Wall clock time and date at job start Mon Mar 30 2020 00:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00059 * 2 1 4 4 C 1.52997 * 109.47471 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46839 * 65.00769 * 4 3 2 6 6 C 1.36941 * 119.99692 * 270.00286 * 5 4 3 7 7 H 1.07998 * 120.00097 * 141.76160 * 6 5 4 8 8 C 1.38811 * 120.00052 * 321.75249 * 6 5 4 9 9 N 1.31620 * 120.00294 * 156.56238 * 8 6 5 10 10 Si 1.86807 * 120.00060 * 336.56639 * 8 6 5 11 11 H 1.48499 * 109.47092 * 95.53574 * 10 8 6 12 12 H 1.48494 * 109.47110 * 215.53427 * 10 8 6 13 13 H 1.48501 * 109.46917 * 335.53359 * 10 8 6 14 14 C 1.46498 * 120.00123 * 89.99550 * 5 4 3 15 15 C 1.53002 * 109.46753 * 87.29833 * 14 5 4 16 16 C 1.52995 * 109.46949 * 179.97438 * 15 14 5 17 17 C 1.50701 * 109.47098 * 180.02562 * 16 15 14 18 18 C 1.38422 * 122.53944 * 270.00285 * 17 16 15 19 19 C 1.33392 * 114.92235 * 180.02562 * 18 17 16 20 20 S 1.75884 * 109.59203 * 359.75580 * 19 18 17 21 21 C 1.33391 * 122.53882 * 90.02461 * 17 16 15 22 22 H 1.09001 * 109.46522 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47045 * 299.99322 * 1 2 3 24 24 H 1.08998 * 109.47187 * 60.00097 * 1 2 3 25 25 H 1.09006 * 109.46521 * 60.00459 * 3 2 1 26 26 H 1.09002 * 109.47795 * 300.00679 * 3 2 1 27 27 H 1.08999 * 109.47410 * 305.01028 * 4 3 2 28 28 H 1.08997 * 109.47201 * 185.00145 * 4 3 2 29 29 H 0.96996 * 120.00339 * 180.02562 * 9 8 6 30 30 H 1.09000 * 109.47127 * 327.30180 * 14 5 4 31 31 H 1.08998 * 109.46858 * 207.29305 * 14 5 4 32 32 H 1.09004 * 109.46930 * 59.99768 * 15 14 5 33 33 H 1.08994 * 109.47208 * 300.00296 * 15 14 5 34 34 H 1.08996 * 109.47599 * 60.00440 * 16 15 14 35 35 H 1.09003 * 109.47324 * 299.99720 * 16 15 14 36 36 H 1.07998 * 122.53726 * 0.04214 * 18 17 16 37 37 H 1.07993 * 125.20515 * 180.02562 * 19 18 17 38 38 H 1.07997 * 125.20678 * 359.95741 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5642 -1.2510 6 6 4.0978 -0.7973 -1.3347 7 1 3.8130 -1.3100 -2.2416 8 6 4.5867 -1.5184 -0.2540 9 7 4.2908 -2.7945 -0.1263 10 14 5.6645 -0.6775 1.0191 11 1 4.8265 -0.2343 2.1621 12 1 6.6958 -1.6307 1.5018 13 1 6.3281 0.5008 0.4054 14 6 4.2881 1.4001 -2.4131 15 6 5.7514 1.8420 -2.3458 16 6 6.0769 2.7145 -3.5597 17 6 7.5184 3.1492 -3.4939 18 6 7.9164 4.3148 -2.8621 19 6 9.2285 4.5524 -2.8956 20 16 10.0415 3.2525 -3.7575 21 6 8.5073 2.4402 -4.0403 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6886 1.8463 0.8901 26 1 1.6886 1.8465 -0.8899 27 1 3.8508 0.5684 0.8426 28 1 3.9784 2.1766 0.0902 29 1 4.6321 -3.2983 0.6291 30 1 3.6429 2.2786 -2.4121 31 1 4.1228 0.8287 -3.3264 32 1 6.3966 0.9634 -2.3467 33 1 5.9168 2.4132 -1.4324 34 1 5.4318 3.5930 -3.5593 35 1 5.9117 2.1428 -4.4730 36 1 7.2175 4.9812 -2.3785 37 1 9.7175 5.4094 -2.4565 38 1 8.3852 1.5077 -4.5712 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459534266.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:34 Heat of formation + Delta-G solvation = 7.809132 kcal Electronic energy + Delta-G solvation = -18531.521677 eV Core-core repulsion = 15694.764925 eV Total energy + Delta-G solvation = -2836.756752 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.38162 -37.34240 -35.72334 -32.91688 -31.35791 -29.63073 -28.41745 -26.04701 -25.63451 -23.51550 -22.59074 -21.63279 -19.77353 -18.59576 -17.46180 -16.71719 -15.90249 -15.38293 -15.26596 -14.62088 -14.32196 -13.99492 -13.72759 -13.41179 -12.91620 -12.84444 -12.57244 -12.39005 -12.15274 -11.82684 -11.55252 -11.31393 -11.09870 -11.00503 -10.73079 -10.66380 -10.49443 -10.32786 -9.84315 -9.70738 -9.44514 -8.84312 -8.72022 -8.33051 -8.26961 -6.70611 -5.82645 -3.21748 1.08953 1.73887 2.05584 2.81744 3.40966 3.55555 3.60253 4.61794 4.67541 4.93620 5.03860 5.17431 5.41777 5.44626 5.54752 5.68573 5.73380 5.81456 5.90208 5.98098 5.99298 6.02696 6.11500 6.14087 6.15794 6.19652 6.33388 6.42413 6.50168 6.56942 6.60753 6.79643 6.92201 7.09879 8.02209 8.22620 8.54748 9.11696 9.88178 10.26163 11.33758 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022375 B = 0.004808 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.106566 B = 5822.797370 C = 6430.786512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.347 6.347 3 C 0.047 3.953 4 C 0.135 3.865 5 N -0.597 5.597 6 C -0.250 4.250 7 H 0.074 0.926 8 C 0.044 3.956 9 N -0.898 5.898 10 Si 0.867 3.133 11 H -0.288 1.288 12 H -0.304 1.304 13 H -0.268 1.268 14 C 0.151 3.849 15 C -0.133 4.133 16 C -0.060 4.060 17 C -0.092 4.092 18 C -0.126 4.126 19 C -0.217 4.217 20 S 0.069 5.931 21 C -0.209 4.209 22 H 0.078 0.922 23 H 0.025 0.975 24 H 0.029 0.971 25 H 0.027 0.973 26 H 0.036 0.964 27 H 0.061 0.939 28 H 0.052 0.948 29 H 0.259 0.741 30 H 0.034 0.966 31 H 0.053 0.947 32 H 0.066 0.934 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.070 0.930 36 H 0.138 0.862 37 H 0.160 0.840 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.804 14.577 -5.141 15.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.264 6.264 3 C -0.032 4.032 4 C 0.008 3.992 5 N -0.319 5.319 6 C -0.378 4.378 7 H 0.092 0.908 8 C -0.157 4.157 9 N -0.539 5.539 10 Si 0.697 3.303 11 H -0.217 1.217 12 H -0.232 1.232 13 H -0.192 1.192 14 C 0.025 3.975 15 C -0.174 4.174 16 C -0.101 4.101 17 C -0.103 4.103 18 C -0.157 4.157 19 C -0.352 4.352 20 S 0.332 5.668 21 C -0.344 4.344 22 H 0.097 0.903 23 H 0.044 0.956 24 H 0.047 0.953 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.072 0.928 32 H 0.085 0.915 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.156 0.844 37 H 0.178 0.822 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.473 13.922 -5.441 15.917 hybrid contribution -0.980 0.940 1.356 1.919 sum 4.492 14.862 -4.085 16.054 Atomic orbital electron populations 1.22640 0.83900 1.01842 0.98210 1.88312 1.16831 1.26521 1.94772 1.23251 0.97495 0.85029 0.97440 1.21278 0.90218 0.96495 0.91161 1.44046 1.75744 1.03673 1.08413 1.18585 1.37102 0.79785 1.02356 0.90818 1.25356 0.97922 0.94755 0.97618 1.69894 1.44759 1.08630 1.30599 0.87079 0.81639 0.79533 0.82029 1.21654 1.23230 1.19244 1.20930 0.91694 0.93394 0.91475 1.22268 1.00739 0.98742 0.95611 1.20400 0.89703 0.99827 1.00148 1.19127 0.97556 0.94773 0.98891 1.20150 0.95385 0.98265 1.01900 1.25520 0.97672 1.03747 1.08239 1.84138 1.11020 1.17060 1.54573 1.25466 0.94382 1.05225 1.09363 0.90346 0.95643 0.95273 0.95533 0.94580 0.92094 0.92958 0.93100 0.94745 0.92814 0.91524 0.93096 0.91451 0.91127 0.84403 0.82217 0.81852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 11.01 101.05 1.11 1.65 16 2 O -0.35 -7.90 10.18 -35.23 -0.36 -8.26 16 3 C 0.05 0.94 6.28 37.16 0.23 1.17 16 4 C 0.13 2.94 4.96 -4.04 -0.02 2.92 16 5 N -0.60 -14.06 2.04 -173.24 -0.35 -14.42 16 6 C -0.25 -7.02 9.39 -15.06 -0.14 -7.16 16 7 H 0.07 2.26 8.06 -52.49 -0.42 1.84 16 8 C 0.04 1.28 5.28 -17.43 -0.09 1.19 16 9 N -0.90 -28.10 13.97 55.49 0.78 -27.32 16 10 Si 0.87 22.70 25.16 -169.99 -4.28 18.42 16 11 H -0.29 -7.44 6.67 56.52 0.38 -7.07 16 12 H -0.30 -8.14 7.11 56.52 0.40 -7.74 16 13 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 14 C 0.15 2.89 5.67 -4.04 -0.02 2.87 16 15 C -0.13 -2.34 5.52 -26.73 -0.15 -2.49 16 16 C -0.06 -0.83 5.47 -27.89 -0.15 -0.98 16 17 C -0.09 -1.26 5.06 -106.25 -0.54 -1.80 16 18 C -0.13 -1.59 9.98 -41.21 -0.41 -2.00 16 19 C -0.22 -2.50 11.23 29.04 0.33 -2.18 16 20 S 0.07 0.82 23.34 -107.50 -2.51 -1.69 16 21 C -0.21 -2.80 10.98 29.04 0.32 -2.48 16 22 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 24 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 25 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 1.50 3.45 -51.93 -0.18 1.33 16 28 H 0.05 0.99 8.07 -51.93 -0.42 0.57 16 29 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 30 H 0.03 0.58 8.09 -51.93 -0.42 0.16 16 31 H 0.05 1.04 8.02 -51.93 -0.42 0.62 16 32 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.07 0.83 8.13 -51.93 -0.42 0.40 16 35 H 0.07 0.93 8.12 -51.93 -0.42 0.51 16 36 H 0.14 1.52 8.06 -52.49 -0.42 1.09 16 37 H 0.16 1.43 8.06 -52.49 -0.42 1.01 16 38 H 0.16 2.01 8.06 -52.49 -0.42 1.59 16 LS Contribution 327.79 15.07 4.94 4.94 Total: -1.00 -32.31 327.79 -7.41 -39.72 By element: Atomic # 1 Polarization: 3.98 SS G_CDS: -6.09 Total: -2.11 kcal Atomic # 6 Polarization: -9.76 SS G_CDS: 0.47 Total: -9.29 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.42 Total: -41.74 kcal Atomic # 8 Polarization: -7.90 SS G_CDS: -0.36 Total: -8.26 kcal Atomic # 14 Polarization: 22.70 SS G_CDS: -4.28 Total: 18.42 kcal Atomic # 16 Polarization: 0.82 SS G_CDS: -2.51 Total: -1.69 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.31 -7.41 -39.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459534266.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.526 kcal (2) G-P(sol) polarization free energy of solvation -32.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds