Wall clock time and date at job start Mon Mar 30 2020 00:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46902 * 109.47247 * 2 1 4 4 C 1.46896 * 110.99607 * 299.05803 * 3 2 1 5 5 C 1.50704 * 109.47675 * 293.95310 * 4 3 2 6 6 H 1.07999 * 119.99579 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00372 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99948 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99973 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47340 * 60.00219 * 9 7 5 11 11 H 1.48504 * 109.47146 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47268 * 299.99793 * 9 7 5 13 13 C 1.46900 * 111.00162 * 63.01325 * 3 2 1 14 14 C 1.50696 * 109.47001 * 71.53147 * 13 3 2 15 15 O 1.34041 * 126.77868 * 269.27657 * 14 13 3 16 16 N 1.20925 * 111.56593 * 179.78992 * 15 14 13 17 17 C 1.30176 * 111.60609 * 0.48971 * 16 15 14 18 18 C 1.50694 * 126.80337 * 179.71908 * 17 16 15 19 19 C 1.35445 * 126.77662 * 89.59544 * 14 13 3 20 20 N 1.48021 * 128.00727 * 0.02562 * 19 14 13 21 21 O 1.21807 * 119.99882 * 90.00641 * 20 19 14 22 22 O 1.21802 * 120.00350 * 270.00322 * 20 19 14 23 23 H 1.09008 * 109.47026 * 178.88325 * 1 2 3 24 24 H 1.09000 * 109.47485 * 298.88520 * 1 2 3 25 25 H 1.08998 * 109.46968 * 58.88341 * 1 2 3 26 26 H 1.08997 * 109.47392 * 239.99419 * 2 1 3 27 27 H 1.09006 * 109.47573 * 119.99917 * 2 1 3 28 28 H 1.09001 * 109.47149 * 53.95761 * 4 3 2 29 29 H 1.09001 * 109.47354 * 173.95113 * 4 3 2 30 30 H 0.96998 * 119.99892 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.46830 * 191.53467 * 13 3 2 32 32 H 1.09004 * 109.46896 * 311.53556 * 13 3 2 33 33 H 1.09003 * 109.46918 * 269.98190 * 18 17 16 34 34 H 1.09000 * 109.46947 * 29.97570 * 18 17 16 35 35 H 1.09000 * 109.47320 * 149.98062 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5671 2.1033 -1.1988 5 6 2.2082 1.4963 -2.4202 6 1 2.8840 0.6603 -2.3162 7 6 1.9322 2.0083 -3.6702 8 7 1.1096 3.0268 -3.7967 9 14 2.7263 1.2555 -5.1841 10 1 2.3375 -0.1739 -5.2881 11 1 2.2699 1.9825 -6.3959 12 1 4.2034 1.3599 -5.0719 13 6 1.6084 2.0888 1.2221 14 6 2.3909 1.5574 2.3952 15 8 2.0424 0.5430 3.1991 16 7 2.8764 0.3450 4.0520 17 6 3.8704 1.1798 3.9534 18 6 5.0872 1.2435 4.8402 19 6 3.5824 2.0144 2.8492 20 7 4.3947 3.1299 2.3136 21 8 4.2274 4.2612 2.7329 22 8 5.2305 2.9166 1.4536 23 1 -0.3633 -1.0275 -0.0200 24 1 -0.3634 0.4964 0.8998 25 1 -0.3633 0.5311 -0.8798 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.4830 2.0259 -1.2811 29 1 1.8516 3.1527 -1.1227 30 1 0.9151 3.3867 -4.6762 31 1 1.8018 3.1555 1.1095 32 1 0.5438 1.9285 1.3929 33 1 4.8922 1.9144 5.6768 34 1 5.3133 0.2468 5.2189 35 1 5.9359 1.6155 4.2663 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595334536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:19 Heat of formation + Delta-G solvation = 69.512862 kcal Electronic energy + Delta-G solvation = -21161.195388 eV Core-core repulsion = 17780.821095 eV Total energy + Delta-G solvation = -3380.374292 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -45.61277 -41.88417 -37.79968 -36.40910 -35.41264 -33.37944 -32.46308 -29.78493 -29.30840 -28.25262 -26.85146 -25.14516 -23.35893 -22.71862 -21.19864 -19.85726 -19.14086 -18.79889 -18.04363 -17.27836 -16.69756 -16.17403 -15.45938 -15.15505 -14.42690 -14.25504 -13.82995 -13.68985 -13.28491 -13.16198 -12.48800 -12.20296 -12.01780 -11.64080 -11.61891 -11.32334 -11.21763 -11.18711 -11.01734 -10.84420 -10.71506 -10.68618 -10.27319 -10.12185 -9.88791 -9.38953 -8.52685 -7.62669 -6.11909 -4.13849 0.54195 0.76781 1.13998 1.42115 2.64072 3.30581 3.35074 3.38370 3.59910 3.74812 4.30002 4.34464 4.64300 4.75111 4.87436 5.03463 5.14809 5.24817 5.32574 5.44812 5.51650 5.56585 5.76468 5.90336 6.17723 6.28556 6.45863 6.67062 6.99183 7.15071 7.56930 7.60375 7.65019 7.78238 7.95263 8.29508 8.91434 9.50736 10.98884 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022288 B = 0.005658 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.006437 B = 4947.584928 C = 5563.417258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.055 3.945 3 N -0.526 5.526 4 C 0.192 3.808 5 C -0.509 4.509 6 H 0.064 0.936 7 C 0.059 3.941 8 N -0.897 5.897 9 Si 0.900 3.100 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.103 3.897 14 C 0.094 3.906 15 O 0.114 5.886 16 N -0.343 5.343 17 C 0.072 3.928 18 C -0.085 4.085 19 C -0.153 4.153 20 N 0.056 4.944 21 O -0.140 6.140 22 O -0.097 6.097 23 H 0.054 0.946 24 H 0.044 0.956 25 H 0.074 0.926 26 H 0.092 0.908 27 H 0.049 0.951 28 H 0.008 0.992 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.107 0.893 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.092 0.908 35 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.272 -3.289 14.602 15.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.073 4.073 3 N -0.251 5.251 4 C 0.068 3.932 5 C -0.548 4.548 6 H 0.082 0.918 7 C -0.143 4.143 8 N -0.536 5.536 9 Si 0.728 3.272 10 H -0.203 1.203 11 H -0.213 1.213 12 H -0.200 1.200 13 C -0.026 4.026 14 C 0.027 3.973 15 O 0.058 5.942 16 N -0.053 5.053 17 C -0.090 4.090 18 C -0.142 4.142 19 C -0.241 4.241 20 N 0.589 4.411 21 O -0.359 6.359 22 O -0.328 6.328 23 H 0.073 0.927 24 H 0.063 0.937 25 H 0.093 0.907 26 H 0.111 0.889 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.125 0.875 32 H 0.094 0.906 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 1.895 -4.772 15.582 16.406 hybrid contribution 0.015 0.550 -1.341 1.449 sum 1.909 -4.222 14.241 14.976 Atomic orbital electron populations 1.22389 0.98513 1.01831 1.02123 1.22093 0.92840 0.90355 1.02008 1.62521 1.59268 1.02550 1.00720 1.19888 0.94855 0.93867 0.84582 1.20991 1.27216 1.16688 0.89896 0.91758 1.24948 0.95197 0.95005 0.99130 1.69934 1.35340 1.24231 1.24093 0.86520 0.79929 0.79072 0.81698 1.20267 1.21297 1.19974 1.21021 0.96700 0.98909 0.85964 1.24675 0.92648 0.86783 0.93192 1.84996 1.38063 1.40367 1.30801 1.73997 1.00296 1.20924 1.10071 1.23208 0.98635 0.91706 0.95480 1.20370 0.90983 1.05005 0.97850 1.21410 0.98007 1.00590 1.04043 1.42040 0.99619 1.00252 0.99213 1.94568 1.72926 1.06294 1.62139 1.94655 1.26015 1.90235 1.21853 0.92690 0.93664 0.90677 0.88949 0.93220 0.97434 0.94983 0.92686 0.87500 0.90605 0.88917 0.88887 0.89697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.05 9.28 37.16 0.34 -2.71 16 2 C 0.06 0.99 5.73 -3.83 -0.02 0.96 16 3 N -0.53 -10.46 4.65 -237.52 -1.10 -11.57 16 4 C 0.19 4.61 4.49 -4.98 -0.02 4.58 16 5 C -0.51 -13.59 8.50 -34.44 -0.29 -13.88 16 6 H 0.06 1.71 7.11 -52.49 -0.37 1.34 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -25.59 13.29 55.43 0.74 -24.85 16 9 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 C 0.10 1.70 5.40 -4.98 -0.03 1.68 16 14 C 0.09 1.45 6.24 -35.31 -0.22 1.23 16 15 O 0.11 1.66 10.70 17.17 0.18 1.84 16 16 N -0.34 -4.88 12.07 33.42 0.40 -4.47 16 17 C 0.07 0.97 7.33 -82.10 -0.60 0.36 16 18 C -0.08 -0.80 10.47 36.00 0.38 -0.43 16 19 C -0.15 -2.40 6.98 -79.75 -0.56 -2.95 16 20 N 0.06 0.95 4.45 34.06 0.15 1.10 16 21 O -0.14 -2.36 19.26 -29.46 -0.57 -2.93 16 22 O -0.10 -1.79 19.26 -29.46 -0.57 -2.36 16 23 H 0.05 0.78 8.14 -51.92 -0.42 0.35 16 24 H 0.04 0.65 6.30 -51.93 -0.33 0.32 16 25 H 0.07 1.40 6.24 -51.93 -0.32 1.07 16 26 H 0.09 1.81 6.83 -51.93 -0.35 1.45 16 27 H 0.05 0.81 7.00 -51.93 -0.36 0.45 16 28 H 0.01 0.20 6.00 -51.93 -0.31 -0.12 16 29 H 0.03 0.84 7.87 -51.93 -0.41 0.43 16 30 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 31 H 0.11 1.80 7.82 -51.93 -0.41 1.39 16 32 H 0.08 1.11 5.92 -51.93 -0.31 0.80 16 33 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 306.37 15.07 4.62 4.62 Total: -1.00 -28.87 306.37 -6.29 -35.15 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -4.00 Total: -3.00 kcal Atomic # 6 Polarization: -8.52 SS G_CDS: -1.12 Total: -9.64 kcal Atomic # 7 Polarization: -39.98 SS G_CDS: 0.19 Total: -39.80 kcal Atomic # 8 Polarization: -2.49 SS G_CDS: -0.95 Total: -3.44 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.62 Total: 4.62 kcal Total: -28.87 -6.29 -35.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595334536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.667 kcal (2) G-P(sol) polarization free energy of solvation -28.867 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.800 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.154 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds