Wall clock time and date at job start Mon Mar 30 2020 00:58:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42898 * 114.00059 * 2 1 4 4 C 1.52997 * 109.47471 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.46839 * 65.00769 * 4 3 2 6 6 C 1.36941 * 119.99692 * 270.00286 * 5 4 3 7 7 H 1.07998 * 120.00097 * 141.76160 * 6 5 4 8 8 C 1.38811 * 120.00052 * 321.75249 * 6 5 4 9 9 N 1.31620 * 120.00294 * 156.56238 * 8 6 5 10 10 Si 1.86807 * 120.00060 * 336.56639 * 8 6 5 11 11 H 1.48499 * 109.47092 * 95.53574 * 10 8 6 12 12 H 1.48494 * 109.47110 * 215.53427 * 10 8 6 13 13 H 1.48501 * 109.46917 * 335.53359 * 10 8 6 14 14 C 1.46498 * 120.00123 * 89.99550 * 5 4 3 15 15 C 1.53002 * 109.46753 * 87.29833 * 14 5 4 16 16 C 1.52995 * 109.46949 * 179.97438 * 15 14 5 17 17 C 1.50701 * 109.47098 * 180.02562 * 16 15 14 18 18 C 1.38422 * 122.53944 * 270.00285 * 17 16 15 19 19 C 1.33392 * 114.92235 * 180.02562 * 18 17 16 20 20 S 1.75884 * 109.59203 * 359.75580 * 19 18 17 21 21 C 1.33391 * 122.53882 * 90.02461 * 17 16 15 22 22 H 1.09001 * 109.46522 * 179.97438 * 1 2 3 23 23 H 1.08992 * 109.47045 * 299.99322 * 1 2 3 24 24 H 1.08998 * 109.47187 * 60.00097 * 1 2 3 25 25 H 1.09006 * 109.46521 * 60.00459 * 3 2 1 26 26 H 1.09002 * 109.47795 * 300.00679 * 3 2 1 27 27 H 1.08999 * 109.47410 * 305.01028 * 4 3 2 28 28 H 1.08997 * 109.47201 * 185.00145 * 4 3 2 29 29 H 0.96996 * 120.00339 * 180.02562 * 9 8 6 30 30 H 1.09000 * 109.47127 * 327.30180 * 14 5 4 31 31 H 1.08998 * 109.46858 * 207.29305 * 14 5 4 32 32 H 1.09004 * 109.46930 * 59.99768 * 15 14 5 33 33 H 1.08994 * 109.47208 * 300.00296 * 15 14 5 34 34 H 1.08996 * 109.47599 * 60.00440 * 16 15 14 35 35 H 1.09003 * 109.47324 * 299.99720 * 16 15 14 36 36 H 1.07998 * 122.53726 * 0.04214 * 18 17 16 37 37 H 1.07993 * 125.20515 * 180.02562 * 19 18 17 38 38 H 1.07997 * 125.20678 * 359.95741 * 21 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9767 0.5642 -1.2510 6 6 4.0978 -0.7973 -1.3347 7 1 3.8130 -1.3100 -2.2416 8 6 4.5867 -1.5184 -0.2540 9 7 4.2908 -2.7945 -0.1263 10 14 5.6645 -0.6775 1.0191 11 1 4.8265 -0.2343 2.1621 12 1 6.6958 -1.6307 1.5018 13 1 6.3281 0.5008 0.4054 14 6 4.2881 1.4001 -2.4131 15 6 5.7514 1.8420 -2.3458 16 6 6.0769 2.7145 -3.5597 17 6 7.5184 3.1492 -3.4939 18 6 7.9164 4.3148 -2.8621 19 6 9.2285 4.5524 -2.8956 20 16 10.0415 3.2525 -3.7575 21 6 8.5073 2.4402 -4.0403 22 1 -0.3632 -1.0277 -0.0005 23 1 -0.3633 0.5137 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 1.6886 1.8463 0.8901 26 1 1.6886 1.8465 -0.8899 27 1 3.8508 0.5684 0.8426 28 1 3.9784 2.1766 0.0902 29 1 4.6321 -3.2983 0.6291 30 1 3.6429 2.2786 -2.4121 31 1 4.1228 0.8287 -3.3264 32 1 6.3966 0.9634 -2.3467 33 1 5.9168 2.4132 -1.4324 34 1 5.4318 3.5930 -3.5593 35 1 5.9117 2.1428 -4.4730 36 1 7.2175 4.9812 -2.3785 37 1 9.7175 5.4094 -2.4565 38 1 8.3852 1.5077 -4.5712 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459534266.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:34 Heat of formation + Delta-G solvation = -12.095636 kcal Electronic energy + Delta-G solvation = -18532.384813 eV Core-core repulsion = 15694.764925 eV Total energy + Delta-G solvation = -2837.619888 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.45573 -38.89787 -37.38065 -34.45681 -33.30426 -30.90733 -29.85020 -27.53786 -27.11138 -25.06131 -24.04271 -22.95734 -21.44459 -19.57077 -18.74214 -18.41068 -17.56970 -17.06442 -16.46644 -16.17203 -15.85845 -15.53173 -15.28587 -14.82274 -14.44834 -14.20403 -13.88119 -13.67697 -13.55823 -13.24519 -12.96827 -12.79480 -12.63188 -12.41248 -12.30600 -12.20450 -12.02831 -11.69490 -11.59968 -11.36522 -11.29486 -10.53292 -10.32902 -9.67063 -9.24835 -8.63831 -8.07799 -5.41805 0.14210 0.81557 1.11887 1.31613 1.41803 1.52205 1.83929 2.50504 3.14256 3.16201 3.51588 4.04487 4.13816 4.27336 4.35087 4.42103 4.51655 4.56965 4.59229 4.63447 4.65549 4.71029 4.72495 4.80683 4.88862 4.92202 4.95003 5.05850 5.15894 5.21866 5.34002 5.55927 5.64579 5.70220 6.06037 6.28431 6.61457 7.12283 7.76860 8.17171 9.13253 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022375 B = 0.004808 C = 0.004353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1251.106566 B = 5822.797370 C = 6430.786512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.401 6.401 3 C 0.048 3.952 4 C 0.125 3.875 5 N -0.610 5.610 6 C -0.226 4.226 7 H 0.032 0.968 8 C -0.015 4.015 9 N -0.950 5.950 10 Si 0.931 3.069 11 H -0.282 1.282 12 H -0.317 1.317 13 H -0.253 1.253 14 C 0.149 3.851 15 C -0.120 4.120 16 C -0.050 4.050 17 C -0.105 4.105 18 C -0.142 4.142 19 C -0.212 4.212 20 S 0.079 5.921 21 C -0.232 4.232 22 H 0.074 0.926 23 H 0.051 0.949 24 H 0.045 0.955 25 H 0.057 0.943 26 H 0.053 0.947 27 H 0.032 0.968 28 H 0.088 0.912 29 H 0.256 0.744 30 H 0.069 0.931 31 H 0.043 0.957 32 H 0.030 0.970 33 H 0.049 0.951 34 H 0.091 0.909 35 H 0.073 0.927 36 H 0.156 0.844 37 H 0.187 0.813 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.881 18.065 -4.842 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.320 6.320 3 C -0.030 4.030 4 C 0.000 4.000 5 N -0.332 5.332 6 C -0.356 4.356 7 H 0.050 0.950 8 C -0.210 4.210 9 N -0.595 5.595 10 Si 0.761 3.239 11 H -0.209 1.209 12 H -0.246 1.246 13 H -0.177 1.177 14 C 0.024 3.976 15 C -0.160 4.160 16 C -0.091 4.091 17 C -0.117 4.117 18 C -0.172 4.172 19 C -0.347 4.347 20 S 0.342 5.658 21 C -0.367 4.367 22 H 0.093 0.907 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.050 0.950 28 H 0.106 0.894 29 H 0.065 0.935 30 H 0.087 0.913 31 H 0.062 0.938 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.110 0.890 35 H 0.091 0.909 36 H 0.174 0.826 37 H 0.205 0.795 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 5.545 17.474 -5.156 19.044 hybrid contribution -1.064 -0.097 1.158 1.576 sum 4.481 17.377 -3.997 18.385 Atomic orbital electron populations 1.22790 0.81377 1.02407 1.00218 1.88228 1.19859 1.28663 1.95235 1.23236 0.95721 0.84396 0.99691 1.21429 0.92220 0.97350 0.88974 1.44157 1.76417 1.02375 1.10253 1.18395 1.34716 0.82142 1.00361 0.95023 1.25907 0.99666 0.95244 1.00216 1.70030 1.47083 1.10483 1.31936 0.86031 0.79458 0.78457 0.79921 1.20920 1.24612 1.17708 1.21066 0.93419 0.93745 0.89321 1.22024 0.98608 0.97931 0.97433 1.20276 0.90555 0.99984 0.98260 1.19260 0.97364 0.95558 0.99539 1.20355 0.96225 0.98259 1.02365 1.25909 0.97489 1.04027 1.07240 1.84105 1.10171 1.17113 1.54408 1.25678 0.95473 1.05656 1.09888 0.90704 0.93071 0.93611 0.92451 0.92857 0.95042 0.89354 0.93541 0.91266 0.93825 0.95071 0.93240 0.89037 0.90875 0.82638 0.79532 0.81875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.93 11.01 113.37 1.25 2.18 16 2 O -0.40 -17.84 10.18 -148.98 -1.52 -19.36 16 3 C 0.05 1.76 6.28 71.98 0.45 2.21 16 4 C 0.13 5.18 4.96 86.38 0.43 5.61 16 5 N -0.61 -28.10 2.04 -702.00 -1.43 -29.53 16 6 C -0.23 -13.00 9.39 84.03 0.79 -12.21 16 7 H 0.03 2.06 8.06 -2.91 -0.02 2.04 16 8 C -0.01 -0.89 5.28 84.86 0.45 -0.44 16 9 N -0.95 -61.90 13.97 21.65 0.30 -61.60 16 10 Si 0.93 47.95 25.16 68.60 1.73 49.68 16 11 H -0.28 -14.02 6.67 99.48 0.66 -13.36 16 12 H -0.32 -16.77 7.11 99.48 0.71 -16.06 16 13 H -0.25 -12.22 7.11 99.48 0.71 -11.51 16 14 C 0.15 5.43 5.67 86.38 0.49 5.92 16 15 C -0.12 -4.00 5.52 30.59 0.17 -3.83 16 16 C -0.05 -1.27 5.47 29.85 0.16 -1.11 16 17 C -0.10 -2.68 5.06 -20.92 -0.11 -2.79 16 18 C -0.14 -3.15 9.98 21.22 0.21 -2.94 16 19 C -0.21 -4.25 11.23 66.72 0.75 -3.50 16 20 S 0.08 1.73 23.34 -56.49 -1.32 0.41 16 21 C -0.23 -5.96 10.98 66.72 0.73 -5.23 16 22 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 23 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 24 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.06 1.74 8.14 -2.38 -0.02 1.72 16 26 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 27 H 0.03 1.50 3.45 -2.39 -0.01 1.49 16 28 H 0.09 2.97 8.07 -2.39 -0.02 2.95 16 29 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 30 H 0.07 2.06 8.09 -2.39 -0.02 2.04 16 31 H 0.04 1.66 8.02 -2.39 -0.02 1.64 16 32 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 34 H 0.09 1.89 8.13 -2.39 -0.02 1.87 16 35 H 0.07 1.80 8.12 -2.39 -0.02 1.78 16 36 H 0.16 2.82 8.06 -2.91 -0.02 2.80 16 37 H 0.19 2.62 8.06 -2.91 -0.02 2.60 16 38 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -72.22 327.79 4.51 -67.71 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: 0.97 Total: 8.81 kcal Atomic # 6 Polarization: -21.91 SS G_CDS: 5.77 Total: -16.13 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -1.13 Total: -91.13 kcal Atomic # 8 Polarization: -17.84 SS G_CDS: -1.52 Total: -19.36 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 1.73 Total: 49.68 kcal Atomic # 16 Polarization: 1.73 SS G_CDS: -1.32 Total: 0.41 kcal Total: -72.22 4.51 -67.71 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459534266.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.618 kcal (2) G-P(sol) polarization free energy of solvation -72.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds