Wall clock time and date at job start Mon Mar 30 2020 00:58:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42900 * 114.00390 * 2 1 4 4 C 1.52998 * 109.47008 * 180.02562 * 3 2 1 5 5 N 1.46503 * 109.47153 * 65.00241 * 4 3 2 6 6 C 1.36933 * 120.00015 * 264.42561 * 5 4 3 7 7 H 1.07999 * 120.00130 * 146.15880 * 6 5 4 8 8 C 1.38812 * 120.00131 * 326.16624 * 6 5 4 9 9 N 1.31624 * 119.99752 * 337.62553 * 8 6 5 10 10 Si 1.86795 * 120.00391 * 157.63307 * 8 6 5 11 11 H 1.48499 * 109.47378 * 89.99425 * 10 8 6 12 12 H 1.48493 * 109.47495 * 209.99953 * 10 8 6 13 13 H 1.48507 * 109.47096 * 329.99792 * 10 8 6 14 14 C 1.46497 * 119.99850 * 84.42940 * 5 4 3 15 15 C 1.50701 * 109.47277 * 90.00181 * 14 5 4 16 16 C 1.38167 * 119.96373 * 89.99603 * 15 14 5 17 17 C 1.38731 * 119.99782 * 179.97438 * 16 15 14 18 18 O 1.35901 * 120.04516 * 179.97438 * 17 16 15 19 19 C 1.38714 * 119.91177 * 0.02562 * 17 16 15 20 20 C 1.38335 * 119.92078 * 0.02562 * 19 17 16 21 21 F 1.35102 * 119.99867 * 179.97438 * 20 19 17 22 22 C 1.38211 * 119.95692 * 269.72226 * 15 14 5 23 23 H 1.09000 * 109.47472 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.47103 * 299.99845 * 1 2 3 25 25 H 1.09007 * 109.47338 * 59.99364 * 1 2 3 26 26 H 1.09003 * 109.46697 * 60.00212 * 3 2 1 27 27 H 1.09004 * 109.47172 * 300.00410 * 3 2 1 28 28 H 1.08999 * 109.47116 * 304.99955 * 4 3 2 29 29 H 1.09003 * 109.46686 * 185.00135 * 4 3 2 30 30 H 0.96996 * 119.99600 * 179.97438 * 9 8 6 31 31 H 1.09006 * 109.47309 * 209.99667 * 14 5 4 32 32 H 1.09002 * 109.47598 * 329.99645 * 14 5 4 33 33 H 1.08005 * 120.00344 * 359.97438 * 16 15 14 34 34 H 0.96696 * 114.00169 * 89.99926 * 18 17 16 35 35 H 1.08000 * 120.03868 * 179.97438 * 19 17 16 36 36 H 1.07996 * 119.95651 * 0.02562 * 22 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 3.9756 0.5642 -1.2528 6 6 4.2066 -0.7845 -1.3046 7 1 3.9948 -1.3342 -2.2098 8 6 4.7126 -1.4452 -0.1937 9 7 5.3732 -0.7747 0.7264 10 14 4.4565 -3.2858 -0.0045 11 1 5.5855 -4.0108 -0.6409 12 1 4.3965 -3.6316 1.4383 13 1 3.1835 -3.6785 -0.6609 14 6 4.1688 1.3870 -2.4494 15 6 5.5899 1.8868 -2.4914 16 6 6.5648 1.1424 -3.1274 17 6 7.8731 1.6021 -3.1669 18 8 8.8328 0.8704 -3.7917 19 6 8.2006 2.8091 -2.5668 20 6 7.2219 3.5511 -1.9300 21 9 7.5393 4.7266 -1.3446 22 6 5.9153 3.0921 -1.8984 23 1 -0.3634 -1.0276 0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5140 -0.8900 26 1 1.6887 1.8463 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8514 0.5680 0.8409 29 1 3.9786 2.1763 0.0889 30 1 5.7265 -1.2364 1.5029 31 1 3.9678 0.7887 -3.3381 32 1 3.4857 2.2360 -2.4209 33 1 6.3083 0.2026 -3.5938 34 1 8.9395 1.0806 -4.7295 35 1 9.2185 3.1687 -2.5960 36 1 5.1510 3.6743 -1.4053 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453597395.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:26 Heat of formation + Delta-G solvation = -104.445383 kcal Electronic energy + Delta-G solvation = -20896.049849 eV Core-core repulsion = 17488.212199 eV Total energy + Delta-G solvation = -3407.837649 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.88082 -40.57635 -38.87376 -37.89997 -36.63518 -33.61117 -32.11646 -30.57878 -30.16422 -27.43851 -27.06094 -24.92235 -23.57490 -23.01914 -21.71180 -19.25738 -18.63318 -17.60870 -17.43835 -17.26426 -17.02722 -16.69773 -16.57647 -16.43424 -15.57411 -15.56946 -15.32536 -15.09630 -14.68171 -14.39821 -13.47196 -13.31770 -13.22126 -12.88350 -12.71714 -12.61792 -12.39611 -12.35157 -12.26625 -11.97844 -11.85406 -11.59830 -11.49258 -10.45387 -10.32003 -9.68304 -9.50295 -8.56796 -7.77876 -5.28946 0.23895 0.28524 1.46365 1.50254 1.59173 2.51918 2.65322 3.01644 3.22545 3.37955 3.54071 3.81367 3.92566 4.08032 4.22328 4.43032 4.50151 4.55932 4.57664 4.66683 4.75221 4.80696 4.87506 4.95411 4.99603 5.06832 5.12987 5.19595 5.38610 5.70555 5.73274 5.82959 5.94497 6.45866 6.67814 6.87585 7.22020 7.91188 8.39256 9.21038 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.016924 B = 0.006822 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.027075 B = 4103.219966 C = 5069.029247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.400 6.400 3 C 0.055 3.945 4 C 0.139 3.861 5 N -0.576 5.576 6 C -0.234 4.234 7 H 0.056 0.944 8 C -0.030 4.030 9 N -0.916 5.916 10 Si 0.946 3.054 11 H -0.289 1.289 12 H -0.297 1.297 13 H -0.274 1.274 14 C 0.174 3.826 15 C -0.042 4.042 16 C -0.147 4.147 17 C 0.133 3.867 18 O -0.504 6.504 19 C -0.201 4.201 20 C 0.100 3.900 21 F -0.145 7.145 22 C -0.163 4.163 23 H 0.082 0.918 24 H 0.045 0.955 25 H 0.045 0.955 26 H 0.047 0.953 27 H 0.046 0.954 28 H 0.071 0.929 29 H 0.047 0.953 30 H 0.246 0.754 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.124 0.876 34 H 0.412 0.588 35 H 0.150 0.850 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.230 8.033 -7.516 11.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.319 6.319 3 C -0.024 4.024 4 C 0.013 3.987 5 N -0.294 5.294 6 C -0.365 4.365 7 H 0.074 0.926 8 C -0.227 4.227 9 N -0.561 5.561 10 Si 0.775 3.225 11 H -0.216 1.216 12 H -0.224 1.224 13 H -0.199 1.199 14 C 0.048 3.952 15 C -0.046 4.046 16 C -0.166 4.166 17 C 0.088 3.912 18 O -0.317 6.317 19 C -0.221 4.221 20 C 0.081 3.919 21 F -0.124 7.124 22 C -0.183 4.183 23 H 0.100 0.900 24 H 0.064 0.936 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.089 0.911 29 H 0.065 0.935 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.142 0.858 34 H 0.271 0.729 35 H 0.168 0.832 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.005 7.578 -6.809 10.383 hybrid contribution 0.021 -0.465 0.217 0.514 sum -1.984 7.113 -6.592 9.899 Atomic orbital electron populations 1.22824 0.81449 1.02648 1.00121 1.88121 1.19719 1.28811 1.95220 1.23207 0.96364 0.84022 0.98760 1.20987 0.89740 0.96459 0.91492 1.43998 1.74694 1.03580 1.07150 1.19045 1.34446 0.83834 0.99144 0.92646 1.25524 0.97313 1.00454 0.99388 1.70101 1.37037 1.36253 1.12685 0.85622 0.77840 0.82722 0.76283 1.21638 1.22411 1.19931 1.20220 0.89073 0.94736 0.91151 1.20821 0.99777 0.91509 0.92509 1.21409 0.92176 1.00391 1.02640 1.18121 0.87266 0.89560 0.96278 1.84794 1.55344 1.62243 1.29313 1.21291 1.00364 0.95969 1.04453 1.17513 0.93909 0.82978 0.97520 1.91452 1.93614 1.45024 1.82269 1.21082 0.95185 0.98336 1.03698 0.89982 0.93626 0.93627 0.93457 0.93612 0.91131 0.93460 0.94470 0.91871 0.90864 0.85767 0.72874 0.83182 0.84404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.78 11.01 113.37 1.25 2.03 16 2 O -0.40 -16.65 10.44 -148.98 -1.56 -18.21 16 3 C 0.05 2.06 6.28 71.98 0.45 2.51 16 4 C 0.14 6.28 5.63 86.38 0.49 6.76 16 5 N -0.58 -26.82 2.39 -706.34 -1.69 -28.51 16 6 C -0.23 -12.40 9.28 84.03 0.78 -11.62 16 7 H 0.06 2.94 7.92 -2.91 -0.02 2.92 16 8 C -0.03 -1.67 4.91 84.86 0.42 -1.25 16 9 N -0.92 -53.80 11.35 21.65 0.25 -53.56 16 10 Si 0.95 46.06 29.61 68.60 2.03 48.09 16 11 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 12 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 13 H -0.27 -13.03 7.11 99.48 0.71 -12.32 16 14 C 0.17 6.57 5.81 85.63 0.50 7.07 16 15 C -0.04 -1.59 5.46 -19.89 -0.11 -1.69 16 16 C -0.15 -5.43 9.64 22.37 0.22 -5.21 16 17 C 0.13 4.44 6.70 22.50 0.15 4.59 16 18 O -0.50 -14.47 13.50 -92.44 -1.25 -15.72 16 19 C -0.20 -6.47 9.97 22.41 0.22 -6.25 16 20 C 0.10 3.41 7.30 22.36 0.16 3.57 16 21 F -0.14 -4.77 17.27 44.97 0.78 -3.99 16 22 C -0.16 -5.73 9.68 22.33 0.22 -5.52 16 23 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 24 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 25 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 26 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.05 1.54 8.11 -2.38 -0.02 1.52 16 28 H 0.07 3.82 5.34 -2.39 -0.01 3.81 16 29 H 0.05 1.99 8.11 -2.39 -0.02 1.97 16 30 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 31 H 0.06 2.31 7.98 -2.38 -0.02 2.29 16 32 H 0.07 2.37 7.99 -2.39 -0.02 2.35 16 33 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.41 6.64 9.06 -74.06 -0.67 5.97 16 35 H 0.15 4.10 8.06 -2.91 -0.02 4.08 16 36 H 0.14 4.40 8.06 -2.91 -0.02 4.38 16 Total: -1.00 -66.60 317.12 3.72 -62.88 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.42 Total: 14.02 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 4.74 Total: -5.02 kcal Atomic # 7 Polarization: -80.62 SS G_CDS: -1.44 Total: -82.06 kcal Atomic # 8 Polarization: -31.12 SS G_CDS: -2.80 Total: -33.93 kcal Atomic # 9 Polarization: -4.77 SS G_CDS: 0.78 Total: -3.99 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -66.60 3.72 -62.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453597395.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.563 kcal (2) G-P(sol) polarization free energy of solvation -66.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds