Wall clock time and date at job start Mon Mar 30 2020 01:12:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99722 * 2 1 4 4 H 1.48502 * 109.46793 * 274.58455 * 3 2 1 5 5 H 1.48500 * 109.47166 * 34.58252 * 3 2 1 6 6 H 1.48500 * 109.47020 * 154.58413 * 3 2 1 7 7 C 1.37874 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99577 * 4.74061 * 7 2 1 9 9 C 1.50697 * 120.00151 * 184.72667 * 7 2 1 10 10 C 1.53001 * 115.54849 * 84.77762 * 9 7 2 11 11 N 1.46507 * 109.47202 * 39.98905 * 10 9 7 12 12 C 1.35046 * 125.93086 * 122.86609 * 11 10 9 13 13 C 1.35058 * 107.99155 * 179.70890 * 12 11 10 14 14 C 1.40879 * 107.85189 * 0.42894 * 13 12 11 15 15 C 1.48344 * 126.04640 * 179.83084 * 14 13 12 16 16 C 1.39340 * 119.72818 * 174.90991 * 15 14 13 17 17 C 1.38379 * 119.06921 * 180.27262 * 16 15 14 18 18 C 1.38800 * 118.51026 * 359.48570 * 17 16 15 19 19 C 1.38225 * 119.37124 * 0.46897 * 18 17 16 20 20 N 1.31780 * 120.89083 * 359.79684 * 19 18 17 21 21 N 1.31663 * 107.91195 * 359.56843 * 14 13 12 22 22 C 1.52997 * 117.52177 * 230.47661 * 9 7 2 23 23 C 1.52998 * 60.00072 * 107.48464 * 22 9 7 24 24 H 0.97003 * 120.00156 * 5.00880 * 1 2 3 25 25 H 1.08994 * 109.47352 * 279.99035 * 10 9 7 26 26 H 1.08994 * 109.47444 * 159.98393 * 10 9 7 27 27 H 1.08001 * 126.00955 * 359.97438 * 12 11 10 28 28 H 1.08005 * 126.08087 * 180.26162 * 13 12 11 29 29 H 1.08003 * 120.47052 * 359.97438 * 16 15 14 30 30 H 1.08000 * 120.74539 * 179.69737 * 17 16 15 31 31 H 1.08005 * 120.31408 * 180.22316 * 18 17 16 32 32 H 1.08004 * 119.55360 * 179.76890 * 19 18 17 33 33 H 1.08998 * 117.50385 * 214.97614 * 22 9 7 34 34 H 1.09004 * 117.49581 * 359.97438 * 22 9 7 35 35 H 1.09001 * 117.49885 * 252.51483 * 23 22 9 36 36 H 1.08996 * 117.49878 * 107.49280 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3996 2.1024 -1.3956 5 1 1.4983 2.6228 0.7947 6 1 3.5917 1.4143 0.6009 7 6 2.0046 -1.1940 0.0005 8 1 1.4673 -2.1277 -0.0764 9 6 3.5077 -1.1961 0.1081 10 6 4.0676 -1.1275 1.5303 11 7 3.2570 -1.9678 2.4153 12 6 3.7108 -2.9902 3.1720 13 6 2.6616 -3.5070 3.8474 14 6 1.5123 -2.7780 3.4835 15 6 0.1358 -3.0107 3.9852 16 6 -0.8896 -2.1416 3.6180 17 6 -2.1673 -2.3682 4.0985 18 6 -2.3804 -3.4643 4.9230 19 6 -1.3172 -4.2863 5.2463 20 7 -0.1088 -4.0446 4.7794 21 7 1.8769 -1.8499 2.6237 22 6 4.2889 -2.0172 -0.9197 23 6 4.2961 -0.4891 -0.9963 24 1 -0.4850 0.8368 -0.0733 25 1 4.0397 -0.0964 1.8824 26 1 5.0973 -1.4847 1.5331 27 1 4.7337 -3.3316 3.2306 28 1 2.6967 -4.3342 4.5410 29 1 -0.6891 -1.3002 2.9713 30 1 -2.9813 -1.7090 3.8351 31 1 -3.3668 -3.6706 5.3115 32 1 -1.4789 -5.1378 5.8907 33 1 5.2016 -2.5085 -0.5828 34 1 3.7155 -2.5565 -1.6738 35 1 3.7274 -0.0228 -1.8009 36 1 5.2135 0.0248 -0.7096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596274778.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:33 Heat of formation + Delta-G solvation = 151.826354 kcal Electronic energy + Delta-G solvation = -20009.711713 eV Core-core repulsion = 17076.048815 eV Total energy + Delta-G solvation = -2933.662897 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.47552 -39.35723 -37.06734 -32.76720 -32.05888 -31.95845 -30.40097 -29.20448 -26.38905 -25.32602 -23.15898 -23.06527 -21.76387 -20.17043 -19.82159 -18.88361 -17.05146 -16.35955 -15.68605 -15.41586 -15.04786 -14.88950 -14.40373 -13.80114 -13.53054 -13.26952 -12.99717 -12.89025 -12.65728 -12.30441 -12.15717 -12.09796 -11.29099 -11.13268 -10.70657 -10.56937 -10.35506 -9.76829 -9.67913 -9.53664 -9.26153 -9.17690 -9.04566 -8.61160 -8.43670 -8.06140 -7.64122 -6.01819 -3.99767 1.28458 1.68822 2.74985 3.21526 3.29024 3.38986 3.39582 3.48344 4.46016 4.47058 4.58075 4.79247 5.11253 5.14830 5.23332 5.26614 5.40531 5.48437 5.61227 5.75312 5.83635 5.86559 5.99694 6.15036 6.26683 6.28055 6.35655 6.39956 6.47549 6.57166 6.62142 6.74425 6.90819 6.99646 7.10871 7.32230 7.67544 7.85827 8.30888 8.54659 8.59417 9.01725 9.60759 11.10405 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020730 B = 0.006809 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.352730 B = 4111.276028 C = 5048.234767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.092 3.908 3 Si 0.871 3.129 4 H -0.283 1.283 5 H -0.295 1.295 6 H -0.262 1.262 7 C -0.455 4.455 8 H 0.075 0.925 9 C -0.017 4.017 10 C 0.159 3.841 11 N -0.332 5.332 12 C 0.020 3.980 13 C -0.239 4.239 14 C 0.057 3.943 15 C 0.220 3.780 16 C -0.134 4.134 17 C -0.078 4.078 18 C -0.185 4.185 19 C 0.092 3.908 20 N -0.477 5.477 21 N -0.176 5.176 22 C -0.179 4.179 23 C -0.191 4.191 24 H 0.261 0.739 25 H 0.078 0.922 26 H 0.075 0.925 27 H 0.163 0.837 28 H 0.142 0.858 29 H 0.153 0.847 30 H 0.133 0.867 31 H 0.129 0.871 32 H 0.152 0.848 33 H 0.071 0.929 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.571 -4.265 7.791 9.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.111 4.111 3 Si 0.699 3.301 4 H -0.210 1.210 5 H -0.222 1.222 6 H -0.186 1.186 7 C -0.492 4.492 8 H 0.093 0.907 9 C -0.019 4.019 10 C 0.037 3.963 11 N -0.115 5.115 12 C -0.124 4.124 13 C -0.269 4.269 14 C -0.107 4.107 15 C 0.082 3.918 16 C -0.155 4.155 17 C -0.104 4.104 18 C -0.205 4.205 19 C -0.066 4.066 20 N -0.187 5.187 21 N 0.000 5.000 22 C -0.216 4.216 23 C -0.229 4.229 24 H 0.071 0.929 25 H 0.096 0.904 26 H 0.093 0.907 27 H 0.181 0.819 28 H 0.159 0.841 29 H 0.171 0.829 30 H 0.151 0.849 31 H 0.147 0.853 32 H 0.169 0.831 33 H 0.090 0.910 34 H 0.106 0.894 35 H 0.108 0.892 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.837 -3.645 7.267 8.611 hybrid contribution 0.041 0.770 0.071 0.774 sum 2.878 -2.875 7.339 8.391 Atomic orbital electron populations 1.69896 1.06143 1.26767 1.49583 1.24765 0.94367 0.98167 0.93790 0.87026 0.80648 0.84562 0.77838 1.20959 1.22188 1.18620 1.19955 0.85436 0.94541 1.49317 0.90744 1.19717 0.95917 1.00421 0.85835 1.21659 0.90390 0.93552 0.90652 1.48515 1.05622 1.24756 1.32619 1.22325 0.99838 0.93330 0.96952 1.21229 0.90984 1.06159 1.08572 1.20258 0.92183 0.98914 0.99353 1.18556 0.90545 0.90287 0.92397 1.22401 0.92586 1.01144 0.99370 1.21545 0.97101 0.96639 0.95120 1.22084 1.00422 0.97061 1.00974 1.22546 0.87744 0.98579 0.97724 1.67455 1.23247 1.18134 1.09876 1.78304 0.89499 1.19602 1.12636 1.22906 1.01067 0.93029 1.04619 1.22963 1.01411 0.94785 1.03762 0.92949 0.90440 0.90714 0.81930 0.84058 0.82935 0.84942 0.85332 0.83080 0.91005 0.89423 0.89158 0.90848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.90 13.95 55.43 0.77 -25.13 16 2 C 0.09 2.53 5.47 -17.82 -0.10 2.43 16 3 Si 0.87 21.03 25.19 -169.99 -4.28 16.75 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 6 H -0.26 -5.84 5.24 56.52 0.30 -5.54 16 7 C -0.45 -12.20 7.03 -34.44 -0.24 -12.44 16 8 H 0.07 2.31 8.06 -52.49 -0.42 1.88 16 9 C -0.02 -0.38 1.19 -155.66 -0.18 -0.56 16 10 C 0.16 3.12 6.43 -4.04 -0.03 3.09 16 11 N -0.33 -6.94 3.58 -61.41 -0.22 -7.16 16 12 C 0.02 0.35 11.42 -17.27 -0.20 0.15 16 13 C -0.24 -4.52 10.54 -39.71 -0.42 -4.94 16 14 C 0.06 1.23 7.01 -82.78 -0.58 0.65 16 15 C 0.22 4.45 6.75 -82.94 -0.56 3.89 16 16 C -0.13 -2.62 9.73 -39.12 -0.38 -3.00 16 17 C -0.08 -1.22 10.17 -39.32 -0.40 -1.62 16 18 C -0.18 -2.48 10.11 -39.38 -0.40 -2.88 16 19 C 0.09 1.33 11.17 -17.58 -0.20 1.14 16 20 N -0.48 -8.64 10.08 -9.78 -0.10 -8.73 16 21 N -0.18 -4.18 10.03 33.42 0.34 -3.85 16 22 C -0.18 -3.44 9.88 -26.73 -0.26 -3.70 16 23 C -0.19 -3.78 7.34 -26.73 -0.20 -3.97 16 24 H 0.26 7.24 8.32 -40.82 -0.34 6.90 16 25 H 0.08 1.56 6.64 -51.93 -0.34 1.21 16 26 H 0.07 1.17 7.87 -51.93 -0.41 0.76 16 27 H 0.16 2.14 8.06 -52.49 -0.42 1.71 16 28 H 0.14 2.38 8.06 -52.48 -0.42 1.96 16 29 H 0.15 3.39 7.85 -52.48 -0.41 2.98 16 30 H 0.13 1.74 8.06 -52.49 -0.42 1.32 16 31 H 0.13 1.26 8.06 -52.48 -0.42 0.84 16 32 H 0.15 1.62 8.06 -52.48 -0.42 1.19 16 33 H 0.07 1.18 8.08 -51.93 -0.42 0.76 16 34 H 0.09 1.75 8.14 -51.93 -0.42 1.33 16 35 H 0.09 1.89 7.14 -51.93 -0.37 1.52 16 36 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 307.05 15.07 4.63 4.63 Total: -1.00 -31.30 307.05 -7.59 -38.88 By element: Atomic # 1 Polarization: 10.95 SS G_CDS: -4.58 Total: 6.37 kcal Atomic # 6 Polarization: -17.62 SS G_CDS: -4.14 Total: -21.76 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.79 Total: -44.87 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -4.28 Total: 16.75 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.30 -7.59 -38.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596274778.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.710 kcal (2) G-P(sol) polarization free energy of solvation -31.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.884 kcal (6) G-S(sol) free energy of system = (1) + (5) 151.826 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds