Wall clock time and date at job start Mon Mar 30 2020 01:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86799 * 120.00257 * 2 1 4 4 H 1.48502 * 109.47097 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47305 * 300.00292 * 3 2 1 6 6 H 1.48505 * 109.46791 * 60.00125 * 3 2 1 7 7 C 1.37881 * 119.99979 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00287 * 192.72438 * 7 2 1 9 9 C 1.50702 * 119.99858 * 12.72453 * 7 2 1 10 10 C 1.52997 * 115.56365 * 39.04376 * 9 7 2 11 11 N 1.46499 * 109.47156 * 88.99190 * 10 9 7 12 12 N 1.40077 * 126.13702 * 358.99652 * 11 10 9 13 13 C 1.30899 * 108.50469 * 179.81292 * 12 11 10 14 14 C 1.39505 * 108.59462 * 0.44192 * 13 12 11 15 15 C 1.36289 * 126.13719 * 179.30067 * 11 10 9 16 16 C 1.47980 * 126.34165 * 0.02562 * 15 11 10 17 17 C 1.39930 * 120.55494 * 182.80521 * 16 15 11 18 18 C 1.38367 * 118.29869 * 179.80350 * 17 16 15 19 19 C 1.38344 * 119.29557 * 0.45945 * 18 17 16 20 20 N 1.31890 * 121.07124 * 359.78161 * 19 18 17 21 21 C 1.31729 * 121.86888 * 359.97438 * 20 19 18 22 22 C 1.52998 * 117.49586 * 253.35437 * 9 7 2 23 23 C 1.52997 * 117.49855 * 184.73368 * 9 7 2 24 24 H 0.97005 * 119.99853 * 354.99094 * 1 2 3 25 25 H 1.08999 * 109.47074 * 208.99651 * 10 9 7 26 26 H 1.09003 * 109.47065 * 328.99413 * 10 9 7 27 27 H 1.07999 * 125.69880 * 180.11889 * 13 12 11 28 28 H 1.08000 * 126.07330 * 179.73465 * 14 13 12 29 29 H 1.08000 * 120.84434 * 0.02562 * 17 16 15 30 30 H 1.07994 * 120.35183 * 180.22044 * 18 17 16 31 31 H 1.08002 * 119.46152 * 179.76643 * 19 18 17 32 32 H 1.07997 * 119.71178 * 179.97438 * 21 20 19 33 33 H 1.08998 * 117.50134 * 0.02562 * 22 9 7 34 34 H 1.09004 * 117.49851 * 145.01900 * 22 9 7 35 35 H 1.08995 * 117.50035 * 214.97568 * 23 9 7 36 36 H 1.09000 * 117.49821 * 359.97438 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3965 -1.2124 6 1 1.8904 2.3964 1.2126 7 6 2.0045 -1.1941 -0.0005 8 1 3.0646 -1.2057 0.2055 9 6 1.2787 -2.4830 -0.2886 10 6 0.2097 -2.4089 -1.3806 11 7 0.8220 -2.6834 -2.6829 12 7 2.1765 -2.9520 -2.9187 13 6 2.3435 -3.1498 -4.2018 14 6 1.1103 -3.0067 -4.8382 15 6 0.1771 -2.7177 -3.8830 16 6 -1.2665 -2.4845 -4.1098 17 6 -1.8141 -2.6071 -5.3916 18 6 -3.1703 -2.3827 -5.5498 19 6 -3.9324 -2.0381 -4.4478 20 7 -3.3878 -1.9250 -3.2520 21 6 -2.1028 -2.1333 -3.0504 22 6 1.0231 -3.4277 0.8874 23 6 2.0741 -3.7843 -0.1657 24 1 -0.4850 0.8369 0.0734 25 1 -0.5658 -3.1483 -1.1806 26 1 -0.2320 -1.4124 -1.3896 27 1 3.2804 -3.3798 -4.6873 28 1 0.9260 -3.1069 -5.8976 29 1 -1.1947 -2.8736 -6.2352 30 1 -3.6282 -2.4717 -6.5238 31 1 -4.9905 -1.8587 -4.5689 32 1 -1.6933 -2.0306 -2.0564 33 1 1.3794 -3.1168 1.8695 34 1 0.0932 -3.9965 0.8831 35 1 1.8357 -4.5875 -0.8628 36 1 3.1223 -3.7080 0.1230 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596255344.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:11:37 Heat of formation + Delta-G solvation = 131.208085 kcal Electronic energy + Delta-G solvation = -20248.303876 eV Core-core repulsion = 17313.746904 eV Total energy + Delta-G solvation = -2934.556972 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.14545 -40.65086 -38.55012 -34.34418 -34.23700 -33.66831 -32.24948 -29.77463 -28.05424 -27.30398 -24.77368 -24.50332 -23.02408 -22.07989 -21.01757 -20.74497 -18.61471 -17.93651 -17.65667 -16.92864 -16.88448 -16.23123 -15.87283 -15.34149 -14.90922 -14.79898 -14.68487 -14.36849 -13.96338 -13.83509 -13.47997 -13.36126 -12.99243 -12.83457 -12.64314 -12.36841 -12.17069 -11.55103 -11.37479 -11.25588 -11.11916 -10.64388 -10.49357 -10.42775 -10.15356 -9.69955 -9.07036 -8.19679 -6.24871 -0.25140 0.28825 1.31626 1.36522 1.38467 1.46966 1.73099 2.09027 2.33995 2.91640 2.92476 3.34958 3.54815 3.67680 3.81119 3.91760 3.99575 4.09531 4.27683 4.32467 4.51318 4.52960 4.69313 4.72670 4.77294 4.86879 4.91418 5.00873 5.02696 5.14132 5.17012 5.37637 5.41928 5.49206 5.72688 5.79289 5.94256 6.24018 6.31992 6.70055 6.98386 7.03189 7.34299 8.81842 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.016375 B = 0.007168 C = 0.006330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.514515 B = 3905.348354 C = 4422.010656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.025 3.975 3 Si 0.947 3.053 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.274 1.274 7 C -0.484 4.484 8 H 0.048 0.952 9 C 0.023 3.977 10 C 0.156 3.844 11 N -0.351 5.351 12 N -0.295 5.295 13 C 0.013 3.987 14 C -0.253 4.253 15 C 0.083 3.917 16 C -0.090 4.090 17 C -0.051 4.051 18 C -0.154 4.154 19 C 0.086 3.914 20 N -0.508 5.508 21 C 0.070 3.930 22 C -0.197 4.197 23 C -0.155 4.155 24 H 0.266 0.734 25 H 0.052 0.948 26 H 0.121 0.879 27 H 0.211 0.789 28 H 0.181 0.819 29 H 0.172 0.828 30 H 0.186 0.814 31 H 0.189 0.811 32 H 0.143 0.857 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.388 -5.392 -13.839 15.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.174 4.174 3 Si 0.774 3.226 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.199 1.199 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.022 3.978 10 C 0.036 3.964 11 N -0.133 5.133 12 N -0.117 5.117 13 C -0.170 4.170 14 C -0.283 4.283 15 C -0.045 4.045 16 C -0.094 4.094 17 C -0.078 4.078 18 C -0.174 4.174 19 C -0.071 4.071 20 N -0.217 5.217 21 C -0.087 4.087 22 C -0.235 4.235 23 C -0.193 4.193 24 H 0.076 0.924 25 H 0.070 0.930 26 H 0.138 0.862 27 H 0.228 0.772 28 H 0.198 0.802 29 H 0.189 0.811 30 H 0.203 0.797 31 H 0.206 0.794 32 H 0.160 0.840 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.089 0.911 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -5.519 -4.948 -11.872 13.996 hybrid contribution 0.670 0.678 -0.719 1.194 sum -4.849 -4.270 -12.591 14.152 Atomic orbital electron populations 1.69727 1.06677 1.27680 1.50341 1.25559 0.95662 1.01725 0.94488 0.85653 0.79194 0.80094 0.77699 1.19653 1.21054 1.19924 1.20698 0.94252 0.90578 1.46645 0.93350 1.18857 0.95909 0.90017 0.93050 1.21851 0.93672 1.02562 0.78290 1.49326 1.05380 1.52104 1.06493 1.77554 0.94454 1.21020 1.18639 1.24368 1.00447 1.01161 0.91065 1.21648 0.91128 1.14960 1.00543 1.19954 0.92857 1.04582 0.87086 1.19241 0.90205 1.03490 0.96497 1.21976 0.96286 0.94404 0.95127 1.22541 0.93429 0.99354 1.02034 1.23597 1.02221 0.93921 0.87386 1.67687 1.12453 1.14482 1.27084 1.23486 0.89819 0.95503 0.99841 1.23133 0.99348 1.05779 0.95239 1.22497 0.95853 0.99481 1.01432 0.92421 0.92951 0.86180 0.77230 0.80196 0.81084 0.79660 0.79393 0.83974 0.90330 0.90358 0.91062 0.90703 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -50.30 10.89 21.45 0.23 -50.07 16 2 C 0.02 1.36 5.15 84.66 0.44 1.79 16 3 Si 0.95 44.35 29.56 68.60 2.03 46.38 16 4 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 5 H -0.28 -13.29 7.11 99.48 0.71 -12.59 16 6 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 7 C -0.48 -27.03 9.01 25.60 0.23 -26.80 16 8 H 0.05 2.77 7.85 -2.91 -0.02 2.75 16 9 C 0.02 1.14 1.52 -52.93 -0.08 1.06 16 10 C 0.16 7.55 4.30 86.38 0.37 7.92 16 11 N -0.35 -15.59 3.98 -335.55 -1.33 -16.93 16 12 N -0.29 -12.82 10.45 -57.23 -0.60 -13.41 16 13 C 0.01 0.44 11.99 85.14 1.02 1.46 16 14 C -0.25 -7.79 10.22 22.20 0.23 -7.56 16 15 C 0.08 3.09 6.88 40.66 0.28 3.37 16 16 C -0.09 -3.01 5.89 -19.99 -0.12 -3.13 16 17 C -0.05 -1.17 9.69 22.71 0.22 -0.95 16 18 C -0.15 -2.81 10.10 22.33 0.23 -2.59 16 19 C 0.09 2.01 11.17 84.71 0.95 2.96 16 20 N -0.51 -17.25 10.35 -194.81 -2.02 -19.27 16 21 C 0.07 2.65 10.42 85.00 0.89 3.54 16 22 C -0.20 -9.06 9.88 30.59 0.30 -8.76 16 23 C -0.16 -7.08 8.62 30.59 0.26 -6.82 16 24 H 0.27 14.16 8.32 -92.70 -0.77 13.39 16 25 H 0.05 2.44 7.02 -2.39 -0.02 2.42 16 26 H 0.12 6.42 4.12 -2.39 -0.01 6.41 16 27 H 0.21 5.14 8.06 -2.91 -0.02 5.12 16 28 H 0.18 3.79 7.36 -2.91 -0.02 3.77 16 29 H 0.17 2.66 7.15 -2.91 -0.02 2.64 16 30 H 0.19 1.56 8.06 -2.91 -0.02 1.54 16 31 H 0.19 2.89 8.06 -2.91 -0.02 2.86 16 32 H 0.14 6.24 3.80 -2.91 -0.01 6.23 16 33 H 0.08 3.63 8.14 -2.39 -0.02 3.61 16 34 H 0.08 3.33 8.04 -2.38 -0.02 3.32 16 35 H 0.07 3.15 8.00 -2.39 -0.02 3.13 16 36 H 0.07 3.41 8.14 -2.39 -0.02 3.39 16 Total: -1.00 -68.01 303.49 4.62 -63.39 By element: Atomic # 1 Polarization: 23.31 SS G_CDS: 1.10 Total: 24.41 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 5.21 Total: -34.50 kcal Atomic # 7 Polarization: -95.96 SS G_CDS: -3.71 Total: -99.68 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -68.01 4.62 -63.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596255344.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 194.599 kcal (2) G-P(sol) polarization free energy of solvation -68.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.391 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds