Wall clock time and date at job start Mon Mar 30 2020 00:44:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46902 * 109.47247 * 2 1 4 4 C 1.46896 * 110.99607 * 299.05803 * 3 2 1 5 5 C 1.50704 * 109.47675 * 293.95310 * 4 3 2 6 6 H 1.07999 * 119.99579 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00372 * 180.02562 * 5 4 3 8 8 N 1.31524 * 119.99948 * 0.02562 * 7 5 4 9 9 Si 1.86796 * 119.99973 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47340 * 60.00219 * 9 7 5 11 11 H 1.48504 * 109.47146 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47268 * 299.99793 * 9 7 5 13 13 C 1.46900 * 111.00162 * 63.01325 * 3 2 1 14 14 C 1.50696 * 109.47001 * 71.53147 * 13 3 2 15 15 O 1.34041 * 126.77868 * 269.27657 * 14 13 3 16 16 N 1.20925 * 111.56593 * 179.78992 * 15 14 13 17 17 C 1.30176 * 111.60609 * 0.48971 * 16 15 14 18 18 C 1.50694 * 126.80337 * 179.71908 * 17 16 15 19 19 C 1.35445 * 126.77662 * 89.59544 * 14 13 3 20 20 N 1.48021 * 128.00727 * 0.02562 * 19 14 13 21 21 O 1.21807 * 119.99882 * 90.00641 * 20 19 14 22 22 O 1.21802 * 120.00350 * 270.00322 * 20 19 14 23 23 H 1.09008 * 109.47026 * 178.88325 * 1 2 3 24 24 H 1.09000 * 109.47485 * 298.88520 * 1 2 3 25 25 H 1.08998 * 109.46968 * 58.88341 * 1 2 3 26 26 H 1.08997 * 109.47392 * 239.99419 * 2 1 3 27 27 H 1.09006 * 109.47573 * 119.99917 * 2 1 3 28 28 H 1.09001 * 109.47149 * 53.95761 * 4 3 2 29 29 H 1.09001 * 109.47354 * 173.95113 * 4 3 2 30 30 H 0.96998 * 119.99892 * 180.02562 * 8 7 5 31 31 H 1.08995 * 109.46830 * 191.53467 * 13 3 2 32 32 H 1.09004 * 109.46896 * 311.53556 * 13 3 2 33 33 H 1.09003 * 109.46918 * 269.98190 * 18 17 16 34 34 H 1.09000 * 109.46947 * 29.97570 * 18 17 16 35 35 H 1.09000 * 109.47320 * 149.98062 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5671 2.1033 -1.1988 5 6 2.2082 1.4963 -2.4202 6 1 2.8840 0.6603 -2.3162 7 6 1.9322 2.0083 -3.6702 8 7 1.1096 3.0268 -3.7967 9 14 2.7263 1.2555 -5.1841 10 1 2.3375 -0.1739 -5.2881 11 1 2.2699 1.9825 -6.3959 12 1 4.2034 1.3599 -5.0719 13 6 1.6084 2.0888 1.2221 14 6 2.3909 1.5574 2.3952 15 8 2.0424 0.5430 3.1991 16 7 2.8764 0.3450 4.0520 17 6 3.8704 1.1798 3.9534 18 6 5.0872 1.2435 4.8402 19 6 3.5824 2.0144 2.8492 20 7 4.3947 3.1299 2.3136 21 8 4.2274 4.2612 2.7329 22 8 5.2305 2.9166 1.4536 23 1 -0.3633 -1.0275 -0.0200 24 1 -0.3634 0.4964 0.8998 25 1 -0.3633 0.5311 -0.8798 26 1 1.8933 -0.5139 -0.8899 27 1 1.8934 -0.5138 0.8900 28 1 0.4830 2.0259 -1.2811 29 1 1.8516 3.1527 -1.1227 30 1 0.9151 3.3867 -4.6762 31 1 1.8018 3.1555 1.1095 32 1 0.5438 1.9285 1.3929 33 1 4.8922 1.9144 5.6768 34 1 5.3133 0.2468 5.2189 35 1 5.9359 1.6155 4.2663 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595334536.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:19 Heat of formation + Delta-G solvation = 51.904838 kcal Electronic energy + Delta-G solvation = -21161.958929 eV Core-core repulsion = 17780.821095 eV Total energy + Delta-G solvation = -3381.137833 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -46.75971 -43.22440 -39.34141 -37.77511 -36.50536 -35.03921 -34.10626 -31.24211 -30.24275 -29.85776 -28.31064 -26.65930 -25.11367 -23.94815 -22.51086 -21.31144 -20.42929 -20.11521 -19.23478 -18.54344 -18.45657 -17.69358 -17.04795 -16.76876 -16.03466 -15.63462 -14.87470 -14.67827 -14.58556 -14.42808 -13.91480 -13.63772 -13.42081 -13.16421 -13.00018 -12.84127 -12.81127 -12.63156 -12.52269 -12.50594 -12.41400 -11.95274 -11.86020 -11.64116 -11.43243 -11.13905 -10.59989 -9.23680 -8.20922 -6.29301 -0.84777 -0.47627 -0.13861 0.32662 1.39593 1.42823 1.45390 1.52712 2.40425 2.54736 2.61298 3.09638 3.12675 3.15544 3.50594 3.86041 3.99081 4.10005 4.17737 4.36835 4.38760 4.43667 4.56995 4.78724 4.79338 4.94184 4.95469 5.11027 5.26851 5.43751 5.60566 5.95669 6.10810 6.24473 6.38746 6.45924 6.82880 7.39435 8.89676 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022288 B = 0.005658 C = 0.005032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1256.006437 B = 4947.584928 C = 5563.417258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.057 3.943 3 N -0.540 5.540 4 C 0.209 3.791 5 C -0.522 4.522 6 H 0.060 0.940 7 C 0.009 3.991 8 N -0.930 5.930 9 Si 0.962 3.038 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.273 1.273 13 C 0.106 3.894 14 C 0.094 3.906 15 O 0.118 5.882 16 N -0.346 5.346 17 C 0.082 3.918 18 C -0.087 4.087 19 C -0.165 4.165 20 N 0.059 4.941 21 O -0.119 6.119 22 O -0.143 6.143 23 H 0.077 0.923 24 H 0.064 0.936 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.070 0.930 28 H -0.002 1.002 29 H 0.003 0.997 30 H 0.265 0.735 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.113 0.887 35 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.462 -4.407 16.048 16.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.071 4.071 3 N -0.265 5.265 4 C 0.084 3.916 5 C -0.560 4.560 6 H 0.078 0.922 7 C -0.189 4.189 8 N -0.570 5.570 9 Si 0.787 3.213 10 H -0.192 1.192 11 H -0.209 1.209 12 H -0.199 1.199 13 C -0.023 4.023 14 C 0.027 3.973 15 O 0.063 5.937 16 N -0.057 5.057 17 C -0.080 4.080 18 C -0.144 4.144 19 C -0.253 4.253 20 N 0.590 4.410 21 O -0.347 6.347 22 O -0.363 6.363 23 H 0.096 0.904 24 H 0.083 0.917 25 H 0.063 0.937 26 H 0.089 0.911 27 H 0.088 0.912 28 H 0.015 0.985 29 H 0.021 0.979 30 H 0.074 0.926 31 H 0.117 0.883 32 H 0.117 0.883 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.133 -5.964 16.982 18.124 hybrid contribution -0.071 0.934 -1.630 1.880 sum 2.062 -5.030 15.352 16.286 Atomic orbital electron populations 1.22286 0.96956 1.03113 1.01603 1.22081 0.94136 0.88972 1.01901 1.62293 1.60107 1.03420 1.00665 1.19470 0.93857 0.92447 0.85868 1.21309 1.26982 1.16500 0.91209 0.92216 1.25753 0.95695 0.95404 1.02073 1.70044 1.36683 1.25517 1.24739 0.85540 0.78833 0.78698 0.78200 1.19175 1.20878 1.19858 1.20922 0.98193 0.98229 0.84912 1.24347 0.92521 0.87321 0.93145 1.85002 1.38206 1.39773 1.30710 1.74005 1.00520 1.21095 1.10052 1.23775 0.99283 0.90162 0.94771 1.20621 0.89142 1.06874 0.97801 1.21568 0.97993 1.00650 1.05059 1.42187 0.99443 1.00566 0.98836 1.94540 1.72118 1.06848 1.61169 1.94670 1.27717 1.90493 1.23425 0.90410 0.91685 0.93670 0.91110 0.91183 0.98474 0.97907 0.92643 0.88297 0.88345 0.86669 0.86873 0.89591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.58 9.28 71.98 0.67 -4.91 16 2 C 0.06 1.98 5.73 86.30 0.49 2.48 16 3 N -0.54 -21.57 4.65 -905.38 -4.21 -25.78 16 4 C 0.21 10.30 4.49 85.56 0.38 10.68 16 5 C -0.52 -28.37 8.50 25.60 0.22 -28.16 16 6 H 0.06 3.23 7.11 -2.91 -0.02 3.21 16 7 C 0.01 0.52 5.46 84.65 0.46 0.98 16 8 N -0.93 -54.01 13.29 21.45 0.28 -53.73 16 9 Si 0.96 43.57 29.54 68.60 2.03 45.60 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.86 16 12 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 13 C 0.11 3.43 5.40 85.56 0.46 3.90 16 14 C 0.09 2.76 6.24 25.04 0.16 2.92 16 15 O 0.12 3.15 10.70 71.62 0.77 3.92 16 16 N -0.35 -8.94 12.07 -49.55 -0.60 -9.53 16 17 C 0.08 2.02 7.33 43.58 0.32 2.34 16 18 C -0.09 -1.39 10.47 71.23 0.75 -0.65 16 19 C -0.17 -4.95 6.98 36.50 0.25 -4.69 16 20 N 0.06 1.97 4.45 -46.15 -0.21 1.76 16 21 O -0.12 -3.89 19.26 18.88 0.36 -3.52 16 22 O -0.14 -5.37 19.26 18.88 0.36 -5.01 16 23 H 0.08 2.03 8.14 -2.38 -0.02 2.01 16 24 H 0.06 1.72 6.30 -2.39 -0.02 1.71 16 25 H 0.04 1.67 6.24 -2.39 -0.01 1.66 16 26 H 0.07 2.77 6.83 -2.39 -0.02 2.75 16 27 H 0.07 2.16 7.00 -2.38 -0.02 2.14 16 28 H 0.00 -0.12 6.00 -2.39 -0.01 -0.14 16 29 H 0.00 0.16 7.87 -2.39 -0.02 0.14 16 30 H 0.26 14.61 8.31 -92.71 -0.77 13.84 16 31 H 0.10 3.35 7.82 -2.39 -0.02 3.33 16 32 H 0.10 2.72 5.92 -2.38 -0.01 2.71 16 33 H 0.12 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -62.29 306.37 4.08 -58.21 By element: Atomic # 1 Polarization: 2.07 SS G_CDS: 1.12 Total: 3.20 kcal Atomic # 6 Polarization: -19.28 SS G_CDS: 4.17 Total: -15.11 kcal Atomic # 7 Polarization: -82.55 SS G_CDS: -4.73 Total: -87.28 kcal Atomic # 8 Polarization: -6.11 SS G_CDS: 1.49 Total: -4.61 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.60 kcal Total: -62.29 4.08 -58.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595334536.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.113 kcal (2) G-P(sol) polarization free energy of solvation -62.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds