Wall clock time and date at job start Mon Mar 30 2020 00:58:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00390 * 2 1 4 4 C 1.52998 * 109.47008 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47153 * 65.00241 * 4 3 2 6 6 C 1.36933 * 120.00015 * 264.42561 * 5 4 3 7 7 H 1.07999 * 120.00130 * 146.15880 * 6 5 4 8 8 C 1.38812 * 120.00131 * 326.16624 * 6 5 4 9 9 N 1.31624 * 119.99752 * 337.62553 * 8 6 5 10 10 Si 1.86795 * 120.00391 * 157.63307 * 8 6 5 11 11 H 1.48499 * 109.47378 * 89.99425 * 10 8 6 12 12 H 1.48493 * 109.47495 * 209.99953 * 10 8 6 13 13 H 1.48507 * 109.47096 * 329.99792 * 10 8 6 14 14 C 1.46497 * 119.99850 * 84.42940 * 5 4 3 15 15 C 1.50701 * 109.47277 * 90.00181 * 14 5 4 16 16 C 1.38167 * 119.96373 * 89.99603 * 15 14 5 17 17 C 1.38731 * 119.99782 * 179.97438 * 16 15 14 18 18 O 1.35901 * 120.04516 * 179.97438 * 17 16 15 19 19 C 1.38714 * 119.91177 * 0.02562 * 17 16 15 20 20 C 1.38335 * 119.92078 * 0.02562 * 19 17 16 21 21 F 1.35102 * 119.99867 * 179.97438 * 20 19 17 22 22 C 1.38211 * 119.95692 * 269.72226 * 15 14 5 23 23 H 1.09000 * 109.47472 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47103 * 299.99845 * 1 2 3 25 25 H 1.09007 * 109.47338 * 59.99364 * 1 2 3 26 26 H 1.09003 * 109.46697 * 60.00212 * 3 2 1 27 27 H 1.09004 * 109.47172 * 300.00410 * 3 2 1 28 28 H 1.08999 * 109.47116 * 304.99955 * 4 3 2 29 29 H 1.09003 * 109.46686 * 185.00135 * 4 3 2 30 30 H 0.96996 * 119.99600 * 179.97438 * 9 8 6 31 31 H 1.09006 * 109.47309 * 209.99667 * 14 5 4 32 32 H 1.09002 * 109.47598 * 329.99645 * 14 5 4 33 33 H 1.08005 * 120.00344 * 359.97438 * 16 15 14 34 34 H 0.96696 * 114.00169 * 89.99926 * 18 17 16 35 35 H 1.08000 * 120.03868 * 179.97438 * 19 17 16 36 36 H 1.07996 * 119.95651 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9756 0.5642 -1.2528 6 6 4.2066 -0.7845 -1.3046 7 1 3.9948 -1.3342 -2.2098 8 6 4.7126 -1.4452 -0.1937 9 7 5.3732 -0.7747 0.7264 10 14 4.4565 -3.2858 -0.0045 11 1 5.5855 -4.0108 -0.6409 12 1 4.3965 -3.6316 1.4383 13 1 3.1835 -3.6785 -0.6609 14 6 4.1688 1.3870 -2.4494 15 6 5.5899 1.8868 -2.4914 16 6 6.5648 1.1424 -3.1274 17 6 7.8731 1.6021 -3.1669 18 8 8.8328 0.8704 -3.7917 19 6 8.2006 2.8091 -2.5668 20 6 7.2219 3.5511 -1.9300 21 9 7.5393 4.7266 -1.3446 22 6 5.9153 3.0921 -1.8984 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8514 0.5680 0.8409 29 1 3.9786 2.1763 0.0889 30 1 5.7265 -1.2364 1.5029 31 1 3.9678 0.7887 -3.3381 32 1 3.4857 2.2360 -2.4209 33 1 6.3083 0.2026 -3.5938 34 1 8.9395 1.0806 -4.7295 35 1 9.2185 3.1687 -2.5960 36 1 5.1510 3.6743 -1.4053 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453597395.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:27 Heat of formation + Delta-G solvation = -83.927185 kcal Electronic energy + Delta-G solvation = -20895.160113 eV Core-core repulsion = 17488.212199 eV Total energy + Delta-G solvation = -3406.947914 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -48.48862 -39.18767 -37.33753 -36.50775 -35.00359 -31.80142 -30.52020 -29.16927 -28.55718 -25.73080 -25.69148 -23.21692 -22.15758 -21.50533 -20.06527 -17.87289 -16.83210 -16.17974 -16.03843 -15.76668 -15.61568 -15.18490 -15.10466 -14.67718 -14.20021 -14.02849 -13.62242 -13.45793 -13.26885 -12.89959 -11.91064 -11.76546 -11.63891 -11.41480 -11.03384 -10.98814 -10.86696 -10.72859 -10.57273 -10.41877 -10.10222 -9.97156 -9.75169 -8.88639 -8.45973 -8.25201 -8.08595 -6.67159 -5.78487 -3.27020 1.63246 1.71001 3.42263 3.49352 3.54470 3.99200 4.32603 4.54868 4.64057 4.90483 5.26766 5.37850 5.44437 5.54097 5.65238 5.72550 5.77034 5.92161 5.97910 6.04127 6.10911 6.22391 6.28477 6.43585 6.52173 6.58811 6.64668 6.72866 6.82980 7.14885 7.31200 7.63647 7.81671 7.95650 8.01868 8.50128 9.15073 9.79585 10.32071 11.23930 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.016924 B = 0.006822 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.027075 B = 4103.219966 C = 5069.029247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.047 3.953 4 C 0.141 3.859 5 N -0.561 5.561 6 C -0.242 4.242 7 H 0.062 0.938 8 C 0.017 3.983 9 N -0.884 5.884 10 Si 0.900 3.100 11 H -0.289 1.289 12 H -0.290 1.290 13 H -0.277 1.277 14 C 0.172 3.828 15 C -0.032 4.032 16 C -0.130 4.130 17 C 0.128 3.872 18 O -0.496 6.496 19 C -0.204 4.204 20 C 0.106 3.894 21 F -0.148 7.148 22 C -0.158 4.158 23 H 0.075 0.925 24 H 0.026 0.974 25 H 0.029 0.971 26 H 0.027 0.973 27 H 0.028 0.972 28 H 0.110 0.890 29 H 0.040 0.960 30 H 0.255 0.745 31 H 0.059 0.941 32 H 0.048 0.952 33 H 0.130 0.870 34 H 0.384 0.616 35 H 0.128 0.872 36 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.903 7.045 -6.523 9.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.275 6.275 3 C -0.032 4.032 4 C 0.014 3.986 5 N -0.279 5.279 6 C -0.371 4.371 7 H 0.080 0.920 8 C -0.183 4.183 9 N -0.526 5.526 10 Si 0.730 3.270 11 H -0.216 1.216 12 H -0.216 1.216 13 H -0.202 1.202 14 C 0.046 3.954 15 C -0.037 4.037 16 C -0.149 4.149 17 C 0.083 3.917 18 O -0.305 6.305 19 C -0.224 4.224 20 C 0.087 3.913 21 F -0.127 7.127 22 C -0.178 4.178 23 H 0.093 0.907 24 H 0.045 0.955 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.046 0.954 28 H 0.127 0.873 29 H 0.058 0.942 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.148 0.852 34 H 0.239 0.761 35 H 0.146 0.854 36 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -1.672 6.569 -5.763 8.897 hybrid contribution -0.104 -0.258 0.048 0.282 sum -1.776 6.311 -5.714 8.697 Atomic orbital electron populations 1.22637 0.84114 1.01531 0.98459 1.88200 1.16677 1.27733 1.94845 1.23387 0.98681 0.84140 0.97030 1.21095 0.87394 0.97150 0.92929 1.43962 1.73863 1.03919 1.06130 1.18939 1.36330 0.82068 0.99803 0.91999 1.25044 0.96393 0.97923 0.98958 1.69973 1.34908 1.35561 1.12185 0.86346 0.78080 0.85562 0.77037 1.21589 1.21614 1.20200 1.20168 0.88168 0.94328 0.92736 1.20886 1.00158 0.90811 0.91808 1.21291 0.91224 1.00401 1.02010 1.18129 0.87480 0.89623 0.96462 1.84866 1.56270 1.62382 1.27015 1.21034 0.99407 0.96429 1.05576 1.17408 0.93751 0.82734 0.97411 1.91443 1.93663 1.45246 1.82324 1.20939 0.94481 0.98437 1.03932 0.90683 0.95496 0.95240 0.95470 0.95363 0.87272 0.94210 0.93528 0.92259 0.93353 0.85177 0.76113 0.85405 0.85610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.36 -7.63 10.44 -35.23 -0.37 -7.99 16 3 C 0.05 0.91 6.28 37.16 0.23 1.14 16 4 C 0.14 3.19 5.63 -4.04 -0.02 3.17 16 5 N -0.56 -13.20 2.39 -174.61 -0.42 -13.62 16 6 C -0.24 -6.38 9.28 -15.06 -0.14 -6.52 16 7 H 0.06 1.63 7.92 -52.49 -0.42 1.22 16 8 C 0.02 0.47 4.91 -17.43 -0.09 0.39 16 9 N -0.88 -25.36 11.35 55.49 0.63 -24.73 16 10 Si 0.90 22.05 29.61 -169.99 -5.03 17.02 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.17 3.37 5.81 -5.19 -0.03 3.34 16 15 C -0.03 -0.62 5.46 -104.66 -0.57 -1.19 16 16 C -0.13 -2.46 9.64 -39.43 -0.38 -2.84 16 17 C 0.13 2.25 6.70 -39.22 -0.26 1.99 16 18 O -0.50 -7.69 13.50 -19.43 -0.26 -7.95 16 19 C -0.20 -3.52 9.97 -39.37 -0.39 -3.91 16 20 C 0.11 1.91 7.30 -39.44 -0.29 1.62 16 21 F -0.15 -2.58 17.27 2.25 0.04 -2.55 16 22 C -0.16 -2.90 9.68 -39.49 -0.38 -3.28 16 23 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 24 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 25 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 26 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 27 H 0.03 0.51 8.11 -51.93 -0.42 0.09 16 28 H 0.11 2.90 5.34 -51.93 -0.28 2.62 16 29 H 0.04 0.85 8.11 -51.93 -0.42 0.43 16 30 H 0.25 7.14 8.31 -40.82 -0.34 6.81 16 31 H 0.06 1.11 7.98 -51.93 -0.41 0.70 16 32 H 0.05 0.84 7.99 -51.93 -0.41 0.42 16 33 H 0.13 2.46 8.06 -52.48 -0.42 2.04 16 34 H 0.38 3.62 9.06 45.56 0.41 4.03 16 35 H 0.13 1.94 8.06 -52.49 -0.42 1.52 16 36 H 0.13 2.13 8.06 -52.49 -0.42 1.70 16 LS Contribution 317.12 15.07 4.78 4.78 Total: -1.00 -31.16 317.12 -5.89 -37.05 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -4.05 Total: 2.50 kcal Atomic # 6 Polarization: -3.30 SS G_CDS: -1.21 Total: -4.51 kcal Atomic # 7 Polarization: -38.57 SS G_CDS: 0.21 Total: -38.36 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.63 Total: -15.95 kcal Atomic # 9 Polarization: -2.58 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.02 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -31.16 -5.89 -37.05 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453597395.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.873 kcal (2) G-P(sol) polarization free energy of solvation -31.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.054 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds