Wall clock time and date at job start Mon Mar 30 2020 00:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99384 * 2 1 4 4 C 1.53003 * 109.46910 * 184.84318 * 3 2 1 5 5 N 1.46502 * 109.47071 * 61.09045 * 4 3 2 6 6 C 1.36942 * 120.00045 * 265.09305 * 5 4 3 7 7 H 1.08002 * 119.99937 * 172.35209 * 6 5 4 8 8 C 1.38812 * 119.99673 * 352.34563 * 6 5 4 9 9 N 1.31615 * 120.00458 * 35.91452 * 8 6 5 10 10 Si 1.86802 * 119.99591 * 215.91362 * 8 6 5 11 11 H 1.48500 * 109.47604 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47174 * 120.00475 * 10 8 6 13 13 H 1.48500 * 109.47096 * 240.00073 * 10 8 6 14 14 C 1.46502 * 119.99922 * 85.09264 * 5 4 3 15 15 H 1.08995 * 109.46959 * 357.58809 * 14 5 4 16 16 C 1.53004 * 109.47046 * 237.58640 * 14 5 4 17 17 C 1.53000 * 109.47029 * 117.58724 * 14 5 4 18 18 C 1.50697 * 109.47394 * 291.73578 * 17 14 5 19 19 C 1.38424 * 122.54003 * 96.60583 * 18 17 14 20 20 C 1.33388 * 114.92257 * 179.97438 * 19 18 17 21 21 S 1.75884 * 109.59452 * 0.02562 * 20 19 18 22 22 C 1.33388 * 122.54032 * 276.32625 * 18 17 14 23 23 H 1.08995 * 109.47383 * 64.69509 * 1 2 3 24 24 H 1.09004 * 109.47224 * 184.69088 * 1 2 3 25 25 H 1.09002 * 109.47489 * 304.69323 * 1 2 3 26 26 H 1.08997 * 109.47553 * 64.84536 * 3 2 1 27 27 H 1.09001 * 109.47361 * 304.83720 * 3 2 1 28 28 H 1.09006 * 109.46994 * 301.09250 * 4 3 2 29 29 H 1.08996 * 109.47148 * 181.09421 * 4 3 2 30 30 H 0.96993 * 120.00368 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.47271 * 300.00351 * 16 14 5 32 32 H 1.09004 * 109.46710 * 59.99836 * 16 14 5 33 33 H 1.08999 * 109.47107 * 180.02562 * 16 14 5 34 34 H 1.09002 * 109.46971 * 51.74024 * 17 14 5 35 35 H 1.09000 * 109.47029 * 171.73650 * 17 14 5 36 36 H 1.07998 * 122.53699 * 0.02562 * 19 18 17 37 37 H 1.08000 * 125.20219 * 179.97438 * 20 19 18 38 38 H 1.08001 * 125.20526 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5306 1.1869 -0.1218 5 7 3.8693 0.5252 -1.3843 6 6 4.0875 -0.8264 -1.4119 7 1 4.2148 -1.3336 -2.3569 8 6 4.1453 -1.5444 -0.2253 9 7 3.3657 -1.2143 0.7824 10 14 5.3297 -2.9793 -0.0588 11 1 6.0892 -3.1439 -1.3243 12 1 6.2757 -2.7138 1.0547 13 1 4.5663 -4.2209 0.2258 14 6 3.9744 1.3096 -2.6172 15 1 3.7270 2.3502 -2.4079 16 6 3.0022 0.7538 -3.6597 17 6 5.4038 1.2236 -3.1559 18 6 6.3370 1.9514 -2.2229 19 6 7.0680 1.3007 -1.2439 20 6 7.8462 2.0922 -0.5042 21 16 7.6741 3.7580 -1.0418 22 6 6.5253 3.2706 -2.2814 23 1 -0.3634 0.4392 -0.9290 24 1 -0.3634 -1.0242 0.0840 25 1 -0.3634 0.5849 0.8450 26 1 1.7588 1.8151 0.9302 27 1 1.6215 1.8762 -0.8435 28 1 3.9172 0.5997 0.7113 29 1 3.9754 2.1818 -0.1022 30 1 3.4058 -1.7163 1.6113 31 1 3.2496 -0.2870 -3.8689 32 1 1.9838 0.8150 -3.2757 33 1 3.0807 1.3371 -4.5771 34 1 5.7032 0.1779 -3.2266 35 1 5.4478 1.6817 -4.1440 36 1 7.0131 0.2330 -1.0912 37 1 8.4838 1.7609 0.3021 38 1 6.0442 3.9378 -2.9812 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580399275.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:12 Heat of formation + Delta-G solvation = 31.363242 kcal Electronic energy + Delta-G solvation = -19763.800404 eV Core-core repulsion = 16928.065035 eV Total energy + Delta-G solvation = -2835.735370 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -38.21043 -36.69114 -35.35601 -32.50159 -30.32765 -29.24090 -27.58029 -26.30455 -25.23675 -23.75264 -22.44644 -20.96915 -19.47075 -18.17269 -17.13675 -16.20749 -15.48024 -14.73434 -14.50730 -14.41321 -13.85114 -13.60817 -13.32683 -12.96882 -12.58185 -12.34195 -12.12567 -12.00505 -11.57346 -11.33702 -11.21773 -11.04663 -10.91569 -10.60182 -10.58386 -10.35150 -10.19215 -10.11546 -9.74080 -9.68938 -9.26632 -8.27805 -8.23332 -7.94400 -7.80688 -6.74638 -5.57069 -2.73982 1.53775 2.17134 2.46944 3.37586 3.49254 3.60796 3.62341 4.66378 5.14167 5.37898 5.48441 5.52645 5.58335 5.88234 6.02940 6.07311 6.11174 6.14577 6.21913 6.28114 6.39321 6.44962 6.45937 6.50826 6.62707 6.70178 6.71093 6.86734 6.90800 6.98302 7.04105 7.18565 7.28929 7.85355 8.02515 8.48304 8.74255 9.37889 10.08949 10.54581 11.42771 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.008091 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.820714 B = 3459.743012 C = 4112.769512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.290 6.290 3 C 0.061 3.939 4 C 0.150 3.850 5 N -0.578 5.578 6 C -0.249 4.249 7 H 0.073 0.927 8 C 0.018 3.982 9 N -0.838 5.838 10 Si 0.848 3.152 11 H -0.282 1.282 12 H -0.293 1.293 13 H -0.298 1.298 14 C 0.183 3.817 15 H 0.048 0.952 16 C -0.154 4.154 17 C -0.076 4.076 18 C -0.057 4.057 19 C -0.095 4.095 20 C -0.219 4.219 21 S 0.036 5.964 22 C -0.230 4.230 23 H 0.014 0.986 24 H 0.067 0.933 25 H 0.015 0.985 26 H 0.011 0.989 27 H 0.006 0.994 28 H 0.117 0.883 29 H 0.017 0.983 30 H 0.244 0.756 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.033 0.967 34 H 0.079 0.921 35 H 0.055 0.945 36 H 0.145 0.855 37 H 0.155 0.845 38 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.838 8.194 -3.990 9.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.205 6.205 3 C -0.019 4.019 4 C 0.024 3.976 5 N -0.299 5.299 6 C -0.377 4.377 7 H 0.091 0.909 8 C -0.181 4.181 9 N -0.481 5.481 10 Si 0.677 3.323 11 H -0.207 1.207 12 H -0.220 1.220 13 H -0.226 1.226 14 C 0.074 3.926 15 H 0.066 0.934 16 C -0.213 4.213 17 C -0.118 4.118 18 C -0.069 4.069 19 C -0.125 4.125 20 C -0.354 4.354 21 S 0.298 5.702 22 C -0.364 4.364 23 H 0.032 0.968 24 H 0.086 0.914 25 H 0.033 0.967 26 H 0.029 0.971 27 H 0.024 0.976 28 H 0.134 0.866 29 H 0.035 0.965 30 H 0.055 0.945 31 H 0.075 0.925 32 H 0.067 0.933 33 H 0.052 0.948 34 H 0.098 0.902 35 H 0.074 0.926 36 H 0.162 0.838 37 H 0.173 0.827 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 3.568 9.342 -3.346 10.545 hybrid contribution -0.490 -1.903 -0.161 1.971 sum 3.078 7.439 -3.508 8.782 Atomic orbital electron populations 1.22597 0.87207 1.00541 0.97020 1.88782 1.13118 1.24500 1.94138 1.22969 0.98901 0.85164 0.94883 1.21510 0.89809 0.94272 0.92019 1.44019 1.80044 1.04189 1.01643 1.18816 1.42874 0.83692 0.92284 0.90945 1.24628 0.99382 0.97038 0.97040 1.70390 1.32636 1.40059 1.04999 0.87007 0.84151 0.83632 0.77469 1.20697 1.21964 1.22587 1.20180 0.91002 0.94019 0.87411 0.93370 1.22212 1.00149 1.01329 0.97622 1.20947 0.95804 1.00196 0.94808 1.18957 0.97609 0.92496 0.97827 1.20266 0.95281 1.01929 0.95047 1.25433 1.08140 0.95069 1.06753 1.83871 1.44310 1.10235 1.31815 1.25211 1.06961 0.98771 1.05477 0.96798 0.91414 0.96651 0.97125 0.97612 0.86589 0.96491 0.94491 0.92460 0.93341 0.94750 0.90242 0.92644 0.83757 0.82697 0.82818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.49 11.01 101.05 1.11 1.60 16 2 O -0.29 -7.03 7.65 -35.23 -0.27 -7.30 16 3 C 0.06 1.35 6.26 37.16 0.23 1.58 16 4 C 0.15 3.46 5.52 -4.04 -0.02 3.44 16 5 N -0.58 -13.08 2.19 -165.65 -0.36 -13.44 16 6 C -0.25 -6.27 7.96 -15.06 -0.12 -6.39 16 7 H 0.07 1.86 6.90 -52.49 -0.36 1.50 16 8 C 0.02 0.48 4.92 -17.43 -0.09 0.39 16 9 N -0.84 -22.80 7.95 55.49 0.44 -22.36 16 10 Si 0.85 20.71 29.67 -169.99 -5.04 15.66 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 13 H -0.30 -7.57 7.11 56.52 0.40 -7.17 16 14 C 0.18 3.50 2.72 -67.93 -0.18 3.32 16 15 H 0.05 0.91 7.86 -51.93 -0.41 0.50 16 16 C -0.15 -2.80 9.12 37.16 0.34 -2.46 16 17 C -0.08 -1.31 4.94 -27.88 -0.14 -1.45 16 18 C -0.06 -0.98 4.85 -106.25 -0.52 -1.50 16 19 C -0.10 -1.72 9.96 -41.21 -0.41 -2.13 16 20 C -0.22 -3.53 11.23 29.04 0.33 -3.20 16 21 S 0.04 0.52 23.34 -107.50 -2.51 -1.98 16 22 C -0.23 -3.56 10.99 29.04 0.32 -3.24 16 23 H 0.01 0.25 8.14 -51.93 -0.42 -0.17 16 24 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.01 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.01 0.12 8.14 -51.93 -0.42 -0.30 16 28 H 0.12 3.03 5.20 -51.93 -0.27 2.76 16 29 H 0.02 0.37 8.05 -51.93 -0.42 -0.05 16 30 H 0.24 6.63 8.31 -40.82 -0.34 6.29 16 31 H 0.06 1.11 7.01 -51.93 -0.36 0.74 16 32 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 1.51 7.29 -51.93 -0.38 1.13 16 35 H 0.05 0.84 8.13 -51.93 -0.42 0.41 16 36 H 0.14 2.85 8.06 -52.49 -0.42 2.42 16 37 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 38 H 0.15 2.06 8.06 -52.49 -0.42 1.64 16 LS Contribution 321.49 15.07 4.84 4.84 Total: -1.00 -27.25 321.49 -8.03 -35.28 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -5.98 Total: -0.66 kcal Atomic # 6 Polarization: -10.89 SS G_CDS: 0.85 Total: -10.04 kcal Atomic # 7 Polarization: -35.88 SS G_CDS: 0.08 Total: -35.80 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: -0.27 Total: -7.30 kcal Atomic # 14 Polarization: 20.71 SS G_CDS: -5.04 Total: 15.66 kcal Atomic # 16 Polarization: 0.52 SS G_CDS: -2.51 Total: -1.98 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -27.25 -8.03 -35.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580399275.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.645 kcal (2) G-P(sol) polarization free energy of solvation -27.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds