Wall clock time and date at job start Mon Mar 30 2020 01:11:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13599 * 1 3 3 C 1.47208 * 179.97438 * 2 1 4 4 C 1.52995 * 109.46970 * 0.42164 * 3 2 1 5 5 C 1.52998 * 109.46919 * 179.97438 * 4 3 2 6 6 H 1.09000 * 109.47299 * 55.00227 * 5 4 3 7 7 C 1.47200 * 109.47472 * 294.99928 * 5 4 3 8 8 N 4.93203 * 152.66412 * 80.16371 * 2 1 3 9 9 C 1.53004 * 109.47212 * 175.00232 * 5 4 3 10 10 N 1.46498 * 109.47302 * 185.00105 * 9 5 4 11 11 C 1.39683 * 120.00081 * 179.97438 * 10 9 5 12 12 C 1.39341 * 119.94949 * 359.73172 * 11 10 9 13 13 C 1.38481 * 120.42116 * 179.71816 * 12 11 10 14 14 C 1.37694 * 120.32157 * 0.55304 * 13 12 11 15 15 C 1.40742 * 119.89759 * 359.72337 * 14 13 12 16 16 C 1.41407 * 120.21118 * 180.02562 * 15 14 13 17 17 H 1.08004 * 119.99702 * 24.41208 * 16 15 14 18 18 C 1.39925 * 120.00458 * 204.40914 * 16 15 14 19 19 N 1.30829 * 119.99848 * 17.88789 * 18 16 15 20 20 Si 1.86799 * 120.00548 * 197.88821 * 18 16 15 21 21 H 1.48510 * 109.46883 * 0.02562 * 20 18 16 22 22 H 1.48496 * 109.47327 * 119.99733 * 20 18 16 23 23 H 1.48502 * 109.47321 * 240.00563 * 20 18 16 24 24 C 1.38274 * 119.95312 * 180.02562 * 11 10 9 25 25 H 1.08998 * 109.47070 * 240.41998 * 3 2 1 26 26 H 1.09004 * 109.46669 * 120.41907 * 3 2 1 27 27 H 1.09011 * 109.47157 * 60.00179 * 4 3 2 28 28 H 1.08995 * 109.47421 * 299.99990 * 4 3 2 29 29 H 1.09006 * 109.47016 * 305.00091 * 9 5 4 30 30 H 1.08997 * 109.47143 * 64.99710 * 9 5 4 31 31 H 0.96996 * 119.99995 * 0.02562 * 10 9 5 32 32 H 1.07995 * 119.78692 * 359.97438 * 12 11 10 33 33 H 1.07991 * 119.83990 * 180.28005 * 13 12 11 34 34 H 1.08003 * 120.04798 * 179.74877 * 14 13 12 35 35 H 0.97004 * 120.00279 * 179.97438 * 19 18 16 36 36 H 1.07997 * 120.15937 * 359.97438 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1187 -1.4415 -0.0106 5 6 4.6486 -1.4408 -0.0113 6 1 5.0121 -0.8574 0.8346 7 6 5.1386 -0.8451 -1.2650 8 7 5.5173 -0.3869 -2.2315 9 6 5.1594 -2.8785 0.1038 10 7 6.6195 -2.8700 0.2234 11 6 7.3175 -4.0740 0.3425 12 6 6.6236 -5.2823 0.3532 13 6 7.3062 -6.4820 0.4650 14 6 8.6785 -6.4930 0.5783 15 6 9.3924 -5.2802 0.5748 16 6 10.8018 -5.2838 0.6903 17 1 11.3657 -6.1555 0.3925 18 6 11.4658 -4.1582 1.1903 19 7 10.8040 -3.2554 1.8675 20 14 13.2972 -3.9443 0.8909 21 1 13.8078 -5.0955 0.1037 22 1 13.5320 -2.6867 0.1369 23 1 14.0077 -3.8807 2.1933 24 6 8.6956 -4.0648 0.4558 25 1 2.9712 0.5081 0.8937 26 1 2.9711 0.5212 -0.8863 27 1 2.7555 -1.9490 -0.9045 28 1 2.7556 -1.9621 0.8755 29 1 4.7253 -3.3488 0.9863 30 1 4.8709 -3.4389 -0.7854 31 1 7.1014 -2.0282 0.2205 32 1 5.5469 -5.2834 0.2696 33 1 6.7594 -7.4132 0.4677 34 1 9.2060 -7.4310 0.6693 35 1 11.2643 -2.4752 2.2144 36 1 9.2340 -3.1286 0.4520 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000566615988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:11 Heat of formation + Delta-G solvation = 40.988424 kcal Electronic energy + Delta-G solvation = -18587.975048 eV Core-core repulsion = 15649.505857 eV Total energy + Delta-G solvation = -2938.469190 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.83316 -38.86093 -37.58324 -36.49053 -35.44078 -34.61981 -31.45078 -31.25939 -28.75242 -27.07962 -24.97137 -23.84867 -22.66192 -21.60621 -19.03510 -18.72637 -18.45881 -17.43420 -16.60856 -16.41679 -16.22740 -15.81425 -15.20906 -15.02376 -14.70472 -14.41633 -14.32016 -14.21708 -13.91294 -13.86317 -13.60643 -13.34816 -13.01543 -12.85869 -12.73108 -12.62110 -12.42521 -12.26821 -12.08451 -11.88902 -11.66213 -11.44039 -11.23531 -11.02752 -10.41774 -9.17614 -8.58309 -7.82631 -6.26617 1.12749 1.39885 1.40602 1.53592 1.60910 1.77842 1.84981 1.91515 1.93145 2.25243 2.80002 2.86553 2.99765 3.17185 3.81304 3.93582 4.20614 4.24856 4.40563 4.49605 4.60353 4.78745 4.86142 4.93643 4.99730 5.06220 5.18744 5.25308 5.32703 5.38386 5.51784 5.66360 6.02486 6.18555 6.27805 6.32090 6.63626 6.67530 6.69009 6.99744 7.11590 7.13668 7.30553 8.41908 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025350 B = 0.003609 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.289556 B = 7756.255751 C = 8446.965607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.507 5.507 2 C 0.239 3.761 3 C -0.027 4.027 4 C -0.099 4.099 5 C 0.013 3.987 6 H 0.159 0.841 7 C 0.230 3.770 8 N -0.489 5.489 9 C 0.134 3.866 10 N -0.758 5.758 11 C 0.223 3.777 12 C -0.294 4.294 13 C -0.065 4.065 14 C -0.288 4.288 15 C 0.105 3.895 16 C -0.506 4.506 17 H 0.066 0.934 18 C 0.039 3.961 19 N -0.818 5.818 20 Si 0.973 3.027 21 H -0.263 1.263 22 H -0.266 1.266 23 H -0.265 1.265 24 C -0.260 4.260 25 H 0.154 0.846 26 H 0.109 0.891 27 H 0.082 0.918 28 H 0.125 0.875 29 H 0.098 0.902 30 H 0.057 0.943 31 H 0.392 0.608 32 H 0.126 0.874 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.284 0.716 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.386 6.650 1.045 13.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.185 5.185 2 C -0.077 4.077 3 C -0.067 4.067 4 C -0.140 4.140 5 C -0.009 4.009 6 H 0.176 0.824 7 C -0.087 4.087 8 N -0.165 5.165 9 C 0.009 3.991 10 N -0.391 5.391 11 C 0.122 3.878 12 C -0.317 4.317 13 C -0.084 4.084 14 C -0.309 4.309 15 C 0.102 3.898 16 C -0.536 4.536 17 H 0.084 0.916 18 C -0.176 4.176 19 N -0.444 5.444 20 Si 0.795 3.205 21 H -0.187 1.187 22 H -0.191 1.191 23 H -0.190 1.190 24 C -0.284 4.284 25 H 0.171 0.829 26 H 0.127 0.873 27 H 0.100 0.900 28 H 0.144 0.856 29 H 0.116 0.884 30 H 0.075 0.925 31 H 0.225 0.775 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.712 7.507 -0.301 14.766 hybrid contribution 1.625 0.100 0.076 1.630 sum -11.086 7.607 -0.225 13.447 Atomic orbital electron populations 1.81299 1.15361 1.10480 1.11387 1.29680 0.95633 0.91367 0.91033 1.19623 0.79219 0.99687 1.08166 1.21509 0.89692 0.95799 1.06964 1.19377 0.96869 0.95597 0.89043 0.82377 1.29615 0.92177 0.92210 0.94680 1.81231 1.10075 1.11558 1.13649 1.21408 0.80153 0.94521 1.02970 1.44507 1.05776 1.04804 1.84016 1.17663 0.90562 0.86691 0.92931 1.20291 0.98683 0.90721 1.21989 1.20682 0.93406 0.97437 0.96861 1.21021 0.94751 0.96479 1.18665 1.17713 0.93476 0.91749 0.86845 1.19793 0.92758 1.00914 1.40130 0.91554 1.26604 1.04897 0.94293 0.91779 1.69901 1.39908 1.09736 1.24881 0.85298 0.77063 0.79081 0.79074 1.18726 1.19100 1.18952 1.20663 0.92062 0.98082 1.17577 0.82872 0.87331 0.89963 0.85638 0.88427 0.92510 0.77492 0.85630 0.86442 0.89788 0.90500 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -10.75 18.54 20.01 0.37 -10.38 16 2 C 0.24 3.00 15.43 89.44 1.38 4.38 16 3 C -0.03 -0.09 5.51 28.79 0.16 0.07 16 4 C -0.10 -0.38 4.61 30.59 0.14 -0.24 16 5 C 0.01 0.12 2.31 -12.60 -0.03 0.09 16 6 H 0.16 0.57 8.14 -2.39 -0.02 0.55 16 7 C 0.23 4.18 13.10 89.46 1.17 5.36 16 8 N -0.49 -12.87 18.53 19.99 0.37 -12.50 16 9 C 0.13 2.34 4.27 86.38 0.37 2.71 16 10 N -0.76 -22.50 5.52 -339.57 -1.87 -24.37 16 11 C 0.22 9.23 6.64 38.16 0.25 9.49 16 12 C -0.29 -11.48 9.32 22.59 0.21 -11.27 16 13 C -0.07 -2.77 10.02 22.20 0.22 -2.54 16 14 C -0.29 -14.41 9.79 22.75 0.22 -14.19 16 15 C 0.11 5.75 5.57 -21.31 -0.12 5.63 16 16 C -0.51 -28.03 9.05 23.46 0.21 -27.82 16 17 H 0.07 3.62 7.91 -2.91 -0.02 3.60 16 18 C 0.04 2.00 5.14 85.25 0.44 2.44 16 19 N -0.82 -42.31 10.95 21.82 0.24 -42.08 16 20 Si 0.97 38.93 29.59 68.60 2.03 40.96 16 21 H -0.26 -10.50 7.11 99.48 0.71 -9.80 16 22 H -0.27 -10.24 7.11 99.48 0.71 -9.54 16 23 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 24 C -0.26 -13.22 8.53 22.86 0.20 -13.03 16 25 H 0.15 -0.45 8.14 -2.39 -0.02 -0.47 16 26 H 0.11 0.45 7.38 -2.39 -0.02 0.43 16 27 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 28 H 0.13 0.01 8.14 -2.39 -0.02 -0.01 16 29 H 0.10 1.38 7.93 -2.38 -0.02 1.36 16 30 H 0.06 1.08 7.95 -2.39 -0.02 1.06 16 31 H 0.39 11.46 8.22 -92.71 -0.76 10.70 16 32 H 0.13 3.88 6.70 -2.91 -0.02 3.86 16 33 H 0.12 4.15 8.06 -2.92 -0.02 4.12 16 34 H 0.08 4.08 8.06 -2.91 -0.02 4.06 16 35 H 0.28 13.23 8.30 -92.71 -0.77 12.46 16 36 H 0.10 5.23 6.15 -2.91 -0.02 5.21 16 Total: -1.00 -74.92 322.99 6.31 -68.60 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: 0.35 Total: 18.69 kcal Atomic # 6 Polarization: -43.76 SS G_CDS: 4.83 Total: -38.93 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -0.89 Total: -89.32 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.96 kcal Total: -74.92 6.31 -68.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566615988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.590 kcal (2) G-P(sol) polarization free energy of solvation -74.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds