Wall clock time and date at job start Mon Mar 30 2020 01:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46970 * 0.42164 * 3 2 1 5 5 C 1.52998 * 109.46919 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47299 * 55.00227 * 5 4 3 7 7 C 1.47200 * 109.47472 * 294.99928 * 5 4 3 8 8 N 4.93203 * 152.66412 * 80.16371 * 2 1 3 9 9 C 1.53004 * 109.47212 * 175.00232 * 5 4 3 10 10 N 1.46498 * 109.47302 * 185.00105 * 9 5 4 11 11 C 1.39683 * 120.00081 * 179.97438 * 10 9 5 12 12 C 1.39341 * 119.94949 * 359.73172 * 11 10 9 13 13 C 1.38481 * 120.42116 * 179.71816 * 12 11 10 14 14 C 1.37694 * 120.32157 * 0.55304 * 13 12 11 15 15 C 1.40742 * 119.89759 * 359.72337 * 14 13 12 16 16 C 1.41407 * 120.21118 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99702 * 24.41208 * 16 15 14 18 18 C 1.39925 * 120.00458 * 204.40914 * 16 15 14 19 19 N 1.30829 * 119.99848 * 17.88789 * 18 16 15 20 20 Si 1.86799 * 120.00548 * 197.88821 * 18 16 15 21 21 H 1.48510 * 109.46883 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47327 * 119.99733 * 20 18 16 23 23 H 1.48502 * 109.47321 * 240.00563 * 20 18 16 24 24 C 1.38274 * 119.95312 * 180.02562 * 11 10 9 25 25 H 1.08998 * 109.47070 * 240.41998 * 3 2 1 26 26 H 1.09004 * 109.46669 * 120.41907 * 3 2 1 27 27 H 1.09011 * 109.47157 * 60.00179 * 4 3 2 28 28 H 1.08995 * 109.47421 * 299.99990 * 4 3 2 29 29 H 1.09006 * 109.47016 * 305.00091 * 9 5 4 30 30 H 1.08997 * 109.47143 * 64.99710 * 9 5 4 31 31 H 0.96996 * 119.99995 * 0.02562 * 10 9 5 32 32 H 1.07995 * 119.78692 * 359.97438 * 12 11 10 33 33 H 1.07991 * 119.83990 * 180.28005 * 13 12 11 34 34 H 1.08003 * 120.04798 * 179.74877 * 14 13 12 35 35 H 0.97004 * 120.00279 * 179.97438 * 19 18 16 36 36 H 1.07997 * 120.15937 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.4415 -0.0106 5 6 4.6486 -1.4408 -0.0113 6 1 5.0121 -0.8574 0.8346 7 6 5.1386 -0.8451 -1.2650 8 7 5.5173 -0.3869 -2.2315 9 6 5.1594 -2.8785 0.1038 10 7 6.6195 -2.8700 0.2234 11 6 7.3175 -4.0740 0.3425 12 6 6.6236 -5.2823 0.3532 13 6 7.3062 -6.4820 0.4650 14 6 8.6785 -6.4930 0.5783 15 6 9.3924 -5.2802 0.5748 16 6 10.8018 -5.2838 0.6903 17 1 11.3657 -6.1555 0.3925 18 6 11.4658 -4.1582 1.1903 19 7 10.8040 -3.2554 1.8675 20 14 13.2972 -3.9443 0.8909 21 1 13.8078 -5.0955 0.1037 22 1 13.5320 -2.6867 0.1369 23 1 14.0077 -3.8807 2.1933 24 6 8.6956 -4.0648 0.4558 25 1 2.9712 0.5081 0.8937 26 1 2.9711 0.5212 -0.8863 27 1 2.7555 -1.9490 -0.9045 28 1 2.7556 -1.9621 0.8755 29 1 4.7253 -3.3488 0.9863 30 1 4.8709 -3.4389 -0.7854 31 1 7.1014 -2.0282 0.2205 32 1 5.5469 -5.2834 0.2696 33 1 6.7594 -7.4132 0.4677 34 1 9.2060 -7.4310 0.6693 35 1 11.2643 -2.4752 2.2144 36 1 9.2340 -3.1286 0.4520 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566615988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:11 Heat of formation + Delta-G solvation = 60.087080 kcal Electronic energy + Delta-G solvation = -18587.146868 eV Core-core repulsion = 15649.505857 eV Total energy + Delta-G solvation = -2937.641011 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -38.74615 -37.59650 -36.81156 -35.30392 -34.20916 -33.18386 -30.47298 -29.45808 -27.43366 -25.26956 -23.98422 -23.20383 -20.96517 -19.93888 -18.12848 -17.79938 -17.26546 -15.96673 -15.62655 -15.19752 -14.81564 -14.65790 -14.11908 -13.97810 -13.83843 -13.34620 -13.15841 -12.90267 -12.74711 -12.70397 -12.34756 -12.18980 -12.13669 -11.67113 -11.56525 -11.33457 -11.28741 -11.09151 -10.99864 -10.61316 -10.41326 -9.65956 -9.48169 -9.29160 -8.82899 -7.33634 -6.75608 -6.24673 -4.32924 2.37904 2.45537 2.67338 2.69128 2.84052 3.09749 3.15161 3.19855 3.30846 3.52129 3.67748 3.96784 4.09856 4.39387 4.58802 4.69977 4.77167 4.94647 4.96897 5.08552 5.41020 5.57239 5.71423 5.82242 5.89922 6.23829 6.53184 6.84293 7.05057 7.11897 7.22026 7.33382 7.37970 7.46899 7.74798 7.92148 8.06064 8.14988 8.45661 8.59010 8.79855 8.99202 9.08077 10.23312 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025350 B = 0.003609 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.289556 B = 7756.255751 C = 8446.965607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C 0.208 3.792 3 C -0.031 4.031 4 C -0.106 4.106 5 C -0.002 4.002 6 H 0.125 0.875 7 C 0.206 3.794 8 N -0.425 5.425 9 C 0.144 3.856 10 N -0.764 5.764 11 C 0.214 3.786 12 C -0.298 4.298 13 C -0.066 4.066 14 C -0.256 4.256 15 C 0.138 3.862 16 C -0.463 4.463 17 H 0.076 0.924 18 C 0.078 3.922 19 N -0.792 5.792 20 Si 0.903 3.097 21 H -0.261 1.261 22 H -0.273 1.273 23 H -0.275 1.275 24 C -0.229 4.229 25 H 0.118 0.882 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.100 0.900 29 H 0.074 0.926 30 H 0.059 0.941 31 H 0.390 0.610 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.277 0.723 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.102 5.969 0.264 11.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.114 5.114 2 C -0.109 4.109 3 C -0.071 4.071 4 C -0.147 4.147 5 C -0.024 4.024 6 H 0.143 0.857 7 C -0.112 4.112 8 N -0.100 5.100 9 C 0.017 3.983 10 N -0.399 5.399 11 C 0.116 3.884 12 C -0.321 4.321 13 C -0.085 4.085 14 C -0.276 4.276 15 C 0.135 3.865 16 C -0.493 4.493 17 H 0.095 0.905 18 C -0.139 4.139 19 N -0.417 5.417 20 Si 0.728 3.272 21 H -0.185 1.185 22 H -0.198 1.198 23 H -0.201 1.201 24 C -0.252 4.252 25 H 0.136 0.864 26 H 0.124 0.876 27 H 0.104 0.896 28 H 0.119 0.881 29 H 0.092 0.908 30 H 0.077 0.923 31 H 0.223 0.777 32 H 0.105 0.895 33 H 0.104 0.896 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -11.383 6.804 -1.079 13.305 hybrid contribution 1.377 0.324 0.324 1.451 sum -10.006 7.127 -0.755 12.308 Atomic orbital electron populations 1.81260 1.13085 1.08166 1.08858 1.29093 0.95172 0.93463 0.93214 1.19393 0.81862 0.99576 1.06304 1.21526 0.92085 0.95297 1.05765 1.19223 0.95372 0.97936 0.89840 0.85684 1.28941 0.93857 0.93624 0.94786 1.81193 1.07901 1.09451 1.11493 1.21074 0.83520 0.91654 1.02024 1.44356 1.03503 1.06490 1.85526 1.17573 0.91369 0.84353 0.95104 1.19864 0.96785 0.91575 1.23895 1.20291 0.94272 0.95412 0.98559 1.20882 0.93243 0.97104 1.16394 1.17330 0.92886 0.90353 0.85971 1.19591 0.91954 0.99988 1.37780 0.90543 1.25867 1.00544 0.95004 0.92529 1.69863 1.38122 1.09239 1.24501 0.86354 0.82647 0.79298 0.78948 1.18459 1.19844 1.20090 1.20725 0.90247 0.99317 1.14954 0.86441 0.87573 0.89633 0.88116 0.90824 0.92292 0.77652 0.89515 0.89592 0.89391 0.91244 0.86538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.44 -4.89 18.54 42.15 0.78 -4.10 16 2 C 0.21 1.58 15.43 -20.76 -0.32 1.26 16 3 C -0.03 -0.12 5.51 -29.52 -0.16 -0.28 16 4 C -0.11 -0.46 4.61 -26.73 -0.12 -0.58 16 5 C 0.00 -0.01 2.31 -93.41 -0.22 -0.23 16 6 H 0.13 0.59 8.14 -51.93 -0.42 0.17 16 7 C 0.21 2.14 13.10 -20.80 -0.27 1.87 16 8 N -0.43 -5.84 18.53 42.10 0.78 -5.06 16 9 C 0.14 1.57 4.27 -4.04 -0.02 1.55 16 10 N -0.76 -12.30 5.52 -58.68 -0.32 -12.63 16 11 C 0.21 4.58 6.64 -83.86 -0.56 4.02 16 12 C -0.30 -6.23 9.32 -39.08 -0.36 -6.60 16 13 C -0.07 -1.46 10.02 -39.69 -0.40 -1.86 16 14 C -0.26 -6.25 9.79 -38.83 -0.38 -6.63 16 15 C 0.14 3.63 5.57 -106.85 -0.60 3.04 16 16 C -0.46 -12.24 9.05 -37.75 -0.34 -12.58 16 17 H 0.08 1.96 7.91 -52.48 -0.42 1.55 16 18 C 0.08 1.94 5.14 -17.35 -0.09 1.85 16 19 N -0.79 -19.99 10.95 55.55 0.61 -19.38 16 20 Si 0.90 18.58 29.59 -169.99 -5.03 13.55 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 23 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 24 C -0.23 -5.70 8.53 -38.68 -0.33 -6.03 16 25 H 0.12 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.11 0.41 7.38 -51.93 -0.38 0.03 16 27 H 0.08 0.41 8.14 -51.92 -0.42 -0.02 16 28 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.73 7.93 -51.93 -0.41 0.32 16 30 H 0.06 0.69 7.95 -51.93 -0.41 0.27 16 31 H 0.39 6.08 8.22 -40.82 -0.34 5.74 16 32 H 0.09 1.56 6.70 -52.49 -0.35 1.20 16 33 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 34 H 0.09 2.05 8.06 -52.48 -0.42 1.62 16 35 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 36 H 0.12 3.02 6.15 -52.49 -0.32 2.70 16 LS Contribution 322.99 15.07 4.87 4.87 Total: -1.00 -32.01 322.99 -6.79 -38.80 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -4.30 Total: 5.17 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -4.17 Total: -21.21 kcal Atomic # 7 Polarization: -43.02 SS G_CDS: 1.85 Total: -41.17 kcal Atomic # 14 Polarization: 18.58 SS G_CDS: -5.03 Total: 13.55 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -32.01 -6.79 -38.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566615988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.884 kcal (2) G-P(sol) polarization free energy of solvation -32.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds