Wall clock time and date at job start Mon Mar 30 2020 00:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99891 * 2 1 4 4 C 1.50697 * 109.46882 * 179.97438 * 3 2 1 5 5 C 1.33383 * 122.54277 * 269.97170 * 4 3 2 6 6 S 1.75886 * 109.59550 * 179.77725 * 5 4 3 7 7 C 1.75890 * 90.96871 * 0.32069 * 6 5 4 8 8 C 1.50697 * 125.19997 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.46943 * 269.68961 * 8 7 6 10 10 C 1.46905 * 110.99870 * 180.02562 * 9 8 7 11 11 C 1.52993 * 109.47039 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.47360 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47387 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00144 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99821 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00108 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99834 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47164 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46812 * 120.00223 * 17 15 13 20 20 H 1.48494 * 109.47320 * 240.00038 * 17 15 13 21 21 C 1.33391 * 109.59223 * 359.68091 * 7 6 5 22 22 H 1.09009 * 109.46920 * 300.00513 * 1 2 3 23 23 H 1.09001 * 109.46817 * 59.99647 * 1 2 3 24 24 H 1.09000 * 109.47049 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47565 * 60.00035 * 3 2 1 26 26 H 1.09001 * 109.47000 * 300.00195 * 3 2 1 27 27 H 1.08005 * 125.20377 * 0.06833 * 5 4 3 28 28 H 1.09004 * 109.46763 * 149.69403 * 8 7 6 29 29 H 1.08995 * 109.47483 * 29.69059 * 8 7 6 30 30 H 1.00901 * 111.00067 * 303.95401 * 9 8 7 31 31 H 1.09001 * 109.46798 * 300.00327 * 10 9 8 32 32 H 1.08998 * 109.46961 * 60.00043 * 10 9 8 33 33 H 1.09001 * 109.47393 * 299.99719 * 11 10 9 34 34 H 1.08998 * 109.47408 * 60.00073 * 11 10 9 35 35 H 1.09001 * 109.46514 * 300.00105 * 12 11 10 36 36 H 1.08998 * 109.46924 * 59.99625 * 12 11 10 37 37 H 0.97004 * 119.99990 * 179.97438 * 16 15 13 38 38 H 1.07995 * 122.53494 * 180.26458 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2274 1.1305 1.1253 6 16 5.9358 0.9885 0.7320 7 6 5.5731 1.0235 -0.9888 8 6 6.5946 0.9415 -2.0936 9 7 7.0361 2.2956 -2.4538 10 6 8.0342 2.2547 -3.5310 11 6 8.4693 3.6800 -3.8773 12 6 9.5084 3.6376 -4.9996 13 6 9.9364 5.0416 -5.3412 14 1 9.5104 5.8802 -4.8106 15 6 10.8728 5.2553 -6.3304 16 7 11.3920 4.2341 -6.9761 17 14 11.4029 6.9957 -6.7543 18 1 10.6754 7.9592 -5.8898 19 1 12.8643 7.1363 -6.5306 20 1 11.0912 7.2749 -8.1790 21 6 4.2552 1.1274 -1.1661 22 1 -0.3633 0.5140 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6887 1.8464 0.8899 26 1 1.6886 1.8464 -0.8900 27 1 3.8192 1.1625 2.1248 28 1 6.1497 0.4607 -2.9648 29 1 7.4508 0.3585 -1.7544 30 1 6.2513 2.8755 -2.7103 31 1 8.9004 1.6806 -3.2021 32 1 7.5989 1.7831 -4.4120 33 1 7.6033 4.2546 -4.2061 34 1 8.9047 4.1513 -2.9962 35 1 10.3744 3.0630 -4.6713 36 1 9.0725 3.1665 -5.8806 37 1 12.0505 4.3845 -7.6723 38 1 3.8019 1.1625 -2.1457 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594929138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:53 Heat of formation + Delta-G solvation = -28.980811 kcal Electronic energy + Delta-G solvation = -17070.285851 eV Core-core repulsion = 14231.933767 eV Total energy + Delta-G solvation = -2838.352084 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.08350 -37.50154 -36.22835 -33.65644 -31.89631 -30.13720 -28.04352 -26.68164 -25.95713 -24.75240 -22.30115 -21.50343 -20.10603 -19.14864 -17.48514 -16.71834 -16.31021 -16.04219 -15.62125 -15.40407 -14.69314 -14.49567 -14.27093 -13.79277 -13.25235 -12.94305 -12.81052 -12.61718 -12.26193 -12.15346 -11.80334 -11.57961 -11.47762 -11.33658 -10.86742 -10.76629 -10.57263 -10.47467 -10.03396 -9.68907 -9.37490 -9.05271 -8.79323 -8.51166 -8.33206 -8.19873 -5.98084 -3.99988 0.84766 1.53424 1.91380 2.39103 3.32562 3.39867 3.44577 3.74411 4.40176 4.50006 4.69097 4.72713 4.90800 4.97051 5.03079 5.08864 5.11774 5.30642 5.35512 5.37841 5.44667 5.59734 5.77207 5.88034 6.01727 6.20593 6.31166 6.33187 6.71694 6.74616 6.79103 7.14460 7.27830 7.57890 7.70568 7.85094 8.02491 8.45826 9.07465 9.63989 11.13413 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034063 B = 0.002584 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.798708 B =10832.887396 C =11130.672605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.386 6.386 3 C 0.123 3.877 4 C -0.106 4.106 5 C -0.203 4.203 6 S 0.132 5.868 7 C -0.163 4.163 8 C 0.125 3.875 9 N -0.686 5.686 10 C 0.059 3.941 11 C -0.106 4.106 12 C 0.021 3.979 13 C -0.517 4.517 14 H 0.056 0.944 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.127 4.127 22 H 0.041 0.959 23 H 0.042 0.958 24 H 0.086 0.914 25 H 0.057 0.943 26 H 0.059 0.941 27 H 0.162 0.838 28 H 0.048 0.952 29 H 0.082 0.918 30 H 0.340 0.660 31 H 0.068 0.932 32 H 0.026 0.974 33 H 0.045 0.955 34 H 0.056 0.944 35 H 0.016 0.984 36 H 0.014 0.986 37 H 0.259 0.741 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.784 -8.977 15.839 26.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.044 3.956 4 C -0.119 4.119 5 C -0.339 4.339 6 S 0.398 5.602 7 C -0.281 4.281 8 C -0.005 4.005 9 N -0.317 5.317 10 C -0.070 4.070 11 C -0.144 4.144 12 C -0.016 4.016 13 C -0.556 4.556 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.536 5.536 17 Si 0.720 3.280 18 H -0.197 1.197 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.158 4.158 22 H 0.059 0.941 23 H 0.060 0.940 24 H 0.104 0.896 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.180 0.820 28 H 0.066 0.934 29 H 0.100 0.900 30 H 0.158 0.842 31 H 0.087 0.913 32 H 0.045 0.955 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.069 0.931 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -17.699 -9.274 17.066 26.278 hybrid contribution -1.740 1.042 -1.873 2.761 sum -19.439 -8.232 15.193 26.010 Atomic orbital electron populations 1.22760 0.81042 1.02835 1.00008 1.87982 1.19504 1.27623 1.95400 1.21020 0.88846 0.84886 1.00850 1.18485 0.95113 1.05841 0.92457 1.25542 0.96855 1.09362 1.02185 1.84349 1.05042 1.70840 1.00000 1.24423 0.97415 1.08536 0.97692 1.20382 0.94904 0.92211 0.93032 1.60627 1.17180 1.09997 1.43938 1.22165 0.94246 1.00080 0.90484 1.21621 0.99735 0.92797 1.00292 1.19076 0.93118 0.97115 0.92312 1.21294 1.22854 0.92819 1.18617 0.92607 1.25038 0.96379 0.96915 0.96281 1.69977 1.29416 1.29908 1.24317 0.86537 0.78398 0.84939 0.78142 1.19726 1.21020 1.21060 1.19907 0.92389 1.04240 0.99218 0.94087 0.93956 0.89573 0.92484 0.92239 0.82016 0.93378 0.89985 0.84187 0.91318 0.95540 0.93619 0.92489 0.96541 0.96785 0.93102 0.84499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.92 10.69 -35.23 -0.38 -4.29 16 3 C 0.12 1.10 6.19 36.00 0.22 1.32 16 4 C -0.11 -1.14 5.43 -106.25 -0.58 -1.72 16 5 C -0.20 -2.08 10.98 29.04 0.32 -1.76 16 6 S 0.13 1.47 23.33 -107.50 -2.51 -1.03 16 7 C -0.16 -1.97 6.02 -36.00 -0.22 -2.19 16 8 C 0.13 1.60 6.18 -4.98 -0.03 1.57 16 9 N -0.69 -10.21 6.49 -115.06 -0.75 -10.96 16 10 C 0.06 1.01 5.68 -3.82 -0.02 0.99 16 11 C -0.11 -2.23 5.41 -26.73 -0.14 -2.37 16 12 C 0.02 0.56 4.97 -27.88 -0.14 0.42 16 13 C -0.52 -14.90 9.11 -34.44 -0.31 -15.21 16 14 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 15 C 0.05 1.59 5.46 -17.82 -0.10 1.49 16 16 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 17 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 18 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 19 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 21 C -0.13 -1.45 9.85 -41.21 -0.41 -1.86 16 22 H 0.04 0.21 8.14 -51.92 -0.42 -0.21 16 23 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 24 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 25 H 0.06 0.42 8.12 -51.93 -0.42 0.00 16 26 H 0.06 0.47 8.13 -51.93 -0.42 0.05 16 27 H 0.16 1.29 8.06 -52.48 -0.42 0.87 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.34 4.82 8.72 -39.29 -0.34 4.48 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 32 H 0.03 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 38 H 0.14 1.42 8.06 -52.49 -0.42 1.00 16 LS Contribution 337.64 15.07 5.09 5.09 Total: -1.00 -31.50 337.64 -9.34 -40.84 By element: Atomic # 1 Polarization: 4.21 SS G_CDS: -6.22 Total: -2.01 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -0.29 Total: -18.00 kcal Atomic # 7 Polarization: -37.48 SS G_CDS: -0.01 Total: -37.49 kcal Atomic # 8 Polarization: -3.92 SS G_CDS: -0.38 Total: -4.29 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.51 Total: -1.03 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.50 -9.34 -40.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594929138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.861 kcal (2) G-P(sol) polarization free energy of solvation -31.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds