Wall clock time and date at job start Mon Mar 30 2020 00:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.42901 * 113.99891 * 2 1 4 4 C 1.50697 * 109.46882 * 179.97438 * 3 2 1 5 5 C 1.33383 * 122.54277 * 269.97170 * 4 3 2 6 6 S 1.75886 * 109.59550 * 179.77725 * 5 4 3 7 7 C 1.75890 * 90.96871 * 0.32069 * 6 5 4 8 8 C 1.50697 * 125.19997 * 179.97438 * 7 6 5 9 9 N 1.46901 * 109.46943 * 269.68961 * 8 7 6 10 10 C 1.46905 * 110.99870 * 180.02562 * 9 8 7 11 11 C 1.52993 * 109.47039 * 180.02562 * 10 9 8 12 12 C 1.53004 * 109.47360 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47387 * 179.97438 * 12 11 10 14 14 H 1.08000 * 120.00144 * 0.02562 * 13 12 11 15 15 C 1.37874 * 119.99821 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00108 * 0.02562 * 15 13 12 17 17 Si 1.86806 * 119.99834 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.47164 * 0.02562 * 17 15 13 19 19 H 1.48507 * 109.46812 * 120.00223 * 17 15 13 20 20 H 1.48494 * 109.47320 * 240.00038 * 17 15 13 21 21 C 1.33391 * 109.59223 * 359.68091 * 7 6 5 22 22 H 1.09009 * 109.46920 * 300.00513 * 1 2 3 23 23 H 1.09001 * 109.46817 * 59.99647 * 1 2 3 24 24 H 1.09000 * 109.47049 * 180.02562 * 1 2 3 25 25 H 1.08996 * 109.47565 * 60.00035 * 3 2 1 26 26 H 1.09001 * 109.47000 * 300.00195 * 3 2 1 27 27 H 1.08005 * 125.20377 * 0.06833 * 5 4 3 28 28 H 1.09004 * 109.46763 * 149.69403 * 8 7 6 29 29 H 1.08995 * 109.47483 * 29.69059 * 8 7 6 30 30 H 1.00901 * 111.00067 * 303.95401 * 9 8 7 31 31 H 1.09001 * 109.46798 * 300.00327 * 10 9 8 32 32 H 1.08998 * 109.46961 * 60.00043 * 10 9 8 33 33 H 1.09001 * 109.47393 * 299.99719 * 11 10 9 34 34 H 1.08998 * 109.47408 * 60.00073 * 11 10 9 35 35 H 1.09001 * 109.46514 * 300.00105 * 12 11 10 36 36 H 1.08998 * 109.46924 * 59.99625 * 12 11 10 37 37 H 0.97004 * 119.99990 * 179.97438 * 16 15 13 38 38 H 1.07995 * 122.53494 * 180.26458 * 21 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5125 1.1864 0.0006 5 6 4.2274 1.1305 1.1253 6 16 5.9358 0.9885 0.7320 7 6 5.5731 1.0235 -0.9888 8 6 6.5946 0.9415 -2.0936 9 7 7.0361 2.2956 -2.4538 10 6 8.0342 2.2547 -3.5310 11 6 8.4693 3.6800 -3.8773 12 6 9.5084 3.6376 -4.9996 13 6 9.9364 5.0416 -5.3412 14 1 9.5104 5.8802 -4.8106 15 6 10.8728 5.2553 -6.3304 16 7 11.3920 4.2341 -6.9761 17 14 11.4029 6.9957 -6.7543 18 1 10.6754 7.9592 -5.8898 19 1 12.8643 7.1363 -6.5306 20 1 11.0912 7.2749 -8.1790 21 6 4.2552 1.1274 -1.1661 22 1 -0.3633 0.5140 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3633 -1.0277 0.0005 25 1 1.6887 1.8464 0.8899 26 1 1.6886 1.8464 -0.8900 27 1 3.8192 1.1625 2.1248 28 1 6.1497 0.4607 -2.9648 29 1 7.4508 0.3585 -1.7544 30 1 6.2513 2.8755 -2.7103 31 1 8.9004 1.6806 -3.2021 32 1 7.5989 1.7831 -4.4120 33 1 7.6033 4.2546 -4.2061 34 1 8.9047 4.1513 -2.9962 35 1 10.3744 3.0630 -4.6713 36 1 9.0725 3.1665 -5.8806 37 1 12.0505 4.3845 -7.6723 38 1 3.8019 1.1625 -2.1457 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594929138.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:56:53 Heat of formation + Delta-G solvation = -48.990727 kcal Electronic energy + Delta-G solvation = -17071.153546 eV Core-core repulsion = 14231.933767 eV Total energy + Delta-G solvation = -2839.219779 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.84994 -38.36091 -37.42973 -35.53230 -33.55489 -31.42347 -28.87497 -28.11366 -26.59057 -26.13957 -23.98846 -22.46822 -21.81276 -19.96803 -18.56000 -18.27088 -17.33654 -16.87823 -16.67277 -16.56151 -16.21664 -15.69410 -15.43194 -15.19519 -14.40463 -14.07305 -13.91341 -13.67397 -13.45225 -13.39463 -13.17857 -12.83875 -12.69266 -12.51606 -12.41611 -12.25593 -12.15870 -11.63583 -11.52030 -11.39868 -11.11859 -10.63483 -10.55819 -9.72799 -9.37847 -9.35059 -8.20262 -6.31078 0.00188 0.69387 1.07468 1.40110 1.40511 1.54131 1.57240 2.41141 3.11002 3.12876 3.31312 3.78238 4.04037 4.12958 4.24541 4.27843 4.34674 4.42018 4.51329 4.54980 4.58353 4.61409 4.70923 4.72581 4.88280 4.97202 5.08976 5.13623 5.24363 5.39558 5.49868 5.52227 5.75181 5.86093 5.96663 6.22122 6.26772 6.40344 6.86052 7.38125 8.91842 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.034063 B = 0.002584 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 821.798708 B =10832.887396 C =11130.672605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.413 6.413 3 C 0.123 3.877 4 C -0.121 4.121 5 C -0.195 4.195 6 S 0.121 5.879 7 C -0.182 4.182 8 C 0.129 3.871 9 N -0.687 5.687 10 C 0.072 3.928 11 C -0.092 4.092 12 C 0.024 3.976 13 C -0.542 4.542 14 H 0.059 0.941 15 C -0.003 4.003 16 N -0.934 5.934 17 Si 0.966 3.034 18 H -0.262 1.262 19 H -0.278 1.278 20 H -0.277 1.277 21 C -0.126 4.126 22 H 0.054 0.946 23 H 0.050 0.950 24 H 0.093 0.907 25 H 0.074 0.926 26 H 0.067 0.933 27 H 0.185 0.815 28 H 0.056 0.944 29 H 0.081 0.919 30 H 0.346 0.654 31 H 0.064 0.936 32 H 0.029 0.971 33 H 0.051 0.949 34 H 0.051 0.949 35 H -0.008 1.008 36 H -0.008 1.008 37 H 0.264 0.736 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.176 -8.147 16.693 28.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.333 6.333 3 C 0.044 3.956 4 C -0.133 4.133 5 C -0.332 4.332 6 S 0.386 5.614 7 C -0.300 4.300 8 C -0.001 4.001 9 N -0.319 5.319 10 C -0.057 4.057 11 C -0.130 4.130 12 C -0.013 4.013 13 C -0.580 4.580 14 H 0.077 0.923 15 C -0.200 4.200 16 N -0.574 5.574 17 Si 0.791 3.209 18 H -0.186 1.186 19 H -0.204 1.204 20 H -0.203 1.203 21 C -0.157 4.157 22 H 0.072 0.928 23 H 0.069 0.931 24 H 0.112 0.888 25 H 0.092 0.908 26 H 0.086 0.914 27 H 0.202 0.798 28 H 0.074 0.926 29 H 0.099 0.901 30 H 0.164 0.836 31 H 0.083 0.917 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.010 0.990 36 H 0.011 0.989 37 H 0.072 0.928 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -19.113 -8.448 17.936 27.538 hybrid contribution -1.370 0.731 -2.103 2.614 sum -20.483 -7.717 15.832 27.014 Atomic orbital electron populations 1.22938 0.79356 1.03771 1.01068 1.87931 1.21436 1.28333 1.95631 1.21082 0.87594 0.84793 1.02096 1.18751 0.96367 1.05955 0.92260 1.25847 0.96009 1.08088 1.03223 1.84360 1.06242 1.71107 0.99654 1.24349 0.97514 1.10277 0.97844 1.20338 0.95226 0.90836 0.93698 1.60530 1.17197 1.11623 1.42557 1.21857 0.94960 0.97420 0.91441 1.21365 0.98289 0.95318 0.98010 1.18981 0.93533 0.95602 0.93214 1.21726 1.23285 0.93967 1.18993 0.92285 1.26005 0.96341 1.01617 0.96081 1.70102 1.30004 1.32421 1.24892 0.85381 0.78082 0.79340 0.78137 1.18633 1.20355 1.20261 1.20118 0.92280 1.03254 1.00015 0.92751 0.93138 0.88806 0.90800 0.91437 0.79808 0.92560 0.90097 0.83597 0.91746 0.95319 0.93055 0.92983 0.98969 0.98927 0.92767 0.83793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.27 11.01 113.37 1.25 1.52 16 2 O -0.41 -7.68 10.69 -148.98 -1.59 -9.27 16 3 C 0.12 1.94 6.19 71.24 0.44 2.39 16 4 C -0.12 -2.39 5.43 -20.92 -0.11 -2.51 16 5 C -0.20 -3.64 10.98 66.72 0.73 -2.91 16 6 S 0.12 2.58 23.33 -56.49 -1.32 1.26 16 7 C -0.18 -4.23 6.02 24.59 0.15 -4.09 16 8 C 0.13 3.19 6.18 85.56 0.53 3.72 16 9 N -0.69 -19.87 6.49 -517.93 -3.36 -23.23 16 10 C 0.07 2.48 5.68 86.30 0.49 2.97 16 11 C -0.09 -3.85 5.41 30.59 0.17 -3.68 16 12 C 0.02 1.31 4.97 29.85 0.15 1.45 16 13 C -0.54 -31.45 9.11 25.60 0.23 -31.22 16 14 H 0.06 3.31 7.74 -2.91 -0.02 3.28 16 15 C 0.00 -0.17 5.46 84.65 0.46 0.29 16 16 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 17 Si 0.97 44.85 29.54 68.60 2.03 46.88 16 18 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 19 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 20 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 21 C -0.13 -2.71 9.85 21.22 0.21 -2.50 16 22 H 0.05 0.44 8.14 -2.38 -0.02 0.42 16 23 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 24 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 25 H 0.07 0.89 8.12 -2.39 -0.02 0.88 16 26 H 0.07 0.93 8.13 -2.39 -0.02 0.91 16 27 H 0.18 2.48 8.06 -2.91 -0.02 2.45 16 28 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 29 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.35 9.40 8.72 -89.69 -0.78 8.61 16 31 H 0.06 2.27 8.14 -2.39 -0.02 2.25 16 32 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 35 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 36 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 37 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 38 H 0.14 2.80 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -66.92 337.64 0.98 -65.94 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: 0.25 Total: 10.24 kcal Atomic # 6 Polarization: -39.27 SS G_CDS: 4.69 Total: -34.57 kcal Atomic # 7 Polarization: -77.40 SS G_CDS: -3.08 Total: -80.47 kcal Atomic # 8 Polarization: -7.68 SS G_CDS: -1.59 Total: -9.27 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.88 kcal Atomic # 16 Polarization: 2.58 SS G_CDS: -1.32 Total: 1.26 kcal Total: -66.92 0.98 -65.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594929138.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.951 kcal (2) G-P(sol) polarization free energy of solvation -66.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.942 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.991 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds