Wall clock time and date at job start Mon Mar 30 2020 00:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42900 * 113.99384 * 2 1 4 4 C 1.53003 * 109.46910 * 184.84318 * 3 2 1 5 5 N 1.46502 * 109.47071 * 61.09045 * 4 3 2 6 6 C 1.36942 * 120.00045 * 265.09305 * 5 4 3 7 7 H 1.08002 * 119.99937 * 172.35209 * 6 5 4 8 8 C 1.38812 * 119.99673 * 352.34563 * 6 5 4 9 9 N 1.31615 * 120.00458 * 35.91452 * 8 6 5 10 10 Si 1.86802 * 119.99591 * 215.91362 * 8 6 5 11 11 H 1.48500 * 109.47604 * 0.02562 * 10 8 6 12 12 H 1.48499 * 109.47174 * 120.00475 * 10 8 6 13 13 H 1.48500 * 109.47096 * 240.00073 * 10 8 6 14 14 C 1.46502 * 119.99922 * 85.09264 * 5 4 3 15 15 H 1.08995 * 109.46959 * 357.58809 * 14 5 4 16 16 C 1.53004 * 109.47046 * 237.58640 * 14 5 4 17 17 C 1.53000 * 109.47029 * 117.58724 * 14 5 4 18 18 C 1.50697 * 109.47394 * 291.73578 * 17 14 5 19 19 C 1.38424 * 122.54003 * 96.60583 * 18 17 14 20 20 C 1.33388 * 114.92257 * 179.97438 * 19 18 17 21 21 S 1.75884 * 109.59452 * 0.02562 * 20 19 18 22 22 C 1.33388 * 122.54032 * 276.32625 * 18 17 14 23 23 H 1.08995 * 109.47383 * 64.69509 * 1 2 3 24 24 H 1.09004 * 109.47224 * 184.69088 * 1 2 3 25 25 H 1.09002 * 109.47489 * 304.69323 * 1 2 3 26 26 H 1.08997 * 109.47553 * 64.84536 * 3 2 1 27 27 H 1.09001 * 109.47361 * 304.83720 * 3 2 1 28 28 H 1.09006 * 109.46994 * 301.09250 * 4 3 2 29 29 H 1.08996 * 109.47148 * 181.09421 * 4 3 2 30 30 H 0.96993 * 120.00368 * 179.97438 * 9 8 6 31 31 H 1.09001 * 109.47271 * 300.00351 * 16 14 5 32 32 H 1.09004 * 109.46710 * 59.99836 * 16 14 5 33 33 H 1.08999 * 109.47107 * 180.02562 * 16 14 5 34 34 H 1.09002 * 109.46971 * 51.74024 * 17 14 5 35 35 H 1.09000 * 109.47029 * 171.73650 * 17 14 5 36 36 H 1.07998 * 122.53699 * 0.02562 * 19 18 17 37 37 H 1.08000 * 125.20219 * 179.97438 * 20 19 18 38 38 H 1.08001 * 125.20526 * 0.02562 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0101 1.3055 0.0000 4 6 3.5306 1.1869 -0.1218 5 7 3.8693 0.5252 -1.3843 6 6 4.0875 -0.8264 -1.4119 7 1 4.2148 -1.3336 -2.3569 8 6 4.1453 -1.5444 -0.2253 9 7 3.3657 -1.2143 0.7824 10 14 5.3297 -2.9793 -0.0588 11 1 6.0892 -3.1439 -1.3243 12 1 6.2757 -2.7138 1.0547 13 1 4.5663 -4.2209 0.2258 14 6 3.9744 1.3096 -2.6172 15 1 3.7270 2.3502 -2.4079 16 6 3.0022 0.7538 -3.6597 17 6 5.4038 1.2236 -3.1559 18 6 6.3370 1.9514 -2.2229 19 6 7.0680 1.3007 -1.2439 20 6 7.8462 2.0922 -0.5042 21 16 7.6741 3.7580 -1.0418 22 6 6.5253 3.2706 -2.2814 23 1 -0.3634 0.4392 -0.9290 24 1 -0.3634 -1.0242 0.0840 25 1 -0.3634 0.5849 0.8450 26 1 1.7588 1.8151 0.9302 27 1 1.6215 1.8762 -0.8435 28 1 3.9172 0.5997 0.7113 29 1 3.9754 2.1818 -0.1022 30 1 3.4058 -1.7163 1.6113 31 1 3.2496 -0.2870 -3.8689 32 1 1.9838 0.8150 -3.2757 33 1 3.0807 1.3371 -4.5771 34 1 5.7032 0.1779 -3.2266 35 1 5.4478 1.6817 -4.1440 36 1 7.0131 0.2330 -1.0912 37 1 8.4838 1.7609 0.3021 38 1 6.0442 3.9378 -2.9812 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580399275.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:12 Heat of formation + Delta-G solvation = 18.143913 kcal Electronic energy + Delta-G solvation = -19764.373638 eV Core-core repulsion = 16928.065035 eV Total energy + Delta-G solvation = -2836.308603 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.63810 -38.33996 -37.00590 -34.23980 -32.09781 -30.63539 -29.32430 -27.64081 -26.91110 -25.55463 -23.79978 -22.66167 -21.16624 -19.50208 -18.46414 -17.94186 -17.20624 -16.34881 -16.22894 -15.96939 -15.61365 -15.23400 -15.08706 -14.43683 -13.98500 -13.66553 -13.54699 -13.48881 -13.16806 -13.00520 -12.89843 -12.72408 -12.47872 -12.39658 -12.15976 -12.05288 -11.90801 -11.52722 -11.45321 -11.37509 -11.06534 -10.00900 -9.84429 -9.52287 -9.06002 -8.56816 -7.56429 -4.70112 0.27976 0.96184 1.22588 1.48960 1.59065 1.61969 2.04632 2.70361 3.36987 3.61534 3.78512 4.18714 4.30632 4.49954 4.52837 4.61758 4.65588 4.71701 4.74072 4.80204 4.86523 4.91308 4.93191 5.05383 5.08765 5.15676 5.21474 5.24748 5.35537 5.48748 5.63501 5.73101 5.92157 5.97640 6.00982 6.55851 7.05538 7.43287 8.20934 8.62463 9.41514 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.016324 B = 0.008091 C = 0.006806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.820714 B = 3459.743012 C = 4112.769512 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.329 6.329 3 C 0.066 3.934 4 C 0.154 3.846 5 N -0.584 5.584 6 C -0.229 4.229 7 H 0.064 0.936 8 C -0.023 4.023 9 N -0.854 5.854 10 Si 0.890 3.110 11 H -0.279 1.279 12 H -0.301 1.301 13 H -0.312 1.312 14 C 0.178 3.822 15 H 0.058 0.942 16 C -0.145 4.145 17 C -0.066 4.066 18 C -0.080 4.080 19 C -0.121 4.121 20 C -0.228 4.228 21 S 0.088 5.912 22 C -0.224 4.224 23 H 0.027 0.973 24 H 0.069 0.931 25 H 0.032 0.968 26 H 0.019 0.981 27 H 0.016 0.984 28 H 0.085 0.915 29 H 0.028 0.972 30 H 0.234 0.766 31 H 0.038 0.962 32 H 0.032 0.968 33 H 0.069 0.931 34 H 0.055 0.945 35 H 0.085 0.915 36 H 0.115 0.885 37 H 0.168 0.832 38 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.992 10.443 -5.175 12.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C -0.014 4.014 4 C 0.028 3.972 5 N -0.305 5.305 6 C -0.358 4.358 7 H 0.082 0.918 8 C -0.220 4.220 9 N -0.499 5.499 10 Si 0.721 3.279 11 H -0.205 1.205 12 H -0.229 1.229 13 H -0.241 1.241 14 C 0.071 3.929 15 H 0.077 0.923 16 C -0.204 4.204 17 C -0.107 4.107 18 C -0.092 4.092 19 C -0.152 4.152 20 C -0.363 4.363 21 S 0.351 5.649 22 C -0.359 4.359 23 H 0.045 0.955 24 H 0.088 0.912 25 H 0.050 0.950 26 H 0.037 0.963 27 H 0.034 0.966 28 H 0.103 0.897 29 H 0.046 0.954 30 H 0.044 0.956 31 H 0.057 0.943 32 H 0.051 0.949 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.103 0.897 36 H 0.133 0.867 37 H 0.186 0.814 38 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 3.733 11.609 -4.563 13.020 hybrid contribution -0.502 -2.489 0.160 2.544 sum 3.231 9.120 -4.403 10.630 Atomic orbital electron populations 1.22694 0.85117 1.01234 0.98375 1.88709 1.15616 1.25725 1.94446 1.22886 0.98095 0.84752 0.95624 1.21303 0.90633 0.94036 0.91249 1.44072 1.80076 1.03469 1.02886 1.18835 1.40543 0.84918 0.91533 0.91774 1.24962 1.00811 0.98658 0.97545 1.70533 1.33755 1.40780 1.04865 0.86351 0.82957 0.81655 0.76941 1.20450 1.22894 1.24130 1.20408 0.92328 0.93949 0.86237 0.92346 1.22100 0.98732 1.00772 0.98783 1.20788 0.94392 0.99231 0.96313 1.18918 0.98580 0.93357 0.98341 1.20171 0.97259 1.00928 0.96798 1.25700 1.07551 0.96434 1.06597 1.83711 1.42943 1.07896 1.30400 1.25553 1.06355 0.98361 1.05622 0.95499 0.91221 0.94952 0.96285 0.96630 0.89706 0.95366 0.95594 0.94259 0.94892 0.91170 0.92628 0.89704 0.86678 0.81436 0.80240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.90 11.01 113.37 1.25 2.15 16 2 O -0.33 -15.82 7.65 -148.98 -1.14 -16.96 16 3 C 0.07 2.87 6.26 71.98 0.45 3.32 16 4 C 0.15 7.05 5.52 86.38 0.48 7.52 16 5 N -0.58 -26.20 2.19 -678.01 -1.48 -27.68 16 6 C -0.23 -11.68 7.96 84.03 0.67 -11.01 16 7 H 0.06 3.35 6.90 -2.91 -0.02 3.33 16 8 C -0.02 -1.23 4.92 84.86 0.42 -0.81 16 9 N -0.85 -47.57 7.95 21.65 0.17 -47.40 16 10 Si 0.89 44.02 29.67 68.60 2.04 46.06 16 11 H -0.28 -13.50 7.11 99.48 0.71 -12.79 16 12 H -0.30 -15.15 7.11 99.48 0.71 -14.44 16 13 H -0.31 -16.04 7.11 99.48 0.71 -15.34 16 14 C 0.18 6.50 2.72 44.99 0.12 6.62 16 15 H 0.06 2.03 7.86 -2.39 -0.02 2.01 16 16 C -0.14 -4.98 9.12 71.98 0.66 -4.32 16 17 C -0.07 -2.17 4.94 29.85 0.15 -2.02 16 18 C -0.08 -2.63 4.85 -20.92 -0.10 -2.73 16 19 C -0.12 -4.34 9.96 21.22 0.21 -4.13 16 20 C -0.23 -7.05 11.23 66.72 0.75 -6.30 16 21 S 0.09 2.30 23.34 -56.49 -1.32 0.98 16 22 C -0.22 -6.20 10.99 66.72 0.73 -5.47 16 23 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 24 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 25 H 0.03 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 28 H 0.09 4.51 5.20 -2.38 -0.01 4.50 16 29 H 0.03 1.20 8.05 -2.39 -0.02 1.19 16 30 H 0.23 13.09 8.31 -92.71 -0.77 12.32 16 31 H 0.04 1.47 7.01 -2.39 -0.02 1.45 16 32 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.05 2.09 7.29 -2.39 -0.02 2.07 16 35 H 0.08 2.28 8.13 -2.39 -0.02 2.26 16 36 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 37 H 0.17 4.57 8.06 -2.91 -0.02 4.55 16 38 H 0.18 3.97 8.06 -2.91 -0.02 3.94 16 Total: -1.00 -58.49 321.49 5.07 -53.43 By element: Atomic # 1 Polarization: 7.74 SS G_CDS: 1.02 Total: 8.76 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 5.78 Total: -17.18 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -1.31 Total: -75.08 kcal Atomic # 8 Polarization: -15.82 SS G_CDS: -1.14 Total: -16.96 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 2.04 Total: 46.06 kcal Atomic # 16 Polarization: 2.30 SS G_CDS: -1.32 Total: 0.98 kcal Total: -58.49 5.07 -53.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580399275.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.570 kcal (2) G-P(sol) polarization free energy of solvation -58.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.078 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.426 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds