Wall clock time and date at job start Mon Mar 30 2020 01:12:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99722 * 2 1 4 4 H 1.48502 * 109.46793 * 274.58455 * 3 2 1 5 5 H 1.48500 * 109.47166 * 34.58252 * 3 2 1 6 6 H 1.48500 * 109.47020 * 154.58413 * 3 2 1 7 7 C 1.37874 * 120.00405 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99577 * 4.74061 * 7 2 1 9 9 C 1.50697 * 120.00151 * 184.72667 * 7 2 1 10 10 C 1.53001 * 115.54849 * 84.77762 * 9 7 2 11 11 N 1.46507 * 109.47202 * 39.98905 * 10 9 7 12 12 C 1.35046 * 125.93086 * 122.86609 * 11 10 9 13 13 C 1.35058 * 107.99155 * 179.70890 * 12 11 10 14 14 C 1.40879 * 107.85189 * 0.42894 * 13 12 11 15 15 C 1.48344 * 126.04640 * 179.83084 * 14 13 12 16 16 C 1.39340 * 119.72818 * 174.90991 * 15 14 13 17 17 C 1.38379 * 119.06921 * 180.27262 * 16 15 14 18 18 C 1.38800 * 118.51026 * 359.48570 * 17 16 15 19 19 C 1.38225 * 119.37124 * 0.46897 * 18 17 16 20 20 N 1.31780 * 120.89083 * 359.79684 * 19 18 17 21 21 N 1.31663 * 107.91195 * 359.56843 * 14 13 12 22 22 C 1.52997 * 117.52177 * 230.47661 * 9 7 2 23 23 C 1.52998 * 60.00072 * 107.48464 * 22 9 7 24 24 H 0.97003 * 120.00156 * 5.00880 * 1 2 3 25 25 H 1.08994 * 109.47352 * 279.99035 * 10 9 7 26 26 H 1.08994 * 109.47444 * 159.98393 * 10 9 7 27 27 H 1.08001 * 126.00955 * 359.97438 * 12 11 10 28 28 H 1.08005 * 126.08087 * 180.26162 * 13 12 11 29 29 H 1.08003 * 120.47052 * 359.97438 * 16 15 14 30 30 H 1.08000 * 120.74539 * 179.69737 * 17 16 15 31 31 H 1.08005 * 120.31408 * 180.22316 * 18 17 16 32 32 H 1.08004 * 119.55360 * 179.76890 * 19 18 17 33 33 H 1.08998 * 117.50385 * 214.97614 * 22 9 7 34 34 H 1.09004 * 117.49581 * 359.97438 * 22 9 7 35 35 H 1.09001 * 117.49885 * 252.51483 * 23 22 9 36 36 H 1.08996 * 117.49878 * 107.49280 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.3996 2.1024 -1.3956 5 1 1.4983 2.6228 0.7947 6 1 3.5917 1.4143 0.6009 7 6 2.0046 -1.1940 0.0005 8 1 1.4673 -2.1277 -0.0764 9 6 3.5077 -1.1961 0.1081 10 6 4.0676 -1.1275 1.5303 11 7 3.2570 -1.9678 2.4153 12 6 3.7108 -2.9902 3.1720 13 6 2.6616 -3.5070 3.8474 14 6 1.5123 -2.7780 3.4835 15 6 0.1358 -3.0107 3.9852 16 6 -0.8896 -2.1416 3.6180 17 6 -2.1673 -2.3682 4.0985 18 6 -2.3804 -3.4643 4.9230 19 6 -1.3172 -4.2863 5.2463 20 7 -0.1088 -4.0446 4.7794 21 7 1.8769 -1.8499 2.6237 22 6 4.2889 -2.0172 -0.9197 23 6 4.2961 -0.4891 -0.9963 24 1 -0.4850 0.8368 -0.0733 25 1 4.0397 -0.0964 1.8824 26 1 5.0973 -1.4847 1.5331 27 1 4.7337 -3.3316 3.2306 28 1 2.6967 -4.3342 4.5410 29 1 -0.6891 -1.3002 2.9713 30 1 -2.9813 -1.7090 3.8351 31 1 -3.3668 -3.6706 5.3115 32 1 -1.4789 -5.1378 5.8907 33 1 5.2016 -2.5085 -0.5828 34 1 3.7155 -2.5565 -1.6738 35 1 3.7274 -0.0228 -1.8009 36 1 5.2135 0.0248 -0.7096 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596274778.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:12:32 Heat of formation + Delta-G solvation = 131.371618 kcal Electronic energy + Delta-G solvation = -20010.598697 eV Core-core repulsion = 17076.048815 eV Total energy + Delta-G solvation = -2934.549881 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.94379 -40.68220 -38.69594 -34.24616 -34.03630 -33.33040 -31.77588 -30.68413 -28.05502 -27.15191 -24.56338 -24.36287 -23.31468 -21.59515 -21.37377 -20.56342 -18.68024 -17.87747 -17.19704 -16.80440 -16.70292 -16.29796 -16.05522 -15.25388 -14.97118 -14.81879 -14.68270 -14.37028 -14.12778 -13.89700 -13.67857 -13.47585 -13.01887 -12.60915 -12.53661 -12.13443 -12.03485 -11.52875 -11.29195 -10.98950 -10.91887 -10.71738 -10.41485 -10.37730 -10.27932 -9.56132 -9.10265 -8.13119 -6.13311 -0.05763 0.38809 1.29832 1.36427 1.37423 1.46137 1.81771 2.06887 2.43595 3.08319 3.16462 3.24575 3.30100 3.80478 3.85942 4.04741 4.17984 4.21148 4.25539 4.29186 4.34561 4.40495 4.56789 4.74939 4.77602 4.86253 4.93382 5.04075 5.07291 5.07893 5.25596 5.32322 5.40835 5.47962 5.75987 5.77457 5.87037 6.34393 6.49502 6.84351 6.94709 7.13773 7.49680 9.03766 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.020730 B = 0.006809 C = 0.005545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.352730 B = 4111.276028 C = 5048.234767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.940 5.940 2 C 0.036 3.964 3 Si 0.926 3.074 4 H -0.276 1.276 5 H -0.311 1.311 6 H -0.223 1.223 7 C -0.439 4.439 8 H 0.009 0.991 9 C -0.053 4.053 10 C 0.159 3.841 11 N -0.346 5.346 12 C 0.040 3.960 13 C -0.255 4.255 14 C 0.041 3.959 15 C 0.187 3.813 16 C -0.165 4.165 17 C -0.080 4.080 18 C -0.162 4.162 19 C 0.093 3.907 20 N -0.490 5.490 21 N -0.244 5.244 22 C -0.162 4.162 23 C -0.179 4.179 24 H 0.256 0.744 25 H 0.069 0.931 26 H 0.130 0.870 27 H 0.218 0.782 28 H 0.159 0.841 29 H 0.107 0.893 30 H 0.153 0.847 31 H 0.180 0.820 32 H 0.198 0.802 33 H 0.115 0.885 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.996 -5.372 9.416 11.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.581 5.581 2 C -0.162 4.162 3 Si 0.752 3.248 4 H -0.202 1.202 5 H -0.240 1.240 6 H -0.146 1.146 7 C -0.477 4.477 8 H 0.027 0.973 9 C -0.054 4.054 10 C 0.039 3.961 11 N -0.129 5.129 12 C -0.104 4.104 13 C -0.285 4.285 14 C -0.122 4.122 15 C 0.051 3.949 16 C -0.187 4.187 17 C -0.106 4.106 18 C -0.182 4.182 19 C -0.066 4.066 20 N -0.201 5.201 21 N -0.068 5.068 22 C -0.199 4.199 23 C -0.217 4.217 24 H 0.065 0.935 25 H 0.087 0.913 26 H 0.148 0.852 27 H 0.235 0.765 28 H 0.177 0.823 29 H 0.125 0.875 30 H 0.171 0.829 31 H 0.197 0.803 32 H 0.215 0.785 33 H 0.133 0.867 34 H 0.086 0.914 35 H 0.090 0.910 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.306 -4.756 8.873 11.380 hybrid contribution -0.856 0.913 -0.361 1.303 sum 4.451 -3.842 8.512 10.346 Atomic orbital electron populations 1.70080 1.08199 1.27146 1.52653 1.25522 0.94909 1.01758 0.93982 0.86126 0.80973 0.79705 0.78000 1.20238 1.23976 1.14577 1.19883 0.88515 0.91619 1.47711 0.97276 1.19671 0.93110 1.04300 0.88357 1.21744 0.92506 0.93715 0.88174 1.48704 1.04934 1.25872 1.33416 1.23118 1.01722 0.91168 0.94423 1.21528 0.90471 1.06876 1.09615 1.20770 0.93820 0.98787 0.98871 1.18628 0.90396 0.91688 0.94183 1.22173 0.94964 1.00828 1.00748 1.21854 0.95790 0.97946 0.94995 1.22586 1.02400 0.94713 0.98471 1.23436 0.86719 0.99506 0.96890 1.67485 1.25368 1.17331 1.09885 1.78229 0.91773 1.21880 1.14927 1.22949 1.01530 0.93024 1.02367 1.23015 1.01845 0.95397 1.01451 0.93548 0.91254 0.85239 0.76540 0.82336 0.87509 0.82910 0.80304 0.78496 0.86696 0.91444 0.91018 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.64 13.95 21.45 0.30 -59.34 16 2 C 0.04 2.07 5.47 84.65 0.46 2.53 16 3 Si 0.93 44.39 25.19 68.60 1.73 46.12 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 5 H -0.31 -15.66 7.11 99.48 0.71 -14.96 16 6 H -0.22 -9.21 5.24 99.48 0.52 -8.69 16 7 C -0.44 -24.86 7.03 25.60 0.18 -24.68 16 8 H 0.01 0.61 8.06 -2.91 -0.02 0.59 16 9 C -0.05 -2.27 1.19 -52.93 -0.06 -2.33 16 10 C 0.16 5.83 6.43 86.38 0.56 6.38 16 11 N -0.35 -14.28 3.58 -348.19 -1.25 -15.53 16 12 C 0.04 1.32 11.42 83.47 0.95 2.28 16 13 C -0.26 -9.56 10.54 22.18 0.23 -9.33 16 14 C 0.04 1.89 7.01 42.51 0.30 2.18 16 15 C 0.19 8.03 6.75 41.98 0.28 8.31 16 16 C -0.17 -7.05 9.73 22.57 0.22 -6.83 16 17 C -0.08 -2.54 10.17 22.44 0.23 -2.31 16 18 C -0.16 -3.91 10.11 22.40 0.23 -3.68 16 19 C 0.09 2.46 11.17 84.70 0.95 3.40 16 20 N -0.49 -17.66 10.08 -184.85 -1.86 -19.53 16 21 N -0.24 -12.27 10.03 -48.17 -0.48 -12.75 16 22 C -0.16 -5.78 9.88 30.59 0.30 -5.48 16 23 C -0.18 -6.52 7.34 30.59 0.22 -6.30 16 24 H 0.26 15.45 8.32 -92.71 -0.77 14.68 16 25 H 0.07 2.61 6.64 -2.39 -0.02 2.59 16 26 H 0.13 3.28 7.87 -2.39 -0.02 3.26 16 27 H 0.22 4.54 8.06 -2.91 -0.02 4.51 16 28 H 0.16 5.18 8.06 -2.91 -0.02 5.16 16 29 H 0.11 5.46 7.85 -2.91 -0.02 5.44 16 30 H 0.15 4.05 8.06 -2.91 -0.02 4.02 16 31 H 0.18 2.56 8.06 -2.91 -0.02 2.54 16 32 H 0.20 3.30 8.06 -2.91 -0.02 3.28 16 33 H 0.11 3.14 8.08 -2.39 -0.02 3.12 16 34 H 0.07 2.66 8.14 -2.38 -0.02 2.64 16 35 H 0.07 2.88 7.14 -2.39 -0.02 2.87 16 36 H 0.11 3.27 8.14 -2.39 -0.02 3.25 16 Total: -1.00 -79.06 307.05 4.37 -74.68 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: 0.89 Total: 22.18 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 5.05 Total: -35.85 kcal Atomic # 7 Polarization: -103.85 SS G_CDS: -3.29 Total: -107.14 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 1.73 Total: 46.12 kcal Total: -79.06 4.37 -74.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596274778.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.055 kcal (2) G-P(sol) polarization free energy of solvation -79.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds