Wall clock time and date at job start Mon Mar 30 2020 01:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00257 * 2 1 4 4 H 1.48502 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47305 * 300.00292 * 3 2 1 6 6 H 1.48505 * 109.46791 * 60.00125 * 3 2 1 7 7 C 1.37881 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00287 * 192.72438 * 7 2 1 9 9 C 1.50702 * 119.99858 * 12.72453 * 7 2 1 10 10 C 1.52997 * 115.56365 * 39.04376 * 9 7 2 11 11 N 1.46499 * 109.47156 * 88.99190 * 10 9 7 12 12 N 1.40077 * 126.13702 * 358.99652 * 11 10 9 13 13 C 1.30899 * 108.50469 * 179.81292 * 12 11 10 14 14 C 1.39505 * 108.59462 * 0.44192 * 13 12 11 15 15 C 1.36289 * 126.13719 * 179.30067 * 11 10 9 16 16 C 1.47980 * 126.34165 * 0.02562 * 15 11 10 17 17 C 1.39930 * 120.55494 * 182.80521 * 16 15 11 18 18 C 1.38367 * 118.29869 * 179.80350 * 17 16 15 19 19 C 1.38344 * 119.29557 * 0.45945 * 18 17 16 20 20 N 1.31890 * 121.07124 * 359.78161 * 19 18 17 21 21 C 1.31729 * 121.86888 * 359.97438 * 20 19 18 22 22 C 1.52998 * 117.49586 * 253.35437 * 9 7 2 23 23 C 1.52997 * 117.49855 * 184.73368 * 9 7 2 24 24 H 0.97005 * 119.99853 * 354.99094 * 1 2 3 25 25 H 1.08999 * 109.47074 * 208.99651 * 10 9 7 26 26 H 1.09003 * 109.47065 * 328.99413 * 10 9 7 27 27 H 1.07999 * 125.69880 * 180.11889 * 13 12 11 28 28 H 1.08000 * 126.07330 * 179.73465 * 14 13 12 29 29 H 1.08000 * 120.84434 * 0.02562 * 17 16 15 30 30 H 1.07994 * 120.35183 * 180.22044 * 18 17 16 31 31 H 1.08002 * 119.46152 * 179.76643 * 19 18 17 32 32 H 1.07997 * 119.71178 * 179.97438 * 21 20 19 33 33 H 1.08998 * 117.50134 * 0.02562 * 22 9 7 34 34 H 1.09004 * 117.49851 * 145.01900 * 22 9 7 35 35 H 1.08995 * 117.50035 * 214.97568 * 23 9 7 36 36 H 1.09000 * 117.49821 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0646 -1.2057 0.2055 9 6 1.2787 -2.4830 -0.2886 10 6 0.2097 -2.4089 -1.3806 11 7 0.8220 -2.6834 -2.6829 12 7 2.1765 -2.9520 -2.9187 13 6 2.3435 -3.1498 -4.2018 14 6 1.1103 -3.0067 -4.8382 15 6 0.1771 -2.7177 -3.8830 16 6 -1.2665 -2.4845 -4.1098 17 6 -1.8141 -2.6071 -5.3916 18 6 -3.1703 -2.3827 -5.5498 19 6 -3.9324 -2.0381 -4.4478 20 7 -3.3878 -1.9250 -3.2520 21 6 -2.1028 -2.1333 -3.0504 22 6 1.0231 -3.4277 0.8874 23 6 2.0741 -3.7843 -0.1657 24 1 -0.4850 0.8369 0.0734 25 1 -0.5658 -3.1483 -1.1806 26 1 -0.2320 -1.4124 -1.3896 27 1 3.2804 -3.3798 -4.6873 28 1 0.9260 -3.1069 -5.8976 29 1 -1.1947 -2.8736 -6.2352 30 1 -3.6282 -2.4717 -6.5238 31 1 -4.9905 -1.8587 -4.5689 32 1 -1.6933 -2.0306 -2.0564 33 1 1.3794 -3.1168 1.8695 34 1 0.0932 -3.9965 0.8831 35 1 1.8357 -4.5875 -0.8628 36 1 3.1223 -3.7080 0.1230 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596255344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:37 Heat of formation + Delta-G solvation = 147.967757 kcal Electronic energy + Delta-G solvation = -20247.577122 eV Core-core repulsion = 17313.746904 eV Total energy + Delta-G solvation = -2933.830218 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.78607 -39.46903 -36.74188 -33.03362 -32.39286 -32.24405 -30.98273 -28.45732 -26.29334 -25.44282 -23.64733 -23.29461 -21.22254 -20.56765 -19.65718 -19.00634 -17.11540 -16.62778 -16.13945 -15.80889 -15.02873 -14.55882 -14.40504 -13.80290 -13.63581 -13.47540 -13.14448 -13.01420 -12.76828 -12.44940 -11.86385 -11.62256 -11.47042 -11.03245 -10.81881 -10.49363 -10.34738 -10.10533 -9.97199 -9.51788 -9.43244 -9.29185 -9.17298 -8.76220 -8.35150 -8.10363 -7.72598 -6.18982 -4.17833 0.90786 1.35265 2.73761 3.20170 3.21857 3.31645 3.36720 3.39304 4.06201 4.30574 4.52054 4.84681 4.87860 4.91596 5.01497 5.11319 5.21987 5.52095 5.54360 5.74898 5.90095 6.01712 6.09245 6.11164 6.16491 6.21804 6.36597 6.48027 6.63852 6.72066 6.74388 6.80195 6.97832 7.24069 7.30450 7.31210 7.74760 7.82664 8.11035 8.29987 8.42542 8.78139 9.40505 10.85013 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.016375 B = 0.007168 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.514515 B = 3905.348354 C = 4422.010656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.062 3.938 3 Si 0.896 3.104 4 H -0.271 1.271 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.465 4.465 8 H 0.065 0.935 9 C 0.047 3.953 10 C 0.137 3.863 11 N -0.323 5.323 12 N -0.242 5.242 13 C 0.008 3.992 14 C -0.263 4.263 15 C 0.096 3.904 16 C -0.067 4.067 17 C -0.058 4.058 18 C -0.175 4.175 19 C 0.090 3.910 20 N -0.476 5.476 21 C 0.099 3.901 22 C -0.201 4.201 23 C -0.175 4.175 24 H 0.266 0.734 25 H 0.055 0.945 26 H 0.146 0.854 27 H 0.174 0.826 28 H 0.138 0.862 29 H 0.138 0.862 30 H 0.135 0.865 31 H 0.154 0.846 32 H 0.177 0.823 33 H 0.082 0.918 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.643 -5.005 -10.603 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.138 4.138 3 Si 0.723 3.277 4 H -0.195 1.195 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.502 4.502 8 H 0.083 0.917 9 C 0.046 3.954 10 C 0.019 3.981 11 N -0.105 5.105 12 N -0.064 5.064 13 C -0.175 4.175 14 C -0.294 4.294 15 C -0.033 4.033 16 C -0.071 4.071 17 C -0.085 4.085 18 C -0.195 4.195 19 C -0.067 4.067 20 N -0.184 5.184 21 C -0.059 4.059 22 C -0.239 4.239 23 C -0.212 4.212 24 H 0.077 0.923 25 H 0.073 0.927 26 H 0.163 0.837 27 H 0.191 0.809 28 H 0.155 0.845 29 H 0.156 0.844 30 H 0.153 0.847 31 H 0.171 0.829 32 H 0.194 0.806 33 H 0.101 0.899 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.779 -4.552 -8.644 10.875 hybrid contribution 0.533 0.590 -1.578 1.767 sum -4.246 -3.961 -10.222 11.756 Atomic orbital electron populations 1.69590 1.05962 1.27305 1.50148 1.24980 0.94942 0.99364 0.94560 0.86452 0.80401 0.83129 0.77684 1.19534 1.20860 1.20873 1.20583 0.94837 0.88910 1.45920 0.91715 1.18758 0.94699 0.90206 0.91693 1.22359 0.94346 1.03975 0.77462 1.49479 1.04927 1.49839 1.06299 1.77640 0.94044 1.18564 1.16192 1.23646 0.98536 1.03312 0.92040 1.21179 0.92425 1.16726 0.99036 1.19329 0.91437 1.04987 0.87522 1.19140 0.91186 1.01761 0.95034 1.21532 0.95035 0.95870 0.96087 1.22017 0.94415 1.02517 1.00570 1.22872 1.00385 0.95350 0.88121 1.67756 1.12948 1.13172 1.24484 1.23907 0.88668 0.92883 1.00396 1.23135 0.98644 1.06332 0.95811 1.22639 0.96272 1.00415 1.01905 0.92338 0.92708 0.83715 0.80869 0.84459 0.84448 0.84678 0.82889 0.80634 0.89908 0.91740 0.91563 0.90387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.82 10.89 55.43 0.60 -23.22 16 2 C 0.06 1.66 5.15 -17.82 -0.09 1.56 16 3 Si 0.90 21.12 29.56 -169.99 -5.02 16.10 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 7 C -0.47 -12.50 9.01 -34.44 -0.31 -12.81 16 8 H 0.06 1.78 7.85 -52.49 -0.41 1.37 16 9 C 0.05 1.16 1.52 -155.66 -0.24 0.92 16 10 C 0.14 3.15 4.30 -4.04 -0.02 3.13 16 11 N -0.32 -7.02 3.98 -57.41 -0.23 -7.24 16 12 N -0.24 -5.23 10.45 30.56 0.32 -4.91 16 13 C 0.01 0.14 11.99 -17.48 -0.21 -0.07 16 14 C -0.26 -4.39 10.22 -39.69 -0.41 -4.80 16 15 C 0.10 1.82 6.88 -82.48 -0.57 1.25 16 16 C -0.07 -1.15 5.89 -104.81 -0.62 -1.76 16 17 C -0.06 -0.77 9.69 -38.90 -0.38 -1.15 16 18 C -0.18 -2.01 10.10 -39.49 -0.40 -2.41 16 19 C 0.09 1.18 11.17 -17.49 -0.20 0.98 16 20 N -0.48 -8.08 10.35 -12.93 -0.13 -8.21 16 21 C 0.10 1.81 10.42 -17.14 -0.18 1.63 16 22 C -0.20 -4.50 9.88 -26.73 -0.26 -4.76 16 23 C -0.17 -3.89 8.62 -26.73 -0.23 -4.12 16 24 H 0.27 6.85 8.32 -40.82 -0.34 6.51 16 25 H 0.05 1.18 7.02 -51.93 -0.36 0.82 16 26 H 0.15 3.62 4.12 -51.93 -0.21 3.41 16 27 H 0.17 2.39 8.06 -52.49 -0.42 1.96 16 28 H 0.14 1.79 7.36 -52.49 -0.39 1.41 16 29 H 0.14 1.46 7.15 -52.49 -0.38 1.08 16 30 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 31 H 0.15 1.48 8.06 -52.49 -0.42 1.05 16 32 H 0.18 3.53 3.80 -52.49 -0.20 3.33 16 33 H 0.08 1.86 8.14 -51.93 -0.42 1.44 16 34 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 35 H 0.07 1.44 8.00 -51.93 -0.42 1.02 16 36 H 0.08 1.73 8.14 -51.93 -0.42 1.31 16 LS Contribution 303.49 15.07 4.57 4.57 Total: -1.00 -29.51 303.49 -8.02 -37.53 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: -4.03 Total: 7.77 kcal Atomic # 6 Polarization: -18.30 SS G_CDS: -4.10 Total: -22.40 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: 0.56 Total: -43.58 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.51 -8.02 -37.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596255344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.499 kcal (2) G-P(sol) polarization free energy of solvation -29.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 155.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds