Wall clock time and date at job start Mon Mar 30 2020 00:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47257 * 2 1 4 4 C 1.46500 * 120.00020 * 90.00257 * 3 2 1 5 5 C 1.50706 * 109.46949 * 89.99910 * 4 3 2 6 6 H 1.07995 * 120.00167 * 359.72205 * 5 4 3 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47405 * 60.00219 * 9 7 5 11 11 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 13 13 C 1.34777 * 119.99857 * 269.99930 * 3 2 1 14 14 O 1.21284 * 120.00042 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00130 * 0.02562 * 13 3 2 16 16 H 1.08993 * 109.46177 * 39.99997 * 15 13 3 17 17 C 1.53034 * 109.46343 * 280.01638 * 15 13 3 18 18 C 1.50785 * 109.19984 * 286.68586 * 17 15 13 19 19 O 1.21237 * 120.01971 * 145.73543 * 18 17 15 20 20 N 1.34556 * 119.96197 * 325.76638 * 18 17 15 21 21 C 1.34337 * 120.98932 * 4.43194 * 20 18 17 22 22 O 1.21536 * 119.21407 * 191.99671 * 21 20 18 23 23 N 1.34297 * 121.58121 * 12.02204 * 21 20 18 24 24 H 1.08996 * 109.47493 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46925 * 299.99888 * 1 2 3 26 26 H 1.08999 * 109.46913 * 59.99997 * 1 2 3 27 27 H 1.09000 * 109.46784 * 239.99580 * 2 1 3 28 28 H 1.09002 * 109.47475 * 120.00491 * 2 1 3 29 29 H 1.09000 * 109.47175 * 329.99936 * 4 3 2 30 30 H 1.09001 * 109.47297 * 209.99443 * 4 3 2 31 31 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.52061 * 46.59142 * 17 15 13 33 33 H 1.08999 * 109.51990 * 166.76929 * 17 15 13 34 34 H 0.97002 * 119.50244 * 184.45101 * 20 18 17 35 35 H 0.96992 * 119.53693 * 185.71303 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 1.2687 5 6 3.6859 1.8348 1.7037 6 1 4.3415 1.2267 1.0982 7 6 4.1495 2.3903 2.8774 8 7 3.3496 3.1264 3.6175 9 14 5.9140 2.0973 3.4162 10 1 6.8411 2.6205 2.3810 11 1 6.1615 2.7972 4.7023 12 1 6.1419 0.6407 3.5941 13 6 2.2430 2.0165 -1.1672 14 8 2.6477 3.1598 -1.1673 15 6 1.9913 1.3062 -2.4723 16 1 1.0805 0.7129 -2.3930 17 6 3.1730 0.3869 -2.7887 18 6 4.3517 1.2240 -3.2173 19 8 5.4778 0.8773 -2.9315 20 7 4.1530 2.3563 -3.9164 21 6 2.9120 2.8057 -4.1671 22 8 2.7567 3.6978 -4.9777 23 7 1.8390 2.2930 -3.5432 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.5818 1.6876 2.0284 30 1 2.0957 3.1410 1.1384 31 1 3.6757 3.5169 4.4434 32 1 3.4373 -0.1857 -1.8996 33 1 2.8987 -0.2949 -3.5938 34 1 4.9172 2.8555 -4.2446 35 1 0.9506 2.5802 -3.8059 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596889519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:26 Heat of formation + Delta-G solvation = -93.332936 kcal Electronic energy + Delta-G solvation = -21609.923730 eV Core-core repulsion = 18222.487914 eV Total energy + Delta-G solvation = -3387.435816 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.75746 -39.22447 -38.74541 -35.86867 -35.45277 -34.20215 -32.85826 -31.00336 -30.28603 -27.55989 -25.55892 -23.50602 -23.14630 -22.73338 -20.35461 -19.03261 -18.11478 -17.38783 -17.07194 -16.51066 -16.16652 -15.93999 -15.47197 -14.89600 -14.61152 -14.35099 -14.12405 -13.74691 -13.54780 -13.29065 -12.81460 -12.48238 -12.13073 -12.07379 -11.71422 -11.30346 -11.01950 -10.87853 -10.73657 -10.59915 -10.26612 -10.19966 -10.13797 -10.01522 -9.73468 -8.84510 -8.48347 -7.86852 -6.10307 -4.15525 1.77054 2.48304 3.00651 3.03278 3.27652 3.30431 3.34855 3.40026 3.69302 4.22197 4.36954 4.44794 4.59557 4.84531 5.01910 5.09235 5.20798 5.25139 5.42410 5.56643 5.80313 5.92226 6.07254 6.24582 6.31985 6.72493 6.88331 7.26907 7.30548 7.38507 7.52675 7.85001 8.13799 8.16534 8.22024 8.71461 8.90539 9.50259 10.97763 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.018441 B = 0.006891 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.977232 B = 4062.453079 C = 4671.516066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.097 3.903 3 N -0.589 5.589 4 C 0.247 3.753 5 C -0.530 4.530 6 H 0.057 0.943 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.483 3.517 14 O -0.520 6.520 15 C 0.114 3.886 16 H 0.129 0.871 17 C -0.151 4.151 18 C 0.528 3.472 19 O -0.495 6.495 20 N -0.670 5.670 21 C 0.728 3.272 22 O -0.563 6.563 23 N -0.705 5.705 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.065 0.935 28 H 0.089 0.911 29 H 0.035 0.965 30 H 0.043 0.957 31 H 0.265 0.735 32 H 0.132 0.868 33 H 0.124 0.876 34 H 0.426 0.574 35 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.833 -9.739 -12.034 16.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.027 4.027 3 N -0.321 5.321 4 C 0.128 3.872 5 C -0.569 4.569 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.724 3.276 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.201 1.201 13 C 0.266 3.734 14 O -0.396 6.396 15 C 0.004 3.996 16 H 0.146 0.854 17 C -0.191 4.191 18 C 0.315 3.685 19 O -0.366 6.366 20 N -0.339 5.339 21 C 0.428 3.572 22 O -0.439 6.439 23 N -0.363 5.363 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.069 0.931 27 H 0.084 0.916 28 H 0.107 0.893 29 H 0.053 0.947 30 H 0.061 0.939 31 H 0.074 0.926 32 H 0.150 0.850 33 H 0.142 0.858 34 H 0.267 0.733 35 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -6.081 -8.888 -11.978 16.107 hybrid contribution 0.859 0.131 0.397 0.956 sum -5.221 -8.757 -11.581 15.429 Atomic orbital electron populations 1.22248 0.96395 1.01768 1.02523 1.21599 0.93837 0.84089 1.03169 1.48297 1.62992 1.13246 1.07535 1.19327 0.96492 0.93626 0.77709 1.21363 0.96834 1.32183 1.06528 0.92429 1.24915 0.97881 0.94786 0.96327 1.69913 1.35773 1.33211 1.14354 0.86570 0.84757 0.78367 0.77865 1.20097 1.21133 1.20128 1.20571 0.80051 0.87580 0.85247 1.90746 1.44616 1.17607 1.86623 1.21275 1.00916 0.89894 0.87476 0.85357 1.22273 0.92124 0.98339 1.06392 1.20692 0.91230 0.80798 0.75764 1.90801 1.24878 1.69827 1.51092 1.44093 1.09522 1.26187 1.54077 1.15483 0.80512 0.80812 0.80394 1.91005 1.84339 1.31151 1.37372 1.44699 1.08695 1.45993 1.36922 0.91790 0.91715 0.93089 0.91633 0.89262 0.94696 0.93858 0.92584 0.84965 0.85843 0.73294 0.73583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.76 10.10 37.16 0.38 -1.39 16 2 C 0.10 1.25 5.64 -4.04 -0.02 1.23 16 3 N -0.59 -10.92 2.46 -175.06 -0.43 -11.35 16 4 C 0.25 6.08 5.16 -5.19 -0.03 6.05 16 5 C -0.53 -14.58 9.39 -34.44 -0.32 -14.91 16 6 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 7 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 8 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 9 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 10 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 13 C 0.48 8.82 6.56 -10.99 -0.07 8.75 16 14 O -0.52 -12.30 15.73 5.55 0.09 -12.22 16 15 C 0.11 1.34 2.79 -69.11 -0.19 1.15 16 16 H 0.13 0.97 6.12 -51.93 -0.32 0.65 16 17 C -0.15 -1.63 5.22 -27.82 -0.15 -1.78 16 18 C 0.53 7.93 7.44 -11.04 -0.08 7.85 16 19 O -0.49 -9.06 17.93 5.59 0.10 -8.96 16 20 N -0.67 -9.83 5.18 -16.02 -0.08 -9.91 16 21 C 0.73 11.02 7.98 -87.74 -0.70 10.32 16 22 O -0.56 -10.02 17.97 5.33 0.10 -9.92 16 23 N -0.70 -8.65 4.91 -60.11 -0.29 -8.95 16 24 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 26 H 0.05 0.46 7.15 -51.93 -0.37 0.09 16 27 H 0.07 0.61 4.98 -51.93 -0.26 0.36 16 28 H 0.09 1.25 8.07 -51.93 -0.42 0.83 16 29 H 0.04 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.04 1.23 7.42 -51.93 -0.39 0.84 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.13 1.45 6.60 -51.93 -0.34 1.11 16 33 H 0.12 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.43 5.82 8.86 -40.82 -0.36 5.46 16 35 H 0.42 4.21 8.90 -40.82 -0.36 3.85 16 LS Contribution 300.78 15.07 4.53 4.53 Total: -1.00 -37.10 300.78 -5.62 -42.72 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: -4.05 Total: 3.61 kcal Atomic # 6 Polarization: 20.26 SS G_CDS: -1.29 Total: 18.97 kcal Atomic # 7 Polarization: -55.53 SS G_CDS: -0.07 Total: -55.60 kcal Atomic # 8 Polarization: -31.38 SS G_CDS: 0.28 Total: -31.10 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -37.10 -5.62 -42.72 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596889519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.615 kcal (2) G-P(sol) polarization free energy of solvation -37.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds