Wall clock time and date at job start Mon Mar 30 2020 00:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42910 * 1 3 3 C 1.42894 * 113.99937 * 2 1 4 4 C 1.53001 * 109.46854 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47039 * 65.00196 * 4 3 2 6 6 C 1.36942 * 120.00306 * 95.86135 * 5 4 3 7 7 H 1.08002 * 119.99857 * 217.08148 * 6 5 4 8 8 C 1.38812 * 119.99359 * 37.08437 * 6 5 4 9 9 N 1.31619 * 120.00426 * 20.23593 * 8 6 5 10 10 Si 1.86809 * 119.99487 * 200.50911 * 8 6 5 11 11 H 1.48499 * 109.46967 * 60.00392 * 10 8 6 12 12 H 1.48501 * 109.46913 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47060 * 300.00197 * 10 8 6 14 14 C 1.46504 * 120.00049 * 275.86016 * 5 4 3 15 15 H 1.09005 * 109.46748 * 4.47052 * 14 5 4 16 16 C 1.53000 * 109.47206 * 124.46493 * 14 5 4 17 17 C 1.52997 * 109.47504 * 244.46736 * 14 5 4 18 18 C 1.50708 * 109.46873 * 64.53755 * 17 14 5 19 19 C 1.38417 * 122.54070 * 90.00283 * 18 17 14 20 20 C 1.33385 * 114.92238 * 179.97438 * 19 18 17 21 21 S 1.75882 * 109.59153 * 359.97438 * 20 19 18 22 22 C 1.33392 * 122.53607 * 269.71035 * 18 17 14 23 23 H 1.08998 * 109.47210 * 300.00328 * 1 2 3 24 24 H 1.08999 * 109.46731 * 60.00054 * 1 2 3 25 25 H 1.08996 * 109.47022 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47500 * 59.99654 * 3 2 1 27 27 H 1.09003 * 109.47366 * 299.99532 * 3 2 1 28 28 H 1.08997 * 109.47456 * 304.99617 * 4 3 2 29 29 H 1.09009 * 109.47065 * 184.99960 * 4 3 2 30 30 H 0.96998 * 119.99428 * 179.97438 * 9 8 6 31 31 H 1.09003 * 109.47225 * 305.74290 * 16 14 5 32 32 H 1.08996 * 109.46774 * 65.73915 * 16 14 5 33 33 H 1.08999 * 109.47265 * 185.74274 * 16 14 5 34 34 H 1.08997 * 109.47497 * 184.53695 * 17 14 5 35 35 H 1.08996 * 109.47182 * 304.54195 * 17 14 5 36 36 H 1.08005 * 122.53748 * 359.95227 * 19 18 17 37 37 H 1.08001 * 125.20096 * 179.97438 * 20 19 18 38 38 H 1.07995 * 125.20271 * 0.02601 * 22 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 7 3.9767 0.5639 -1.2509 6 6 4.3827 1.3475 -2.2979 7 1 4.1453 1.0599 -3.3115 8 6 5.0996 2.5114 -2.0564 9 7 5.7293 2.6711 -0.9117 10 14 5.1642 3.8546 -3.3532 11 1 3.7879 4.3336 -3.6387 12 1 5.9887 4.9846 -2.8547 13 1 5.7679 3.3129 -4.5972 14 6 3.9835 -0.8952 -1.3823 15 1 3.5565 -1.3428 -0.4848 16 6 3.1514 -1.3015 -2.6002 17 6 5.4221 -1.3845 -1.5614 18 6 6.2140 -1.0829 -0.3151 19 6 6.3070 -1.9724 0.7414 20 6 7.0473 -1.5507 1.7677 21 16 7.6799 0.0529 1.4189 22 6 6.8831 0.0590 -0.1490 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 0.0005 26 1 1.6887 1.8464 0.8899 27 1 1.6887 1.8463 -0.8900 28 1 3.8509 0.5685 0.8427 29 1 3.9786 2.1765 0.0902 30 1 6.2304 3.4843 -0.7432 31 1 2.1550 -0.8667 -2.5209 32 1 3.6346 -0.9394 -3.5076 33 1 3.0716 -2.3879 -2.6398 34 1 5.4206 -2.4598 -1.7396 35 1 5.8756 -0.8758 -2.4120 36 1 5.8168 -2.9348 0.7354 37 1 7.2303 -2.1087 2.6741 38 1 6.9274 0.8647 -0.8669 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580399276.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:14 Heat of formation + Delta-G solvation = -6.015416 kcal Electronic energy + Delta-G solvation = -19773.628756 eV Core-core repulsion = 16936.272526 eV Total energy + Delta-G solvation = -2837.356230 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.56808 -38.55188 -37.06950 -34.17483 -32.38850 -30.47970 -29.33512 -27.46323 -27.02255 -25.84132 -23.67312 -22.69656 -21.27306 -19.29314 -18.22605 -17.87574 -17.16530 -16.68960 -16.61457 -16.02689 -15.66116 -15.51023 -15.01136 -14.36293 -13.99372 -13.65597 -13.43826 -13.36416 -13.02693 -12.98663 -12.84498 -12.64155 -12.50754 -12.41625 -12.21250 -12.12765 -11.93384 -11.71473 -11.47853 -11.25305 -11.09152 -10.38925 -10.33548 -9.27138 -8.95962 -8.30399 -7.66775 -5.24240 0.54722 1.15403 1.49128 1.49767 1.54111 1.57296 2.21140 2.59473 3.16617 3.37300 3.74875 4.33033 4.45826 4.49502 4.53717 4.65211 4.65540 4.68186 4.78601 4.85568 4.87150 4.91007 4.95211 5.10813 5.20220 5.26108 5.31665 5.36521 5.49645 5.63617 5.69798 5.76507 5.90267 6.01357 6.16610 6.49353 6.62838 7.33235 8.03743 8.60410 9.26671 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.012660 B = 0.010006 C = 0.007070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.151407 B = 2797.528436 C = 3959.346799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.399 6.399 3 C 0.054 3.946 4 C 0.164 3.836 5 N -0.572 5.572 6 C -0.239 4.239 7 H 0.051 0.949 8 C -0.027 4.027 9 N -0.897 5.897 10 Si 0.939 3.061 11 H -0.290 1.290 12 H -0.299 1.299 13 H -0.285 1.285 14 C 0.183 3.817 15 H 0.050 0.950 16 C -0.136 4.136 17 C -0.058 4.058 18 C -0.125 4.125 19 C -0.130 4.130 20 C -0.232 4.232 21 S 0.036 5.964 22 C -0.152 4.152 23 H 0.043 0.957 24 H 0.034 0.966 25 H 0.095 0.905 26 H 0.041 0.959 27 H 0.029 0.971 28 H 0.014 0.986 29 H 0.082 0.918 30 H 0.247 0.753 31 H 0.040 0.960 32 H 0.037 0.963 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.046 0.954 36 H 0.150 0.850 37 H 0.181 0.819 38 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.309 -7.442 3.621 8.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.318 6.318 3 C -0.025 4.025 4 C 0.038 3.962 5 N -0.292 5.292 6 C -0.370 4.370 7 H 0.068 0.932 8 C -0.224 4.224 9 N -0.542 5.542 10 Si 0.770 3.230 11 H -0.217 1.217 12 H -0.225 1.225 13 H -0.211 1.211 14 C 0.076 3.924 15 H 0.068 0.932 16 C -0.195 4.195 17 C -0.100 4.100 18 C -0.136 4.136 19 C -0.161 4.161 20 C -0.367 4.367 21 S 0.298 5.702 22 C -0.288 4.288 23 H 0.062 0.938 24 H 0.053 0.947 25 H 0.114 0.886 26 H 0.059 0.941 27 H 0.048 0.952 28 H 0.032 0.968 29 H 0.099 0.901 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.167 0.833 37 H 0.198 0.802 38 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.169 -6.449 4.474 8.143 hybrid contribution -1.000 0.604 -1.427 1.844 sum -3.169 -5.845 3.047 7.314 Atomic orbital electron populations 1.22814 0.81176 1.03102 0.99746 1.87908 1.20050 1.28564 1.95259 1.23260 0.97340 0.83978 0.97890 1.20734 0.88578 0.99553 0.87378 1.43751 1.73511 1.00067 1.11878 1.19027 1.26478 1.03479 0.87985 0.93186 1.25496 0.96950 1.01928 0.98053 1.69962 1.32980 1.26142 1.25100 0.85809 0.76787 0.80288 0.80163 1.21657 1.22532 1.21128 1.20403 0.91744 0.84192 0.96070 0.93209 1.21925 0.99320 0.99770 0.98476 1.20696 0.96491 0.99357 0.93460 1.18987 1.01228 0.94622 0.98725 1.20242 1.01189 1.01339 0.93299 1.25628 1.07622 0.98889 1.04553 1.83909 1.53253 1.16866 1.16205 1.26044 1.01855 1.01425 0.99433 0.93810 0.94731 0.88618 0.94125 0.95248 0.96807 0.90072 0.94347 0.94053 0.94349 0.91969 0.90979 0.93537 0.83256 0.80154 0.81851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 11.01 113.37 1.25 2.01 16 2 O -0.40 -14.76 9.57 -148.98 -1.43 -16.18 16 3 C 0.05 2.15 6.28 71.98 0.45 2.60 16 4 C 0.16 7.56 5.59 86.38 0.48 8.04 16 5 N -0.57 -26.31 1.82 -678.01 -1.23 -27.54 16 6 C -0.24 -11.99 8.26 84.03 0.69 -11.29 16 7 H 0.05 2.58 6.83 -2.91 -0.02 2.56 16 8 C -0.03 -1.39 4.80 84.86 0.41 -0.98 16 9 N -0.90 -46.83 8.84 21.65 0.19 -46.64 16 10 Si 0.94 42.86 29.60 68.60 2.03 44.89 16 11 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 12 H -0.30 -13.88 7.11 99.48 0.71 -13.17 16 13 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 14 C 0.18 7.40 2.17 44.99 0.10 7.50 16 15 H 0.05 2.07 7.39 -2.38 -0.02 2.05 16 16 C -0.14 -4.95 8.94 71.98 0.64 -4.31 16 17 C -0.06 -2.27 4.93 29.85 0.15 -2.12 16 18 C -0.12 -5.00 4.84 -20.92 -0.10 -5.10 16 19 C -0.13 -4.42 9.98 21.21 0.21 -4.21 16 20 C -0.23 -7.46 11.23 66.72 0.75 -6.71 16 21 S 0.04 1.33 23.34 -56.49 -1.32 0.01 16 22 C -0.15 -6.67 10.23 66.72 0.68 -5.99 16 23 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 25 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 26 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.01 0.65 8.08 -2.39 -0.02 0.63 16 29 H 0.08 4.18 5.52 -2.38 -0.01 4.17 16 30 H 0.25 12.91 8.31 -92.71 -0.77 12.14 16 31 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.04 1.45 7.14 -2.39 -0.02 1.43 16 33 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 2.38 8.13 -2.39 -0.02 2.36 16 35 H 0.05 2.02 7.60 -2.39 -0.02 2.01 16 36 H 0.15 4.26 8.06 -2.91 -0.02 4.24 16 37 H 0.18 4.48 8.06 -2.91 -0.02 4.46 16 38 H 0.16 8.37 5.67 -2.91 -0.02 8.35 16 Total: -1.00 -54.43 320.53 4.99 -49.44 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: 1.03 Total: 16.59 kcal Atomic # 6 Polarization: -26.28 SS G_CDS: 5.72 Total: -20.56 kcal Atomic # 7 Polarization: -73.14 SS G_CDS: -1.04 Total: -74.18 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: -1.43 Total: -16.18 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -1.32 Total: 0.01 kcal Total: -54.43 4.99 -49.44 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580399276.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.427 kcal (2) G-P(sol) polarization free energy of solvation -54.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds