Wall clock time and date at job start Mon Mar 30 2020 01:07:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86792 * 119.99963 * 2 1 4 4 H 1.48502 * 109.47468 * 359.97438 * 3 2 1 5 5 H 1.48502 * 109.46991 * 119.99898 * 3 2 1 6 6 H 1.48497 * 109.47338 * 239.99818 * 3 2 1 7 7 C 1.37869 * 119.99734 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99831 * 185.42665 * 7 2 1 9 9 C 1.50703 * 120.00239 * 5.42750 * 7 2 1 10 10 C 1.52995 * 115.55167 * 279.44022 * 9 7 2 11 11 N 1.46500 * 109.46979 * 295.26178 * 10 9 7 12 12 C 1.34518 * 126.74273 * 123.98094 * 11 10 9 13 13 N 1.30682 * 108.29890 * 179.83404 * 12 11 10 14 14 C 1.33986 * 109.77215 * 0.43841 * 13 12 11 15 15 C 1.48407 * 125.64467 * 179.69394 * 14 13 12 16 16 C 1.39337 * 120.11476 * 179.76693 * 15 14 13 17 17 C 1.38019 * 119.87472 * 179.74466 * 16 15 14 18 18 C 1.38324 * 120.12146 * 0.50767 * 17 16 15 19 19 C 1.38325 * 120.24221 * 359.76466 * 18 17 16 20 20 C 1.38020 * 120.11974 * 359.97438 * 19 18 17 21 21 N 1.31491 * 108.70202 * 359.72480 * 14 13 12 22 22 C 1.53003 * 117.49900 * 133.72876 * 9 7 2 23 23 C 1.53002 * 60.00302 * 252.51496 * 22 9 7 24 24 H 0.97000 * 120.00053 * 355.27348 * 1 2 3 25 25 H 1.09000 * 109.47083 * 55.26238 * 10 9 7 26 26 H 1.09004 * 109.47049 * 175.26604 * 10 9 7 27 27 H 1.08000 * 125.85243 * 359.97438 * 12 11 10 28 28 H 1.08001 * 120.06011 * 359.97438 * 16 15 14 29 29 H 1.08000 * 119.94083 * 180.25524 * 17 16 15 30 30 H 1.08005 * 119.88029 * 179.75117 * 18 17 16 31 31 H 1.07990 * 119.93834 * 179.97438 * 19 18 17 32 32 H 1.07993 * 120.06228 * 180.02562 * 20 19 18 33 33 H 1.09005 * 117.50001 * 0.02562 * 22 9 7 34 34 H 1.08999 * 117.50084 * 145.02565 * 22 9 7 35 35 H 1.08996 * 117.49628 * 252.51788 * 23 22 9 36 36 H 1.09002 * 117.50160 * 107.48729 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6963 1.2125 6 1 3.1029 1.6964 -1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0808 -1.1961 0.0890 9 6 1.2560 -2.4963 -0.1223 10 6 0.6211 -3.0168 1.1687 11 7 1.6740 -3.3414 2.1343 12 6 1.7987 -2.8556 3.3825 13 7 2.8616 -3.3876 3.9255 14 6 3.4517 -4.2142 3.0515 15 6 4.6876 -4.9971 3.3005 16 6 5.2005 -5.8285 2.3070 17 6 6.3532 -6.5504 2.5420 18 6 6.9932 -6.4576 3.7647 19 6 6.4852 -5.6380 4.7565 20 6 5.3362 -4.9076 4.5304 21 7 2.7547 -4.2161 1.9365 22 6 1.7961 -3.5309 -1.1117 23 6 0.5125 -2.7628 -1.4328 24 1 -0.4850 0.8372 0.0692 25 1 -0.0320 -2.2509 1.5869 26 1 0.0386 -3.9122 0.9517 27 1 1.1330 -2.1490 3.8557 28 1 4.6991 -5.9051 1.3535 29 1 6.7540 -7.1920 1.7712 30 1 7.8927 -7.0272 3.9458 31 1 6.9886 -5.5696 5.7095 32 1 4.9406 -4.2677 5.3052 33 1 2.6931 -3.2698 -1.6734 34 1 1.6993 -4.5828 -0.8429 35 1 -0.4288 -3.3093 -1.3750 36 1 0.5646 -1.9962 -2.2059 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596281610.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:07:38 Heat of formation + Delta-G solvation = 122.266682 kcal Electronic energy + Delta-G solvation = -19585.976190 eV Core-core repulsion = 16651.031489 eV Total energy + Delta-G solvation = -2934.944701 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.83701 -39.81266 -38.59657 -34.55072 -34.06201 -32.75571 -31.81512 -31.11781 -28.17733 -27.30643 -24.33640 -23.80650 -22.98698 -22.35730 -21.41329 -21.03578 -18.51746 -18.03016 -17.04570 -16.69724 -16.61436 -16.22645 -15.98812 -15.57050 -14.98223 -14.88812 -14.39520 -14.24317 -13.94404 -13.79348 -13.54225 -13.08752 -12.95172 -12.61741 -12.48174 -12.21178 -12.11951 -11.96190 -11.73664 -11.02691 -10.97806 -10.85665 -10.64898 -10.45050 -10.08933 -9.83372 -9.34118 -8.19651 -6.29937 0.03021 0.52337 1.00659 1.34956 1.37986 1.44071 1.58353 2.10449 2.36156 3.04091 3.08122 3.15154 3.40780 3.70143 4.04461 4.12034 4.17293 4.17947 4.32164 4.43647 4.49306 4.58342 4.61383 4.71295 4.88665 4.95583 4.97256 5.16545 5.19503 5.30405 5.44622 5.47407 5.56744 5.60669 5.64779 5.67911 5.70799 6.07641 6.10876 6.32597 6.71246 7.20218 7.38419 8.87412 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022079 B = 0.005075 C = 0.004825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.896808 B = 5515.926123 C = 5802.262030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.044 3.956 3 Si 0.937 3.063 4 H -0.274 1.274 5 H -0.281 1.281 6 H -0.280 1.280 7 C -0.505 4.505 8 H 0.026 0.974 9 C 0.008 3.992 10 C 0.174 3.826 11 N -0.345 5.345 12 C 0.251 3.749 13 N -0.564 5.564 14 C 0.224 3.776 15 C -0.031 4.031 16 C -0.105 4.105 17 C -0.123 4.123 18 C -0.105 4.105 19 C -0.122 4.122 20 C -0.094 4.094 21 N -0.320 5.320 22 C -0.178 4.178 23 C -0.147 4.147 24 H 0.266 0.734 25 H 0.105 0.895 26 H 0.078 0.922 27 H 0.245 0.755 28 H 0.115 0.885 29 H 0.151 0.849 30 H 0.160 0.840 31 H 0.156 0.844 32 H 0.127 0.873 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.916 -10.275 7.458 14.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.158 4.158 3 Si 0.763 3.237 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.206 1.206 7 C -0.542 4.542 8 H 0.044 0.956 9 C 0.007 3.993 10 C 0.053 3.947 11 N -0.133 5.133 12 C -0.045 4.045 13 N -0.292 5.292 14 C -0.055 4.055 15 C -0.033 4.033 16 C -0.125 4.125 17 C -0.141 4.141 18 C -0.123 4.123 19 C -0.140 4.140 20 C -0.114 4.114 21 N -0.149 5.149 22 C -0.215 4.215 23 C -0.185 4.185 24 H 0.076 0.924 25 H 0.123 0.877 26 H 0.096 0.904 27 H 0.260 0.740 28 H 0.134 0.866 29 H 0.169 0.831 30 H 0.178 0.822 31 H 0.174 0.826 32 H 0.145 0.855 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.874 -10.431 7.012 14.326 hybrid contribution -0.188 1.607 -0.372 1.660 sum 6.686 -8.824 6.639 12.909 Atomic orbital electron populations 1.69956 1.06175 1.27790 1.49093 1.25378 0.95560 1.00773 0.94071 0.85961 0.78850 0.80638 0.78233 1.19888 1.20721 1.20624 1.20318 0.91546 0.90371 1.51999 0.95562 1.19009 0.99391 0.93778 0.87089 1.21491 0.85029 0.99293 0.88916 1.50463 1.19883 1.30661 1.12286 1.26488 0.96202 0.97809 0.83990 1.70397 1.09795 1.15432 1.33585 1.22778 0.97189 0.97428 0.88110 1.17751 0.91335 0.97754 0.96486 1.21287 0.97110 0.95938 0.98200 1.21385 0.94462 0.99485 0.98793 1.21682 1.00307 0.97841 0.92517 1.21444 0.95198 0.96337 1.00992 1.21310 0.95706 0.99058 0.95351 1.78063 0.99952 1.14942 1.21990 1.22777 0.96904 0.96222 1.05622 1.22558 0.94291 1.01333 1.00325 0.92447 0.87663 0.90416 0.73961 0.86641 0.83133 0.82233 0.82641 0.85480 0.91740 0.89815 0.89388 0.91728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -46.30 13.10 21.44 0.28 -46.02 16 2 C 0.04 2.31 5.42 84.65 0.46 2.76 16 3 Si 0.94 42.58 29.54 68.60 2.03 44.61 16 4 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 5 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 6 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 7 C -0.50 -27.01 8.71 25.60 0.22 -26.79 16 8 H 0.03 1.53 7.82 -2.91 -0.02 1.50 16 9 C 0.01 0.39 1.39 -52.92 -0.07 0.32 16 10 C 0.17 7.16 6.37 86.38 0.55 7.71 16 11 N -0.34 -14.31 3.58 -352.10 -1.26 -15.57 16 12 C 0.25 9.46 12.61 180.38 2.27 11.74 16 13 N -0.56 -22.42 10.82 -193.09 -2.09 -24.51 16 14 C 0.22 9.15 7.78 137.47 1.07 10.21 16 15 C -0.03 -1.05 5.88 -20.04 -0.12 -1.17 16 16 C -0.11 -3.19 9.68 22.48 0.22 -2.97 16 17 C -0.12 -2.74 10.03 22.24 0.22 -2.51 16 18 C -0.10 -1.94 10.04 22.31 0.22 -1.72 16 19 C -0.12 -2.54 10.03 22.24 0.22 -2.31 16 20 C -0.09 -2.69 9.69 22.48 0.22 -2.47 16 21 N -0.32 -13.85 12.21 -52.35 -0.64 -14.49 16 22 C -0.18 -7.74 9.96 30.60 0.30 -7.43 16 23 C -0.15 -6.42 9.67 30.60 0.30 -6.13 16 24 H 0.27 13.23 8.32 -92.71 -0.77 12.46 16 25 H 0.11 4.35 8.08 -2.39 -0.02 4.33 16 26 H 0.08 2.88 8.10 -2.39 -0.02 2.86 16 27 H 0.24 7.02 8.06 -2.91 -0.02 6.99 16 28 H 0.12 3.74 7.83 -2.91 -0.02 3.72 16 29 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 30 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 31 H 0.16 2.19 8.06 -2.92 -0.02 2.16 16 32 H 0.13 3.67 7.84 -2.91 -0.02 3.65 16 33 H 0.06 2.92 8.14 -2.38 -0.02 2.90 16 34 H 0.08 3.38 8.14 -2.39 -0.02 3.37 16 35 H 0.09 3.42 8.14 -2.39 -0.02 3.40 16 36 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 Total: -1.00 -63.35 320.62 5.48 -57.87 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: 1.07 Total: 18.88 kcal Atomic # 6 Polarization: -26.86 SS G_CDS: 6.09 Total: -20.77 kcal Atomic # 7 Polarization: -96.88 SS G_CDS: -3.71 Total: -100.59 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.61 kcal Total: -63.35 5.48 -57.87 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596281610.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.142 kcal (2) G-P(sol) polarization free energy of solvation -63.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.875 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds