626 -37.47243 -36.45558 -36.11930 -34.60289 -33.48375 -29.63438 -28.75118 -28.13376 -24.98853 -24.44021 -23.85439 -22.30219 -20.17980 -19.56537 -18.74759 -18.61917 -18.23251 -17.72888 -17.14484 -16.60585 -16.09434 -15.80248 -15.67104 -15.57219 -15.21892 -14.73173 -14.56777 -14.21955 -14.17986 -14.10304 -13.78983 -13.51711 -13.08726 -12.53875 -12.47653 -12.32028 -11.90377 -11.82173 -11.45474 -11.31998 -10.92083 -10.91159 -10.75860 -10.47098 -9.84463 -8.77948 -6.53603 0.29083 1.32631 1.46871 1.57998 1.66468 1.85069 1.92632 2.08398 2.57430 2.83569 3.10387 3.35137 3.43418 3.50132 3.70970 4.17436 4.21580 4.26937 4.32726 4.43144 4.64705 4.73428 4.78473 4.86703 4.98113 5.01870 5.18609 5.42824 5.48347 5.81016 5.98614 6.12330 6.29797 6.35777 6.61681 7.08407 7.30872 7.55337 8.61498 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030126 B = 0.004043 C = 0.003955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 929.199954 B = 6923.698993 C = 7078.628066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.569 5.569 3 C 0.521 3.479 4 O -0.532 6.532 5 C -0.137 4.137 6 C -0.117 4.117 7 C 0.150 3.850 8 H 0.117 0.883 9 N -0.715 5.715 10 C 0.689 3.311 11 O -0.631 6.631 12 N -0.714 5.714 13 C 0.272 3.728 14 C -0.627 4.627 15 H 0.079 0.921 16 C -0.033 4.033 17 N -0.931 5.931 18 Si 1.131 2.869 19 H -0.288 1.288 20 H -0.260 1.260 21 H -0.265 1.265 22 C 0.504 3.496 23 O -0.523 6.523 24 H 0.066 0.934 25 H 0.100 0.900 26 H 0.081 0.919 27 H 0.152 0.848 28 H 0.130 0.870 29 H 0.139 0.861 30 H 0.115 0.885 31 H 0.419 0.581 32 H 0.408 0.592 33 H -0.014 1.014 34 H -0.024 1.024 35 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.207 19.943 -12.754 23.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.312 5.312 3 C 0.313 3.687 4 O -0.407 6.407 5 C -0.176 4.176 6 C -0.154 4.154 7 C 0.041 3.959 8 H 0.134 0.866 9 N -0.376 5.376 10 C 0.389 3.611 11 O -0.512 6.512 12 N -0.368 5.368 13 C 0.148 3.852 14 C -0.665 4.665 15 H 0.097 0.903 16 C -0.231 4.231 17 N -0.567 5.567 18 Si 0.950 3.050 19 H -0.214 1.214 20 H -0.185 1.185 21 H -0.190 1.190 22 C 0.291 3.709 23 O -0.395 6.395 24 H 0.085 0.915 25 H 0.119 0.881 26 H 0.100 0.900 27 H 0.170 0.830 28 H 0.147 0.853 29 H 0.157 0.843 30 H 0.134 0.866 31 H 0.258 0.742 32 H 0.244 0.756 33 H 0.004 0.996 34 H -0.006 1.006 35 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.375 18.221 -11.872 21.750 hybrid contribution -0.969 0.626 -1.141 1.623 sum -1.344 18.846 -13.013 22.942 Atomic orbital electron populations 1.21970 0.78011 1.04843 1.03698 1.46733 1.10354 1.08002 1.66146 1.21849 0.93155 0.81167 0.72488 1.90735 1.69833 1.33661 1.46483 1.22132 0.86057 1.02749 1.06646 1.22183 1.04953 0.87654 1.00633 1.21195 0.85913 1.04824 0.83977 0.86551 1.44718 1.71140 1.08048 1.13740 1.16362 0.78452 0.84323 0.81953 1.90925 1.57072 1.34941 1.68243 1.45077 1.68727 1.11640 1.11370 1.18551 0.93543 0.81455 0.91652 1.22407 1.48802 0.97572 0.97716 0.90292 1.27647 0.94400 0.91651 1.09411 1.70902 1.41982 1.23538 1.20255 0.82780 0.77156 0.76039 0.69036 1.21415 1.18509 1.19035 1.22236 0.92995 0.82138 0.73489 1.90774 1.69448 1.34899 1.44337 0.91533 0.88094 0.89991 0.83043 0.85266 0.84316 0.86636 0.74193 0.75597 0.99629 1.00582 0.93731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.23 10.00 127.77 1.28 2.51 16 2 N -0.57 -12.64 2.93 -781.14 -2.29 -14.92 16 3 C 0.52 9.17 7.48 87.72 0.66 9.82 16 4 O -0.53 -12.43 16.44 -2.88 -0.05 -12.48 16 5 C -0.14 -0.96 5.88 29.88 0.18 -0.79 16 6 C -0.12 -0.84 5.73 30.75 0.18 -0.67 16 7 C 0.15 3.13 2.75 44.29 0.12 3.25 16 8 H 0.12 2.93 7.58 -2.39 -0.02 2.91 16 9 N -0.72 -17.15 5.00 -461.19 -2.30 -19.46 16 10 C 0.69 26.99 8.52 179.06 1.53 28.52 16 11 O -0.63 -31.86 16.01 -3.98 -0.06 -31.92 16 12 N -0.71 -29.35 5.55 -482.30 -2.68 -32.03 16 13 C 0.27 14.76 4.74 85.64 0.41 15.16 16 14 C -0.63 -33.90 9.28 25.60 0.24 -33.66 16 15 H 0.08 3.84 7.60 -2.91 -0.02 3.82 16 16 C -0.03 -1.82 5.46 84.65 0.46 -1.36 16 17 N -0.93 -57.84 13.65 21.45 0.29 -57.55 16 18 Si 1.13 47.30 29.90 68.60 2.05 49.35 16 19 H -0.29 -12.39 7.11 99.48 0.71 -11.69 16 20 H -0.26 -9.77 7.11 99.48 0.71 -9.07 16 21 H -0.27 -10.14 7.11 99.48 0.71 -9.44 16 22 C 0.50 13.68 7.02 87.72 0.62 14.29 16 23 O -0.52 -19.97 16.44 -2.83 -0.05 -20.02 16 24 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 25 H 0.10 1.90 7.28 -2.39 -0.02 1.89 16 26 H 0.08 1.89 7.28 -2.39 -0.02 1.87 16 27 H 0.15 0.29 8.14 -2.39 -0.02 0.27 16 28 H 0.13 0.50 6.81 -2.38 -0.02 0.48 16 29 H 0.14 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.12 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.42 6.29 7.16 -92.71 -0.66 5.62 16 32 H 0.41 13.42 8.34 -92.71 -0.77 12.64 16 33 H -0.01 -0.85 8.01 -2.39 -0.02 -0.87 16 34 H -0.02 -1.46 8.00 -2.39 -0.02 -1.48 16 35 H 0.25 16.42 7.22 -92.71 -0.67 15.75 16 Total: -1.00 -87.40 301.94 0.38 -87.02 By element: Atomic # 1 Polarization: 15.13 SS G_CDS: -0.19 Total: 14.94 kcal Atomic # 6 Polarization: 31.42 SS G_CDS: 5.65 Total: 37.08 kcal Atomic # 7 Polarization: -116.98 SS G_CDS: -6.98 Total: -123.96 kcal Atomic # 8 Polarization: -64.26 SS G_CDS: -0.16 Total: -64.42 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.05 Total: 49.35 kcal Total: -87.40 0.38 -87.02 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000425749388.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.280 kcal (2) G-P(sol) polarization free energy of solvation -87.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.018 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds