Wall clock time and date at job start Mon Mar 30 2020 01:00:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13598 * 1 3 3 C 1.43204 * 179.97438 * 2 1 4 4 C 1.39910 * 120.63489 * 215.70113 * 3 2 1 5 5 C 1.38228 * 118.60468 * 179.97438 * 4 3 2 6 6 C 1.38517 * 119.28267 * 0.04083 * 5 4 3 7 7 N 1.31840 * 121.26434 * 359.95820 * 6 5 4 8 8 C 1.32380 * 121.85799 * 0.03068 * 7 6 5 9 9 N 1.38404 * 119.86683 * 180.02562 * 8 7 6 10 10 C 1.47481 * 110.99917 * 95.97092 * 9 8 7 11 11 C 1.53510 * 87.93329 * 221.29534 * 10 9 8 12 12 C 1.50701 * 114.17097 * 139.67095 * 11 10 9 13 13 H 1.07997 * 120.00365 * 266.16185 * 12 11 10 14 14 C 1.37879 * 119.99973 * 86.15518 * 12 11 10 15 15 N 1.31517 * 120.00215 * 0.02562 * 14 12 11 16 16 Si 1.86797 * 120.00117 * 179.97438 * 14 12 11 17 17 H 1.48495 * 109.47125 * 90.00245 * 16 14 12 18 18 H 1.48499 * 109.47472 * 210.00349 * 16 14 12 19 19 H 1.48504 * 109.46986 * 330.00691 * 16 14 12 20 20 C 1.47480 * 111.00314 * 0.02562 * 9 8 7 21 21 C 1.51254 * 109.66447 * 180.02562 * 5 4 3 22 22 C 1.54392 * 105.28876 * 342.85991 * 21 5 4 23 23 C 1.51055 * 131.43634 * 359.97438 * 4 3 2 24 24 H 1.07995 * 119.37019 * 179.97438 * 6 5 4 25 25 H 1.09003 * 113.47933 * 336.06393 * 10 9 8 26 26 H 1.09011 * 113.47783 * 106.52465 * 10 9 8 27 27 H 1.09006 * 114.34407 * 272.36062 * 11 10 9 28 28 H 0.96992 * 120.00142 * 179.97438 * 15 14 12 29 29 H 1.09008 * 113.47174 * 253.47003 * 20 9 8 30 30 H 1.08998 * 113.47511 * 23.86599 * 20 9 8 31 31 H 1.09002 * 110.29604 * 101.84361 * 21 5 4 32 32 H 1.09002 * 110.29814 * 223.88232 * 21 5 4 33 33 H 1.09003 * 110.81513 * 144.43886 * 22 21 5 34 34 H 1.08997 * 110.82049 * 267.98163 * 22 21 5 35 35 H 1.08994 * 110.31151 * 315.94662 * 23 4 3 36 36 H 1.09005 * 110.30720 * 78.11618 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2805 0.9786 0.7025 5 6 4.6619 0.9391 0.6744 6 6 5.2967 -0.0604 -0.0445 7 7 4.6086 -0.9738 -0.7006 8 6 3.2848 -0.9812 -0.7059 9 7 2.6039 -1.9601 -1.4085 10 6 2.2192 -3.0752 -0.5232 11 6 2.6183 -4.0359 -1.6520 12 6 3.3445 -5.2705 -1.1837 13 1 4.4242 -5.2878 -1.1656 14 6 2.6305 -6.3781 -0.7780 15 7 1.3157 -6.3573 -0.8002 16 14 3.5306 -7.9087 -0.1981 17 1 3.7557 -7.8253 1.2673 18 1 2.7136 -9.1100 -0.5058 19 1 4.8383 -8.0077 -0.8949 20 6 3.5425 -2.8846 -2.0713 21 6 5.2206 2.0803 1.4949 22 6 4.0485 3.0706 1.6661 23 6 2.8150 2.1457 1.5408 24 1 6.3759 -0.0924 -0.0678 25 1 2.8472 -3.1623 0.3635 26 1 1.1545 -3.0973 -0.2901 27 1 1.8203 -4.2497 -2.3631 28 1 0.8134 -7.1366 -0.5152 29 1 3.5997 -2.7451 -3.1509 30 1 4.5239 -2.9200 -1.5984 31 1 5.5551 1.7186 2.4673 32 1 6.0451 2.5583 0.9659 33 1 4.0814 3.5438 2.6475 34 1 4.0545 3.8188 0.8735 35 1 1.9996 2.6689 1.0413 36 1 2.4980 1.8018 2.5254 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596432623.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:00:29 Heat of formation + Delta-G solvation = 88.847531 kcal Electronic energy + Delta-G solvation = -19708.329804 eV Core-core repulsion = 16771.935941 eV Total energy + Delta-G solvation = -2936.393864 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.47451 -40.54602 -37.73453 -37.33749 -34.78960 -33.34760 -31.45107 -29.91099 -28.20735 -26.88974 -26.14793 -25.02957 -22.55685 -21.93247 -20.52676 -19.36819 -18.92696 -18.22960 -17.48070 -16.68914 -16.46026 -16.18288 -15.49181 -15.44662 -14.81264 -14.62051 -14.11607 -14.10907 -14.03637 -14.01334 -13.61851 -13.24859 -13.16502 -12.95632 -12.82797 -12.58318 -12.35274 -12.04716 -11.93730 -11.89196 -11.38784 -11.05526 -10.89458 -10.57817 -10.51431 -10.33941 -9.33219 -8.18227 -6.30619 -0.47574 0.06897 1.43277 1.44211 1.53070 1.55544 1.86627 2.40620 2.58979 2.76231 2.79322 3.09842 3.30767 3.52243 3.59583 3.87030 4.03936 4.17516 4.22235 4.30431 4.35753 4.41320 4.67364 4.69841 4.82347 4.85732 4.86134 4.94241 5.01365 5.04035 5.11068 5.21493 5.23895 5.40460 5.51308 5.58057 5.78077 6.20264 6.23401 6.36391 6.79037 6.84374 7.38883 8.91802 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.026048 B = 0.004895 C = 0.004508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.684522 B = 5718.851739 C = 6209.324310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C 0.284 3.716 3 C -0.098 4.098 4 C -0.002 4.002 5 C -0.165 4.165 6 C 0.161 3.839 7 N -0.526 5.526 8 C 0.313 3.687 9 N -0.457 5.457 10 C 0.041 3.959 11 C 0.026 3.974 12 C -0.525 4.525 13 H 0.066 0.934 14 C 0.014 3.986 15 N -0.924 5.924 16 Si 0.962 3.038 17 H -0.275 1.275 18 H -0.285 1.285 19 H -0.260 1.260 20 C 0.029 3.971 21 C -0.066 4.066 22 C -0.109 4.109 23 C -0.094 4.094 24 H 0.198 0.802 25 H 0.057 0.943 26 H 0.045 0.955 27 H 0.034 0.966 28 H 0.263 0.737 29 H 0.075 0.925 30 H 0.097 0.903 31 H 0.101 0.899 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.664 19.203 6.988 23.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.133 5.133 2 C -0.031 4.031 3 C -0.106 4.106 4 C -0.012 4.012 5 C -0.168 4.168 6 C 0.002 3.998 7 N -0.238 5.238 8 C 0.080 3.920 9 N -0.176 5.176 10 C -0.085 4.085 11 C 0.006 3.994 12 C -0.563 4.563 13 H 0.085 0.915 14 C -0.185 4.185 15 N -0.563 5.563 16 Si 0.787 3.213 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.184 1.184 20 C -0.098 4.098 21 C -0.103 4.103 22 C -0.146 4.146 23 C -0.131 4.131 24 H 0.215 0.785 25 H 0.076 0.924 26 H 0.064 0.936 27 H 0.053 0.947 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.123 0.877 33 H 0.125 0.875 34 H 0.102 0.898 35 H 0.097 0.903 36 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 9.654 18.805 6.154 22.016 hybrid contribution 0.009 -1.010 0.745 1.255 sum 9.663 17.795 6.899 21.392 Atomic orbital electron populations 1.81144 1.12813 1.09272 1.10035 1.25502 0.92576 0.92546 0.92469 1.16240 0.84711 1.01247 1.08396 1.21179 0.94976 0.93283 0.91725 1.21880 0.93387 1.00317 1.01174 1.23012 1.01842 0.86772 0.88173 1.67905 1.06302 1.26590 1.22988 1.20554 0.88786 0.92851 0.89812 1.66193 1.27219 1.06332 1.17816 1.23832 0.98851 0.88806 0.97015 1.20089 0.94554 0.91885 0.92835 1.21299 0.93255 0.98159 1.43629 0.91539 1.25892 0.95462 1.01839 0.95311 1.70107 1.07065 1.31167 1.47934 0.85494 0.78846 0.78327 0.78665 1.20038 1.21055 1.18443 1.23830 0.96695 0.89948 0.99373 1.21076 0.98979 0.90943 0.99330 1.22428 0.91031 0.96565 1.04595 1.21395 1.00696 0.92122 0.98861 0.78486 0.92428 0.93621 0.94730 0.92787 0.90639 0.88514 0.88049 0.87709 0.87494 0.89817 0.90253 0.88194 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -18.59 18.54 19.00 0.35 -18.24 16 2 C 0.28 10.62 14.45 88.33 1.28 11.90 16 3 C -0.10 -3.24 5.76 -21.06 -0.12 -3.36 16 4 C 0.00 -0.04 6.07 -19.35 -0.12 -0.15 16 5 C -0.16 -3.07 6.18 -19.62 -0.12 -3.19 16 6 C 0.16 3.55 11.17 84.76 0.95 4.50 16 7 N -0.53 -17.04 8.18 -192.29 -1.57 -18.61 16 8 C 0.31 11.63 5.86 133.63 0.78 12.42 16 9 N -0.46 -19.99 5.85 -731.56 -4.28 -24.26 16 10 C 0.04 2.03 6.98 83.53 0.58 2.61 16 11 C 0.03 1.34 3.77 -11.21 -0.04 1.30 16 12 C -0.53 -28.82 8.82 25.60 0.23 -28.59 16 13 H 0.07 3.51 7.81 -2.91 -0.02 3.48 16 14 C 0.01 0.80 5.46 84.65 0.46 1.26 16 15 N -0.92 -54.99 13.26 21.45 0.28 -54.70 16 16 Si 0.96 43.18 29.54 68.60 2.03 45.20 16 17 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 18 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 19 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 20 C 0.03 1.27 6.94 83.52 0.58 1.85 16 21 C -0.07 -0.59 6.76 30.50 0.21 -0.39 16 22 C -0.11 -0.92 7.10 31.64 0.22 -0.69 16 23 C -0.09 -1.48 6.53 30.53 0.20 -1.28 16 24 H 0.20 2.71 8.06 -2.91 -0.02 2.68 16 25 H 0.06 2.83 7.85 -2.39 -0.02 2.81 16 26 H 0.05 2.41 8.14 -2.38 -0.02 2.40 16 27 H 0.03 2.01 8.11 -2.38 -0.02 1.99 16 28 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.08 3.12 8.14 -2.38 -0.02 3.10 16 30 H 0.10 4.13 6.61 -2.39 -0.02 4.12 16 31 H 0.10 0.67 8.14 -2.39 -0.02 0.65 16 32 H 0.10 0.54 8.14 -2.39 -0.02 0.52 16 33 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 34 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 Total: -1.00 -69.50 310.41 2.99 -66.51 By element: Atomic # 1 Polarization: 4.82 SS G_CDS: 1.09 Total: 5.92 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 5.08 Total: -1.81 kcal Atomic # 7 Polarization: -110.61 SS G_CDS: -5.21 Total: -115.82 kcal Atomic # 14 Polarization: 43.18 SS G_CDS: 2.03 Total: 45.20 kcal Total: -69.50 2.99 -66.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596432623.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.360 kcal (2) G-P(sol) polarization free energy of solvation -69.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.512 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds