Wall clock time and date at job start Mon Mar 30 2020 00:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47434 * 2 1 4 4 C 1.50705 * 109.47032 * 240.00642 * 2 1 3 5 5 H 1.07998 * 119.99808 * 240.00663 * 4 2 1 6 6 C 1.37875 * 119.99992 * 59.99568 * 4 2 1 7 7 N 1.31510 * 120.00190 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00011 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46807 * 60.00172 * 8 6 4 10 10 H 1.48504 * 109.46973 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47150 * 300.00349 * 8 6 4 12 12 N 1.46498 * 109.47342 * 120.00845 * 2 1 3 13 13 C 1.46494 * 120.00275 * 59.99655 * 12 2 1 14 14 C 1.34782 * 119.99565 * 239.99874 * 12 2 1 15 15 O 1.21278 * 120.00519 * 359.97438 * 14 12 2 16 16 C 1.50704 * 119.99419 * 179.97438 * 14 12 2 17 17 H 1.08996 * 109.46365 * 40.01847 * 16 14 12 18 18 C 1.53364 * 109.64659 * 280.03133 * 16 14 12 19 19 C 1.50807 * 109.00705 * 286.96170 * 18 16 14 20 20 O 1.21233 * 120.01980 * 145.62560 * 19 18 16 21 21 N 1.34569 * 119.96446 * 325.34354 * 19 18 16 22 22 C 1.34340 * 120.98500 * 4.74067 * 21 19 18 23 23 O 1.21539 * 119.20583 * 191.96939 * 22 21 19 24 24 N 1.34286 * 121.58666 * 11.99506 * 22 21 19 25 25 H 1.08999 * 109.46472 * 299.99530 * 1 2 3 26 26 H 1.08997 * 109.47010 * 59.99313 * 1 2 3 27 27 H 1.08996 * 109.46928 * 179.97438 * 1 2 3 28 28 H 0.97001 * 120.00641 * 179.97438 * 7 6 4 29 29 H 1.09008 * 109.47003 * 270.00248 * 13 12 2 30 30 H 1.09001 * 109.47470 * 29.99641 * 13 12 2 31 31 H 1.08999 * 109.47697 * 150.00216 * 13 12 2 32 32 H 1.08997 * 109.71839 * 167.03263 * 18 16 14 33 33 H 1.08996 * 109.49190 * 46.74596 * 18 16 14 34 34 H 0.96998 * 119.50582 * 184.71384 * 21 19 18 35 35 H 0.97001 * 119.53930 * 185.66535 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1200 -4.0082 9 1 1.8257 -2.5199 -4.0080 10 1 1.8267 -0.4194 -5.2206 11 1 3.8062 -1.1206 -4.0084 12 7 2.0184 -0.6908 1.1960 13 6 1.6645 -2.0933 1.4278 14 6 2.7933 -0.0358 2.0832 15 8 3.0867 1.1252 1.8912 16 6 3.2952 -0.7462 3.3139 17 1 3.5846 -1.7642 3.0530 18 6 2.1870 -0.7880 4.3732 19 6 2.0171 0.5905 4.9608 20 8 0.9178 0.9749 5.2978 21 7 3.0872 1.3915 5.1161 22 6 4.2987 1.0216 4.6688 23 8 5.2768 1.6559 5.0125 24 7 4.4550 -0.0318 3.8507 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7093 1.1621 -3.4843 29 1 0.7376 -2.1445 1.9992 30 1 1.5294 -2.5969 0.4706 31 1 2.4629 -2.5821 1.9860 32 1 2.4586 -1.4893 5.1622 33 1 1.2525 -1.1039 3.9097 34 1 2.9821 2.2490 5.5572 35 1 5.3488 -0.3233 3.6118 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590440497.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:06 Heat of formation + Delta-G solvation = -88.891796 kcal Electronic energy + Delta-G solvation = -21529.306398 eV Core-core repulsion = 18142.063164 eV Total energy + Delta-G solvation = -3387.243234 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.78744 -39.23076 -38.81008 -36.00687 -35.34024 -34.26587 -33.00617 -31.06900 -29.40511 -26.44596 -25.68552 -25.28373 -23.48844 -21.74501 -20.19063 -18.84898 -18.14982 -17.42302 -17.19916 -16.57726 -16.09534 -15.94652 -15.36472 -15.01593 -14.68101 -14.46256 -14.23574 -13.64957 -13.19552 -12.96308 -12.65350 -12.37943 -12.18471 -11.74533 -11.61908 -11.14090 -10.93851 -10.84475 -10.71619 -10.37934 -10.34397 -10.25463 -10.21289 -10.05459 -9.29195 -8.87206 -8.50918 -7.80416 -6.15564 -4.24965 1.69369 2.44541 2.95613 2.99355 3.21943 3.24187 3.28336 3.28782 3.67568 4.17287 4.31205 4.37778 4.63521 4.81697 4.99887 5.14684 5.16843 5.49659 5.81497 5.84277 6.16064 6.21708 6.65415 6.71335 6.72840 6.94436 7.19190 7.26252 7.39352 7.44592 7.60598 7.89637 8.07557 8.16652 8.31680 8.64940 8.82551 9.41731 10.89724 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028847 B = 0.005438 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.399642 B = 5147.967770 C = 5406.436480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.583 5.583 13 C 0.074 3.926 14 C 0.480 3.520 15 O -0.533 6.533 16 C 0.114 3.886 17 H 0.132 0.868 18 C -0.148 4.148 19 C 0.528 3.472 20 O -0.500 6.500 21 N -0.670 5.670 22 C 0.727 3.273 23 O -0.562 6.562 24 N -0.704 5.704 25 H 0.012 0.988 26 H 0.094 0.906 27 H 0.031 0.969 28 H 0.265 0.735 29 H 0.049 0.951 30 H 0.087 0.913 31 H 0.055 0.945 32 H 0.125 0.875 33 H 0.130 0.870 34 H 0.426 0.574 35 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.346 -8.553 12.357 15.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.523 5.523 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.315 5.315 13 C -0.070 4.070 14 C 0.263 3.737 15 O -0.410 6.410 16 C 0.004 3.996 17 H 0.149 0.851 18 C -0.189 4.189 19 C 0.315 3.685 20 O -0.372 6.372 21 N -0.339 5.339 22 C 0.427 3.573 23 O -0.438 6.438 24 N -0.362 5.362 25 H 0.031 0.969 26 H 0.112 0.888 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.067 0.933 30 H 0.105 0.895 31 H 0.074 0.926 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.267 0.733 35 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 2.166 -7.392 12.396 14.594 hybrid contribution 0.516 -0.373 -1.003 1.188 sum 2.682 -7.765 11.393 14.046 Atomic orbital electron populations 1.22087 0.97911 0.99538 1.00994 1.19002 0.91036 0.94505 0.79612 0.91917 1.21229 1.32286 1.13202 0.90189 0.92188 1.24899 0.94834 0.94938 0.99037 1.69863 1.35984 1.22414 1.24068 0.86532 0.79219 0.79544 0.81948 1.20166 1.21125 1.20237 1.48297 1.48216 1.11668 1.23300 1.21780 0.98890 0.83132 1.03155 1.20632 0.80536 0.87789 0.84703 1.90725 1.57500 1.16566 1.76176 1.21331 0.86989 0.98379 0.92874 0.85051 1.22276 1.02056 0.94926 0.99619 1.20759 0.83663 0.87377 0.76670 1.90788 1.24254 1.75003 1.47108 1.44107 1.08655 1.23496 1.57627 1.15490 0.82863 0.80410 0.78538 1.91011 1.37170 1.53783 1.61786 1.44725 1.09962 1.32380 1.49145 0.96919 0.88755 0.94989 0.92480 0.93261 0.89461 0.92625 0.85740 0.85171 0.73319 0.73441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.36 8.97 37.16 0.33 -3.03 16 2 C 0.26 6.22 2.64 -69.08 -0.18 6.03 16 3 H 0.06 1.80 6.90 -51.93 -0.36 1.44 16 4 C -0.53 -13.52 7.99 -34.44 -0.28 -13.80 16 5 H 0.06 1.47 7.33 -52.49 -0.38 1.09 16 6 C 0.07 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.45 11.32 55.43 0.63 -23.82 16 8 Si 0.90 20.25 29.54 -169.99 -5.02 15.23 16 9 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 12 N -0.58 -10.91 2.75 -175.26 -0.48 -11.39 16 13 C 0.07 0.99 8.60 59.84 0.51 1.50 16 14 C 0.48 8.66 6.58 -10.98 -0.07 8.59 16 15 O -0.53 -12.27 15.48 5.56 0.09 -12.18 16 16 C 0.11 1.31 2.90 -68.94 -0.20 1.11 16 17 H 0.13 0.99 6.31 -51.93 -0.33 0.66 16 18 C -0.15 -1.47 5.64 -27.64 -0.16 -1.63 16 19 C 0.53 7.28 7.43 -11.03 -0.08 7.20 16 20 O -0.50 -8.34 17.93 5.60 0.10 -8.24 16 21 N -0.67 -9.21 5.18 -16.02 -0.08 -9.30 16 22 C 0.73 10.70 7.98 -87.75 -0.70 10.00 16 23 O -0.56 -9.86 17.97 5.33 0.10 -9.76 16 24 N -0.70 -8.60 4.90 -59.94 -0.29 -8.89 16 25 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 27 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 28 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.05 0.56 7.70 -51.92 -0.40 0.16 16 30 H 0.09 1.30 7.02 -51.93 -0.36 0.94 16 31 H 0.06 0.50 5.94 -51.93 -0.31 0.20 16 32 H 0.12 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.13 1.25 7.00 -51.93 -0.36 0.89 16 34 H 0.43 5.38 8.86 -40.82 -0.36 5.02 16 35 H 0.43 4.36 8.90 -40.82 -0.36 4.00 16 LS Contribution 294.71 15.07 4.44 4.44 Total: -1.00 -34.89 294.71 -5.37 -40.26 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -3.93 Total: 6.03 kcal Atomic # 6 Polarization: 18.54 SS G_CDS: -0.91 Total: 17.62 kcal Atomic # 7 Polarization: -53.17 SS G_CDS: -0.23 Total: -53.41 kcal Atomic # 8 Polarization: -30.46 SS G_CDS: 0.28 Total: -30.18 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -5.02 Total: 15.23 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -34.89 -5.37 -40.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590440497.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.633 kcal (2) G-P(sol) polarization free energy of solvation -34.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds