Wall clock time and date at job start Mon Mar 30 2020 00:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42894 * 113.99937 * 2 1 4 4 C 1.53001 * 109.46854 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47039 * 65.00196 * 4 3 2 6 6 C 1.36942 * 120.00306 * 95.86135 * 5 4 3 7 7 H 1.08002 * 119.99857 * 217.08148 * 6 5 4 8 8 C 1.38812 * 119.99359 * 37.08437 * 6 5 4 9 9 N 1.31619 * 120.00426 * 20.23593 * 8 6 5 10 10 Si 1.86809 * 119.99487 * 200.50911 * 8 6 5 11 11 H 1.48499 * 109.46967 * 60.00392 * 10 8 6 12 12 H 1.48501 * 109.46913 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47060 * 300.00197 * 10 8 6 14 14 C 1.46504 * 120.00049 * 275.86016 * 5 4 3 15 15 H 1.09005 * 109.46748 * 4.47052 * 14 5 4 16 16 C 1.53000 * 109.47206 * 124.46493 * 14 5 4 17 17 C 1.52997 * 109.47504 * 244.46736 * 14 5 4 18 18 C 1.50708 * 109.46873 * 64.53755 * 17 14 5 19 19 C 1.38417 * 122.54070 * 90.00283 * 18 17 14 20 20 C 1.33385 * 114.92238 * 179.97438 * 19 18 17 21 21 S 1.75882 * 109.59153 * 359.97438 * 20 19 18 22 22 C 1.33392 * 122.53607 * 269.71035 * 18 17 14 23 23 H 1.08998 * 109.47210 * 300.00328 * 1 2 3 24 24 H 1.08999 * 109.46731 * 60.00054 * 1 2 3 25 25 H 1.08996 * 109.47022 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47500 * 59.99654 * 3 2 1 27 27 H 1.09003 * 109.47366 * 299.99532 * 3 2 1 28 28 H 1.08997 * 109.47456 * 304.99617 * 4 3 2 29 29 H 1.09009 * 109.47065 * 184.99960 * 4 3 2 30 30 H 0.96998 * 119.99428 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.47225 * 305.74290 * 16 14 5 32 32 H 1.08996 * 109.46774 * 65.73915 * 16 14 5 33 33 H 1.08999 * 109.47265 * 185.74274 * 16 14 5 34 34 H 1.08997 * 109.47497 * 184.53695 * 17 14 5 35 35 H 1.08996 * 109.47182 * 304.54195 * 17 14 5 36 36 H 1.08005 * 122.53748 * 359.95227 * 19 18 17 37 37 H 1.08001 * 125.20096 * 179.97438 * 20 19 18 38 38 H 1.07995 * 125.20271 * 0.02601 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.3827 1.3475 -2.2979 7 1 4.1453 1.0599 -3.3115 8 6 5.0996 2.5114 -2.0564 9 7 5.7293 2.6711 -0.9117 10 14 5.1642 3.8546 -3.3532 11 1 3.7879 4.3336 -3.6387 12 1 5.9887 4.9846 -2.8547 13 1 5.7679 3.3129 -4.5972 14 6 3.9835 -0.8952 -1.3823 15 1 3.5565 -1.3428 -0.4848 16 6 3.1514 -1.3015 -2.6002 17 6 5.4221 -1.3845 -1.5614 18 6 6.2140 -1.0829 -0.3151 19 6 6.3070 -1.9724 0.7414 20 6 7.0473 -1.5507 1.7677 21 16 7.6799 0.0529 1.4189 22 6 6.8831 0.0590 -0.1490 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.6887 1.8464 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 3.8509 0.5685 0.8427 29 1 3.9786 2.1765 0.0902 30 1 6.2304 3.4843 -0.7432 31 1 2.1550 -0.8667 -2.5209 32 1 3.6346 -0.9394 -3.5076 33 1 3.0716 -2.3879 -2.6398 34 1 5.4206 -2.4598 -1.7396 35 1 5.8756 -0.8758 -2.4120 36 1 5.8168 -2.9348 0.7354 37 1 7.2303 -2.1087 2.6741 38 1 6.9274 0.8647 -0.8669 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580399276.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:14 Heat of formation + Delta-G solvation = 5.500835 kcal Electronic energy + Delta-G solvation = -19773.129374 eV Core-core repulsion = 16936.272526 eV Total energy + Delta-G solvation = -2836.856848 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -37.97214 -37.06828 -35.43753 -32.39881 -30.65655 -28.95588 -27.66854 -25.89434 -25.64135 -24.06611 -22.17687 -21.01959 -19.53573 -17.74391 -16.62730 -16.20019 -15.62471 -15.12714 -14.85462 -14.52099 -14.13781 -13.87968 -13.28289 -12.81898 -12.42181 -12.17130 -11.89888 -11.75782 -11.42070 -11.34786 -11.16070 -10.97322 -10.93577 -10.73128 -10.70138 -10.34848 -10.31426 -10.00740 -9.74156 -9.65514 -9.42059 -8.91180 -8.42938 -7.76859 -7.41903 -6.46809 -5.77631 -3.32936 2.03999 2.62255 3.01831 3.35569 3.42311 3.45115 3.73605 4.48240 4.58857 5.28728 5.44917 5.67226 5.70116 5.73603 5.96619 6.06234 6.14990 6.17739 6.26099 6.32254 6.42780 6.50796 6.57578 6.67294 6.79358 6.82442 6.92673 7.00363 7.11248 7.29464 7.34114 7.54267 7.60739 7.76420 7.85456 7.95443 8.54844 9.23382 9.86767 10.47990 11.20468 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012660 B = 0.010006 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.151407 B = 2797.528436 C = 3959.346799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.381 6.381 3 C 0.040 3.960 4 C 0.157 3.843 5 N -0.568 5.568 6 C -0.238 4.238 7 H 0.060 0.940 8 C 0.005 3.995 9 N -0.889 5.889 10 Si 0.892 3.108 11 H -0.287 1.287 12 H -0.292 1.292 13 H -0.284 1.284 14 C 0.182 3.818 15 H 0.055 0.945 16 C -0.147 4.147 17 C -0.063 4.063 18 C -0.125 4.125 19 C -0.117 4.117 20 C -0.251 4.251 21 S 0.033 5.967 22 C -0.117 4.117 23 H 0.028 0.972 24 H 0.031 0.969 25 H 0.073 0.927 26 H 0.024 0.976 27 H 0.043 0.957 28 H 0.028 0.972 29 H 0.108 0.892 30 H 0.254 0.746 31 H 0.050 0.950 32 H 0.048 0.952 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.070 0.930 36 H 0.123 0.877 37 H 0.146 0.854 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.411 -5.713 2.872 6.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.299 6.299 3 C -0.038 4.038 4 C 0.030 3.970 5 N -0.287 5.287 6 C -0.368 4.368 7 H 0.077 0.923 8 C -0.193 4.193 9 N -0.534 5.534 10 Si 0.722 3.278 11 H -0.213 1.213 12 H -0.218 1.218 13 H -0.210 1.210 14 C 0.074 3.926 15 H 0.073 0.927 16 C -0.206 4.206 17 C -0.105 4.105 18 C -0.135 4.135 19 C -0.148 4.148 20 C -0.386 4.386 21 S 0.295 5.705 22 C -0.252 4.252 23 H 0.046 0.954 24 H 0.050 0.950 25 H 0.091 0.909 26 H 0.042 0.958 27 H 0.061 0.939 28 H 0.047 0.953 29 H 0.126 0.874 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.141 0.859 37 H 0.163 0.837 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -1.259 -4.709 3.726 6.135 hybrid contribution -1.254 0.132 -1.238 1.767 sum -2.513 -4.577 2.488 5.784 Atomic orbital electron populations 1.22588 0.83701 1.01263 0.98860 1.87965 1.17372 1.29487 1.95104 1.23621 0.99150 0.83276 0.97784 1.20979 0.86769 1.01378 0.87850 1.43705 1.73383 0.99169 1.12434 1.19039 1.26817 1.03053 0.87863 0.92282 1.25091 0.96652 1.00683 0.96868 1.69812 1.32704 1.26565 1.24301 0.86537 0.77447 0.82108 0.81667 1.21336 1.21816 1.21009 1.20349 0.91095 0.85559 0.95588 0.92720 1.22049 1.00550 0.98028 0.99955 1.20753 0.97313 0.98068 0.94349 1.18764 1.02033 0.94625 0.98048 1.20057 1.00427 1.00519 0.93847 1.25204 1.09469 1.00126 1.03773 1.84001 1.53444 1.15315 1.17728 1.26346 0.99316 1.01339 0.98213 0.95375 0.94995 0.90883 0.95791 0.93900 0.95345 0.87440 0.93518 0.93084 0.93336 0.94852 0.93695 0.91128 0.85936 0.83653 0.78609 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.38 -7.35 9.57 -35.23 -0.34 -7.69 16 3 C 0.04 0.81 6.28 37.16 0.23 1.05 16 4 C 0.16 3.57 5.59 -4.04 -0.02 3.55 16 5 N -0.57 -12.94 1.82 -165.66 -0.30 -13.24 16 6 C -0.24 -5.85 8.26 -15.06 -0.12 -5.98 16 7 H 0.06 1.50 6.83 -52.49 -0.36 1.14 16 8 C 0.01 0.13 4.80 -17.43 -0.08 0.05 16 9 N -0.89 -22.49 8.84 55.49 0.49 -22.00 16 10 Si 0.89 20.41 29.60 -169.99 -5.03 15.37 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 14 C 0.18 3.75 2.17 -67.93 -0.15 3.60 16 15 H 0.05 1.18 7.39 -51.93 -0.38 0.79 16 16 C -0.15 -2.78 8.94 37.16 0.33 -2.45 16 17 C -0.06 -1.25 4.93 -27.88 -0.14 -1.39 16 18 C -0.12 -2.54 4.84 -106.25 -0.51 -3.06 16 19 C -0.12 -2.13 9.98 -41.21 -0.41 -2.55 16 20 C -0.25 -4.38 11.23 29.04 0.33 -4.05 16 21 S 0.03 0.63 23.34 -107.50 -2.51 -1.88 16 22 C -0.12 -2.53 10.23 29.04 0.30 -2.23 16 23 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 24 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.04 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.03 0.67 8.08 -51.93 -0.42 0.25 16 29 H 0.11 2.69 5.52 -51.92 -0.29 2.41 16 30 H 0.25 6.43 8.31 -40.82 -0.34 6.09 16 31 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.94 7.14 -51.93 -0.37 0.57 16 33 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 34 H 0.04 0.79 8.13 -51.93 -0.42 0.37 16 35 H 0.07 1.52 7.60 -51.93 -0.39 1.13 16 36 H 0.12 1.99 8.06 -52.48 -0.42 1.56 16 37 H 0.15 2.13 8.06 -52.49 -0.42 1.71 16 38 H 0.20 4.81 5.67 -52.49 -0.30 4.51 16 LS Contribution 320.53 15.07 4.83 4.83 Total: -1.00 -25.16 320.53 -7.87 -33.03 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -5.87 Total: 3.42 kcal Atomic # 6 Polarization: -12.71 SS G_CDS: 0.86 Total: -11.85 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.19 Total: -35.24 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: -0.34 Total: -7.69 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.37 kcal Atomic # 16 Polarization: 0.63 SS G_CDS: -2.51 Total: -1.88 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -25.16 -7.87 -33.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580399276.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.529 kcal (2) G-P(sol) polarization free energy of solvation -25.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds