Wall clock time and date at job start Mon Mar 30 2020 01:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47468 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.46991 * 119.99898 * 3 2 1 6 6 H 1.48497 * 109.47338 * 239.99818 * 3 2 1 7 7 C 1.37869 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99831 * 185.42665 * 7 2 1 9 9 C 1.50703 * 120.00239 * 5.42750 * 7 2 1 10 10 C 1.52995 * 115.55167 * 279.44022 * 9 7 2 11 11 N 1.46500 * 109.46979 * 295.26178 * 10 9 7 12 12 C 1.34518 * 126.74273 * 123.98094 * 11 10 9 13 13 N 1.30682 * 108.29890 * 179.83404 * 12 11 10 14 14 C 1.33986 * 109.77215 * 0.43841 * 13 12 11 15 15 C 1.48407 * 125.64467 * 179.69394 * 14 13 12 16 16 C 1.39337 * 120.11476 * 179.76693 * 15 14 13 17 17 C 1.38019 * 119.87472 * 179.74466 * 16 15 14 18 18 C 1.38324 * 120.12146 * 0.50767 * 17 16 15 19 19 C 1.38325 * 120.24221 * 359.76466 * 18 17 16 20 20 C 1.38020 * 120.11974 * 359.97438 * 19 18 17 21 21 N 1.31491 * 108.70202 * 359.72480 * 14 13 12 22 22 C 1.53003 * 117.49900 * 133.72876 * 9 7 2 23 23 C 1.53002 * 60.00302 * 252.51496 * 22 9 7 24 24 H 0.97000 * 120.00053 * 355.27348 * 1 2 3 25 25 H 1.09000 * 109.47083 * 55.26238 * 10 9 7 26 26 H 1.09004 * 109.47049 * 175.26604 * 10 9 7 27 27 H 1.08000 * 125.85243 * 359.97438 * 12 11 10 28 28 H 1.08001 * 120.06011 * 359.97438 * 16 15 14 29 29 H 1.08000 * 119.94083 * 180.25524 * 17 16 15 30 30 H 1.08005 * 119.88029 * 179.75117 * 18 17 16 31 31 H 1.07990 * 119.93834 * 179.97438 * 19 18 17 32 32 H 1.07993 * 120.06228 * 180.02562 * 20 19 18 33 33 H 1.09005 * 117.50001 * 0.02562 * 22 9 7 34 34 H 1.08999 * 117.50084 * 145.02565 * 22 9 7 35 35 H 1.08996 * 117.49628 * 252.51788 * 23 22 9 36 36 H 1.09002 * 117.50160 * 107.48729 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0808 -1.1961 0.0890 9 6 1.2560 -2.4963 -0.1223 10 6 0.6211 -3.0168 1.1687 11 7 1.6740 -3.3414 2.1343 12 6 1.7987 -2.8556 3.3825 13 7 2.8616 -3.3876 3.9255 14 6 3.4517 -4.2142 3.0515 15 6 4.6876 -4.9971 3.3005 16 6 5.2005 -5.8285 2.3070 17 6 6.3532 -6.5504 2.5420 18 6 6.9932 -6.4576 3.7647 19 6 6.4852 -5.6380 4.7565 20 6 5.3362 -4.9076 4.5304 21 7 2.7547 -4.2161 1.9365 22 6 1.7961 -3.5309 -1.1117 23 6 0.5125 -2.7628 -1.4328 24 1 -0.4850 0.8372 0.0692 25 1 -0.0320 -2.2509 1.5869 26 1 0.0386 -3.9122 0.9517 27 1 1.1330 -2.1490 3.8557 28 1 4.6991 -5.9051 1.3535 29 1 6.7540 -7.1920 1.7712 30 1 7.8927 -7.0272 3.9458 31 1 6.9886 -5.5696 5.7095 32 1 4.9406 -4.2677 5.3052 33 1 2.6931 -3.2698 -1.6734 34 1 1.6993 -4.5828 -0.8429 35 1 -0.4288 -3.3093 -1.3750 36 1 0.5646 -1.9962 -2.2059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596281610.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:38 Heat of formation + Delta-G solvation = 134.950591 kcal Electronic energy + Delta-G solvation = -19585.426174 eV Core-core repulsion = 16651.031489 eV Total energy + Delta-G solvation = -2934.394685 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.35618 -38.75759 -36.83995 -33.06737 -32.10524 -31.41173 -30.75669 -29.79734 -26.53255 -25.43356 -23.09908 -22.62721 -21.29619 -20.92681 -20.05573 -19.28187 -17.08501 -16.44309 -15.69105 -15.14224 -14.88165 -14.82688 -14.70989 -13.99680 -13.58515 -13.26482 -13.23799 -13.20278 -12.58522 -12.17323 -11.90070 -11.28584 -11.17145 -11.06023 -10.95393 -10.89452 -10.63561 -10.33606 -10.02435 -9.51619 -9.44882 -9.14167 -8.92774 -8.81165 -8.60577 -8.29319 -8.06397 -6.20490 -4.26392 1.17856 1.54560 2.44545 3.07556 3.22753 3.27208 3.32022 3.43312 4.19993 4.29203 4.44840 4.91452 5.05544 5.07856 5.14040 5.23017 5.36181 5.49841 5.61556 5.73352 5.86666 5.97804 6.07022 6.16478 6.24227 6.35343 6.47083 6.51951 6.60151 6.72455 6.78972 6.90339 6.96917 6.99661 7.10842 7.21278 7.35364 7.59152 7.73865 8.26020 8.69765 8.76162 9.40904 10.87819 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022079 B = 0.005075 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.896808 B = 5515.926123 C = 5802.262030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.285 1.285 5 H -0.276 1.276 6 H -0.276 1.276 7 C -0.490 4.490 8 H 0.056 0.944 9 C 0.029 3.971 10 C 0.163 3.837 11 N -0.331 5.331 12 C 0.253 3.747 13 N -0.551 5.551 14 C 0.227 3.773 15 C 0.008 3.992 16 C -0.089 4.089 17 C -0.126 4.126 18 C -0.118 4.118 19 C -0.128 4.128 20 C -0.084 4.084 21 N -0.288 5.288 22 C -0.189 4.189 23 C -0.154 4.154 24 H 0.263 0.737 25 H 0.108 0.892 26 H 0.060 0.940 27 H 0.212 0.788 28 H 0.131 0.869 29 H 0.123 0.877 30 H 0.120 0.880 31 H 0.123 0.877 32 H 0.133 0.867 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.065 0.935 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.741 -9.322 6.454 12.709 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.211 1.211 5 H -0.202 1.202 6 H -0.201 1.201 7 C -0.527 4.527 8 H 0.074 0.926 9 C 0.028 3.972 10 C 0.042 3.958 11 N -0.119 5.119 12 C -0.043 4.043 13 N -0.279 5.279 14 C -0.052 4.052 15 C 0.006 3.994 16 C -0.110 4.110 17 C -0.144 4.144 18 C -0.137 4.137 19 C -0.146 4.146 20 C -0.104 4.104 21 N -0.118 5.118 22 C -0.227 4.227 23 C -0.193 4.193 24 H 0.073 0.927 25 H 0.126 0.874 26 H 0.079 0.921 27 H 0.229 0.771 28 H 0.149 0.851 29 H 0.141 0.859 30 H 0.138 0.862 31 H 0.141 0.859 32 H 0.151 0.849 33 H 0.095 0.905 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 5.705 -9.475 6.014 12.589 hybrid contribution 0.052 1.370 -0.098 1.374 sum 5.757 -8.105 5.916 11.569 Atomic orbital electron populations 1.69922 1.05773 1.27203 1.49049 1.24954 0.94865 0.98913 0.94249 0.86677 0.79741 0.82898 0.78929 1.21080 1.20183 1.20109 1.20324 0.92769 0.88395 1.51239 0.92551 1.18922 0.98545 0.94261 0.85499 1.21691 0.85135 0.98780 0.90153 1.50484 1.19646 1.29981 1.11786 1.25750 0.96138 0.98059 0.84398 1.70360 1.09320 1.14929 1.33298 1.22109 0.96653 0.97827 0.88598 1.17521 0.91202 0.96069 0.94656 1.21258 0.95708 0.95016 0.98974 1.21036 0.95784 1.00174 0.97383 1.21194 0.99807 0.98999 0.93738 1.21051 0.96517 0.97627 0.99386 1.21223 0.94577 0.98282 0.96329 1.78126 0.99091 1.13717 1.20907 1.22866 0.97495 0.95792 1.06513 1.22616 0.93256 1.01737 1.01655 0.92692 0.87364 0.92133 0.77149 0.85132 0.85890 0.86245 0.85922 0.84896 0.90509 0.91193 0.91637 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.04 13.10 55.43 0.73 -22.32 16 2 C 0.07 1.91 5.42 -17.82 -0.10 1.81 16 3 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 4 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.49 -12.86 8.71 -34.44 -0.30 -13.16 16 8 H 0.06 1.58 7.82 -52.49 -0.41 1.17 16 9 C 0.03 0.67 1.39 -155.65 -0.22 0.46 16 10 C 0.16 3.37 6.37 -4.04 -0.03 3.35 16 11 N -0.33 -6.79 3.58 -62.64 -0.22 -7.02 16 12 C 0.25 4.75 12.61 -90.70 -1.14 3.61 16 13 N -0.55 -10.81 10.82 -12.38 -0.13 -10.94 16 14 C 0.23 4.52 7.78 -156.62 -1.22 3.30 16 15 C 0.01 0.14 5.88 -104.89 -0.62 -0.48 16 16 C -0.09 -1.36 9.68 -39.25 -0.38 -1.74 16 17 C -0.13 -1.54 10.03 -39.63 -0.40 -1.94 16 18 C -0.12 -1.33 10.04 -39.52 -0.40 -1.72 16 19 C -0.13 -1.52 10.03 -39.63 -0.40 -1.92 16 20 C -0.08 -1.23 9.69 -39.26 -0.38 -1.61 16 21 N -0.29 -6.09 12.21 32.10 0.39 -5.69 16 22 C -0.19 -4.09 9.96 -26.73 -0.27 -4.36 16 23 C -0.15 -3.39 9.67 -26.73 -0.26 -3.65 16 24 H 0.26 6.64 8.32 -40.82 -0.34 6.30 16 25 H 0.11 2.25 8.08 -51.93 -0.42 1.83 16 26 H 0.06 1.14 8.10 -51.93 -0.42 0.72 16 27 H 0.21 3.12 8.06 -52.49 -0.42 2.70 16 28 H 0.13 2.03 7.83 -52.49 -0.41 1.62 16 29 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 30 H 0.12 1.00 8.06 -52.48 -0.42 0.57 16 31 H 0.12 1.13 8.06 -52.49 -0.42 0.70 16 32 H 0.13 1.92 7.84 -52.49 -0.41 1.51 16 33 H 0.08 1.70 8.14 -51.93 -0.42 1.28 16 34 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.08 1.97 8.14 -51.93 -0.42 1.54 16 LS Contribution 320.62 15.07 4.83 4.83 Total: -1.00 -29.07 320.62 -10.12 -39.19 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -4.59 Total: 4.35 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: -6.09 Total: -18.06 kcal Atomic # 7 Polarization: -46.73 SS G_CDS: 0.76 Total: -45.97 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -29.07 -10.12 -39.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596281610.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.136 kcal (2) G-P(sol) polarization free energy of solvation -29.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.185 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds