Wall clock time and date at job start Mon Mar 30 2020 00:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.47434 * 2 1 4 4 C 1.50705 * 109.47032 * 240.00642 * 2 1 3 5 5 H 1.07998 * 119.99808 * 240.00663 * 4 2 1 6 6 C 1.37875 * 119.99992 * 59.99568 * 4 2 1 7 7 N 1.31510 * 120.00190 * 0.02562 * 6 4 2 8 8 Si 1.86806 * 120.00011 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46807 * 60.00172 * 8 6 4 10 10 H 1.48504 * 109.46973 * 180.02562 * 8 6 4 11 11 H 1.48496 * 109.47150 * 300.00349 * 8 6 4 12 12 N 1.46498 * 109.47342 * 120.00845 * 2 1 3 13 13 C 1.46494 * 120.00275 * 59.99655 * 12 2 1 14 14 C 1.34782 * 119.99565 * 239.99874 * 12 2 1 15 15 O 1.21278 * 120.00519 * 359.97438 * 14 12 2 16 16 C 1.50704 * 119.99419 * 179.97438 * 14 12 2 17 17 H 1.08996 * 109.46365 * 40.01847 * 16 14 12 18 18 C 1.53364 * 109.64659 * 280.03133 * 16 14 12 19 19 C 1.50807 * 109.00705 * 286.96170 * 18 16 14 20 20 O 1.21233 * 120.01980 * 145.62560 * 19 18 16 21 21 N 1.34569 * 119.96446 * 325.34354 * 19 18 16 22 22 C 1.34340 * 120.98500 * 4.74067 * 21 19 18 23 23 O 1.21539 * 119.20583 * 191.96939 * 22 21 19 24 24 N 1.34286 * 121.58666 * 11.99506 * 22 21 19 25 25 H 1.08999 * 109.46472 * 299.99530 * 1 2 3 26 26 H 1.08997 * 109.47010 * 59.99313 * 1 2 3 27 27 H 1.08996 * 109.46928 * 179.97438 * 1 2 3 28 28 H 0.97001 * 120.00641 * 179.97438 * 7 6 4 29 29 H 1.09008 * 109.47003 * 270.00248 * 13 12 2 30 30 H 1.09001 * 109.47470 * 29.99641 * 13 12 2 31 31 H 1.08999 * 109.47697 * 150.00216 * 13 12 2 32 32 H 1.08997 * 109.71839 * 167.03263 * 18 16 14 33 33 H 1.08996 * 109.49190 * 46.74596 * 18 16 14 34 34 H 0.96998 * 119.50582 * 184.71384 * 21 19 18 35 35 H 0.97001 * 119.53930 * 185.66535 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.6531 -1.5885 -1.1316 6 6 1.6992 -0.2392 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1200 -4.0082 9 1 1.8257 -2.5199 -4.0080 10 1 1.8267 -0.4194 -5.2206 11 1 3.8062 -1.1206 -4.0084 12 7 2.0184 -0.6908 1.1960 13 6 1.6645 -2.0933 1.4278 14 6 2.7933 -0.0358 2.0832 15 8 3.0867 1.1252 1.8912 16 6 3.2952 -0.7462 3.3139 17 1 3.5846 -1.7642 3.0530 18 6 2.1870 -0.7880 4.3732 19 6 2.0171 0.5905 4.9608 20 8 0.9178 0.9749 5.2978 21 7 3.0872 1.3915 5.1161 22 6 4.2987 1.0216 4.6688 23 8 5.2768 1.6559 5.0125 24 7 4.4550 -0.0318 3.8507 25 1 -0.3632 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7093 1.1621 -3.4843 29 1 0.7376 -2.1445 1.9992 30 1 1.5294 -2.5969 0.4706 31 1 2.4629 -2.5821 1.9860 32 1 2.4586 -1.4893 5.1622 33 1 1.2525 -1.1039 3.9097 34 1 2.9821 2.2490 5.5572 35 1 5.3488 -0.3233 3.6118 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590440497.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:41:06 Heat of formation + Delta-G solvation = -118.672045 kcal Electronic energy + Delta-G solvation = -21530.597767 eV Core-core repulsion = 18142.063164 eV Total energy + Delta-G solvation = -3388.534602 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.88611 -40.62762 -39.96878 -37.40125 -36.74958 -35.40621 -34.76473 -32.27957 -30.98048 -27.61848 -27.30377 -26.79444 -24.59116 -23.29249 -21.38776 -20.19381 -19.23263 -18.71735 -18.35838 -18.30344 -17.34255 -17.23057 -16.85677 -16.25248 -16.19078 -15.66675 -15.46675 -15.04978 -14.55704 -14.29051 -14.05053 -13.55454 -13.36622 -13.25215 -13.00709 -12.77267 -12.71456 -12.63930 -12.18038 -12.11803 -11.90808 -11.51160 -11.38455 -11.30299 -11.15976 -10.53502 -10.13549 -9.33773 -8.13556 -6.30492 0.60848 1.37809 1.44084 1.46052 1.53152 1.68500 1.90536 2.19957 2.34798 2.51153 3.15354 3.25530 3.39855 3.56281 4.00322 4.18675 4.46976 4.57620 4.77052 4.82954 4.85376 4.90470 5.07618 5.12317 5.22412 5.49364 5.57524 5.67273 5.76250 6.02404 6.16596 6.17271 6.39096 6.78105 6.79071 7.08710 7.28961 7.45059 8.90646 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028847 B = 0.005438 C = 0.005178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 970.399642 B = 5147.967770 C = 5406.436480 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.262 3.738 3 H 0.002 0.998 4 C -0.535 4.535 5 H 0.071 0.929 6 C 0.012 3.988 7 N -0.922 5.922 8 Si 0.965 3.035 9 H -0.258 1.258 10 H -0.290 1.290 11 H -0.277 1.277 12 N -0.589 5.589 13 C 0.063 3.937 14 C 0.466 3.534 15 O -0.597 6.597 16 C 0.130 3.870 17 H 0.191 0.809 18 C -0.140 4.140 19 C 0.520 3.480 20 O -0.537 6.537 21 N -0.673 5.673 22 C 0.725 3.275 23 O -0.597 6.597 24 N -0.692 5.692 25 H 0.014 0.986 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.263 0.737 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.110 0.890 32 H 0.183 0.817 33 H 0.141 0.859 34 H 0.425 0.575 35 H 0.436 0.564 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.902 -12.306 13.251 18.315 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.160 3.840 3 H 0.020 0.980 4 C -0.573 4.573 5 H 0.089 0.911 6 C -0.188 4.188 7 N -0.561 5.561 8 Si 0.790 3.210 9 H -0.182 1.182 10 H -0.216 1.216 11 H -0.202 1.202 12 N -0.319 5.319 13 C -0.078 4.078 14 C 0.253 3.747 15 O -0.478 6.478 16 C 0.022 3.978 17 H 0.208 0.792 18 C -0.180 4.180 19 C 0.309 3.691 20 O -0.412 6.412 21 N -0.340 5.340 22 C 0.425 3.575 23 O -0.475 6.475 24 N -0.350 5.350 25 H 0.033 0.967 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.128 0.872 32 H 0.200 0.800 33 H 0.159 0.841 34 H 0.265 0.735 35 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 2.727 -11.228 13.304 17.621 hybrid contribution 0.332 0.848 -1.261 1.555 sum 3.058 -10.380 12.044 16.191 Atomic orbital electron populations 1.21867 0.97317 1.00349 0.99554 1.18491 0.91431 0.92079 0.82040 0.98039 1.21575 1.31782 1.13175 0.90771 0.91134 1.25777 0.95119 0.95612 1.02268 1.70035 1.37518 1.24091 1.24410 0.85508 0.78376 0.79105 0.78012 1.18244 1.21629 1.20219 1.48235 1.48144 1.13769 1.21774 1.22181 1.02279 0.79754 1.03623 1.21880 0.79360 0.87351 0.86151 1.90705 1.59566 1.19658 1.77879 1.21493 0.86995 0.99480 0.89864 0.79202 1.22506 1.01966 0.93175 1.00364 1.21624 0.82836 0.88740 0.75866 1.90776 1.25429 1.76005 1.48944 1.44193 1.08734 1.23759 1.57361 1.15665 0.82495 0.80624 0.78690 1.90986 1.38285 1.55008 1.63196 1.44713 1.10983 1.31495 1.47838 0.96660 0.91899 0.92802 0.92820 0.90748 0.91047 0.87167 0.79990 0.84060 0.73452 0.72229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.13 8.97 71.98 0.65 -5.48 16 2 C 0.26 12.81 2.64 44.25 0.12 12.92 16 3 H 0.00 0.10 6.90 -2.39 -0.02 0.08 16 4 C -0.53 -27.17 7.99 25.60 0.20 -26.97 16 5 H 0.07 3.35 7.33 -2.91 -0.02 3.33 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -52.52 11.32 21.45 0.24 -52.28 16 8 Si 0.96 41.35 29.54 68.60 2.03 43.38 16 9 H -0.26 -10.24 7.11 99.48 0.71 -9.53 16 10 H -0.29 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 12 N -0.59 -20.94 2.75 -826.79 -2.28 -23.21 16 13 C 0.06 1.39 8.60 127.77 1.10 2.49 16 14 C 0.47 16.06 6.58 87.66 0.58 16.63 16 15 O -0.60 -28.13 15.48 -3.02 -0.05 -28.18 16 16 C 0.13 2.42 2.90 44.38 0.13 2.54 16 17 H 0.19 1.38 6.31 -2.39 -0.02 1.36 16 18 C -0.14 -2.10 5.64 30.00 0.17 -1.93 16 19 C 0.52 13.39 7.43 87.72 0.65 14.04 16 20 O -0.54 -17.54 17.93 -2.88 -0.05 -17.59 16 21 N -0.67 -18.11 5.18 -441.64 -2.29 -20.40 16 22 C 0.72 20.56 7.98 179.34 1.43 21.99 16 23 O -0.60 -20.84 17.97 -3.84 -0.07 -20.91 16 24 N -0.69 -14.92 4.90 -462.11 -2.27 -17.19 16 25 H 0.01 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.06 3.32 6.07 -2.39 -0.01 3.31 16 27 H 0.05 2.19 7.67 -2.39 -0.02 2.17 16 28 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.07 1.30 7.70 -2.38 -0.02 1.29 16 30 H 0.07 1.85 7.02 -2.39 -0.02 1.84 16 31 H 0.11 1.19 5.94 -2.39 -0.01 1.18 16 32 H 0.18 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.14 1.95 7.00 -2.39 -0.02 1.94 16 34 H 0.42 11.03 8.86 -92.71 -0.82 10.21 16 35 H 0.44 7.59 8.90 -92.71 -0.83 6.76 16 Total: -1.00 -83.37 294.71 0.26 -83.11 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: -0.49 Total: 15.97 kcal Atomic # 6 Polarization: 31.83 SS G_CDS: 5.47 Total: 37.30 kcal Atomic # 7 Polarization: -106.49 SS G_CDS: -6.59 Total: -113.08 kcal Atomic # 8 Polarization: -66.52 SS G_CDS: -0.17 Total: -66.68 kcal Atomic # 14 Polarization: 41.35 SS G_CDS: 2.03 Total: 43.38 kcal Total: -83.37 0.26 -83.11 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590440497.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.560 kcal (2) G-P(sol) polarization free energy of solvation -83.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds