Wall clock time and date at job start Mon Mar 30 2020 00:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46494 * 109.47257 * 2 1 4 4 C 1.46500 * 120.00020 * 90.00257 * 3 2 1 5 5 C 1.50706 * 109.46949 * 89.99910 * 4 3 2 6 6 H 1.07995 * 120.00167 * 359.72205 * 5 4 3 7 7 C 1.37879 * 119.99394 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00338 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99424 * 180.02562 * 7 5 4 10 10 H 1.48490 * 109.47405 * 60.00219 * 9 7 5 11 11 H 1.48503 * 109.46845 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47399 * 299.99813 * 9 7 5 13 13 C 1.34777 * 119.99857 * 269.99930 * 3 2 1 14 14 O 1.21284 * 120.00042 * 180.02562 * 13 3 2 15 15 C 1.50699 * 120.00130 * 0.02562 * 13 3 2 16 16 H 1.08993 * 109.46177 * 39.99997 * 15 13 3 17 17 C 1.53034 * 109.46343 * 280.01638 * 15 13 3 18 18 C 1.50785 * 109.19984 * 286.68586 * 17 15 13 19 19 O 1.21237 * 120.01971 * 145.73543 * 18 17 15 20 20 N 1.34556 * 119.96197 * 325.76638 * 18 17 15 21 21 C 1.34337 * 120.98932 * 4.43194 * 20 18 17 22 22 O 1.21536 * 119.21407 * 191.99671 * 21 20 18 23 23 N 1.34297 * 121.58121 * 12.02204 * 21 20 18 24 24 H 1.08996 * 109.47493 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46925 * 299.99888 * 1 2 3 26 26 H 1.08999 * 109.46913 * 59.99997 * 1 2 3 27 27 H 1.09000 * 109.46784 * 239.99580 * 2 1 3 28 28 H 1.09002 * 109.47475 * 120.00491 * 2 1 3 29 29 H 1.09000 * 109.47175 * 329.99936 * 4 3 2 30 30 H 1.09001 * 109.47297 * 209.99443 * 4 3 2 31 31 H 0.96996 * 119.99730 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.52061 * 46.59142 * 17 15 13 33 33 H 1.08999 * 109.51990 * 166.76929 * 17 15 13 34 34 H 0.97002 * 119.50244 * 184.45101 * 20 18 17 35 35 H 0.96992 * 119.53693 * 185.71303 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2626 2.0717 1.2687 5 6 3.6859 1.8348 1.7037 6 1 4.3415 1.2267 1.0982 7 6 4.1495 2.3903 2.8774 8 7 3.3496 3.1264 3.6175 9 14 5.9140 2.0973 3.4162 10 1 6.8411 2.6205 2.3810 11 1 6.1615 2.7972 4.7023 12 1 6.1419 0.6407 3.5941 13 6 2.2430 2.0165 -1.1672 14 8 2.6477 3.1598 -1.1673 15 6 1.9913 1.3062 -2.4723 16 1 1.0805 0.7129 -2.3930 17 6 3.1730 0.3869 -2.7887 18 6 4.3517 1.2240 -3.2173 19 8 5.4778 0.8773 -2.9315 20 7 4.1530 2.3563 -3.9164 21 6 2.9120 2.8057 -4.1671 22 8 2.7567 3.6978 -4.9777 23 7 1.8390 2.2930 -3.5432 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8933 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8899 29 1 1.5818 1.6876 2.0284 30 1 2.0957 3.1410 1.1384 31 1 3.6757 3.5169 4.4434 32 1 3.4373 -0.1857 -1.8996 33 1 2.8987 -0.2949 -3.5938 34 1 4.9172 2.8555 -4.2446 35 1 0.9506 2.5802 -3.8059 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596889519.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:44:26 Heat of formation + Delta-G solvation = -124.971851 kcal Electronic energy + Delta-G solvation = -21611.295696 eV Core-core repulsion = 18222.487914 eV Total energy + Delta-G solvation = -3388.807782 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.91538 -40.63772 -39.97607 -37.19019 -36.84086 -35.41253 -34.85407 -32.12335 -31.53401 -29.26332 -26.91298 -24.91291 -24.50720 -24.02252 -21.52277 -20.32375 -19.26074 -18.73981 -18.51555 -18.23868 -17.37606 -17.27497 -16.88486 -16.36173 -16.12077 -15.63751 -15.44454 -15.04858 -14.68178 -14.47935 -14.36884 -13.70647 -13.43226 -13.33111 -13.16958 -13.05948 -12.64706 -12.49499 -12.16424 -11.92853 -11.85920 -11.74630 -11.46577 -11.38480 -11.27459 -10.66103 -10.17337 -9.47336 -8.25052 -6.38553 0.60581 1.33399 1.37340 1.37706 1.44105 1.66809 1.90591 2.17744 2.31954 2.43883 3.05356 3.23385 3.37183 3.50469 3.99588 4.12840 4.22902 4.42303 4.48503 4.70728 4.81409 4.97660 5.06299 5.11851 5.18859 5.23044 5.50385 5.56192 5.75913 5.82221 6.04115 6.15416 6.39528 6.66694 6.75351 7.08377 7.25055 7.39800 8.81529 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.018441 B = 0.006891 C = 0.005992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.977232 B = 4062.453079 C = 4671.516066 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.086 3.914 3 N -0.592 5.592 4 C 0.264 3.736 5 C -0.541 4.541 6 H 0.052 0.948 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.957 3.043 10 H -0.285 1.285 11 H -0.278 1.278 12 H -0.257 1.257 13 C 0.470 3.530 14 O -0.587 6.587 15 C 0.132 3.868 16 H 0.191 0.809 17 C -0.146 4.146 18 C 0.519 3.481 19 O -0.537 6.537 20 N -0.673 5.673 21 C 0.725 3.275 22 O -0.595 6.595 23 N -0.690 5.690 24 H 0.100 0.900 25 H 0.034 0.966 26 H 0.071 0.929 27 H 0.114 0.886 28 H 0.074 0.926 29 H 0.027 0.973 30 H -0.006 1.006 31 H 0.267 0.733 32 H 0.138 0.862 33 H 0.186 0.814 34 H 0.425 0.575 35 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.861 -12.691 -13.278 19.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.035 4.035 3 N -0.323 5.323 4 C 0.142 3.858 5 C -0.580 4.580 6 H 0.070 0.930 7 C -0.189 4.189 8 N -0.566 5.566 9 Si 0.782 3.218 10 H -0.212 1.212 11 H -0.203 1.203 12 H -0.181 1.181 13 C 0.256 3.744 14 O -0.467 6.467 15 C 0.023 3.977 16 H 0.207 0.793 17 C -0.185 4.185 18 C 0.309 3.691 19 O -0.412 6.412 20 N -0.341 5.341 21 C 0.426 3.574 22 O -0.473 6.473 23 N -0.348 5.348 24 H 0.118 0.882 25 H 0.053 0.947 26 H 0.090 0.910 27 H 0.132 0.868 28 H 0.093 0.907 29 H 0.045 0.955 30 H 0.012 0.988 31 H 0.075 0.925 32 H 0.156 0.844 33 H 0.203 0.797 34 H 0.265 0.735 35 H 0.279 0.721 Dipole moment (debyes) X Y Z Total from point charges -7.169 -11.907 -13.230 19.189 hybrid contribution 1.159 1.077 0.789 1.768 sum -6.010 -10.830 -12.441 17.555 Atomic orbital electron populations 1.22214 0.93978 1.03989 1.02140 1.22032 0.95804 0.80777 1.04901 1.48274 1.62930 1.15311 1.05752 1.18684 0.95000 0.91508 0.80616 1.21685 0.98139 1.31718 1.06419 0.92953 1.25756 1.01802 0.94658 0.96647 1.70023 1.37567 1.34187 1.14813 0.85627 0.79670 0.79260 0.77251 1.21151 1.20285 1.18133 1.21831 0.78319 0.87108 0.87163 1.90722 1.47393 1.20813 1.87821 1.21419 1.04035 0.89235 0.83035 0.79251 1.22511 0.89352 0.97968 1.08712 1.21586 0.92109 0.80709 0.74735 1.90784 1.26840 1.70785 1.52750 1.44190 1.09631 1.26391 1.53856 1.15655 0.80977 0.80511 0.80272 1.90984 1.84810 1.32501 1.38975 1.44650 1.08571 1.45655 1.35968 0.88163 0.94690 0.91007 0.86790 0.90749 0.95465 0.98804 0.92455 0.84427 0.79677 0.73484 0.72056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.74 10.10 71.98 0.73 -2.01 16 2 C 0.09 1.94 5.64 86.38 0.49 2.43 16 3 N -0.59 -21.44 2.46 -826.15 -2.03 -23.47 16 4 C 0.26 13.40 5.16 85.63 0.44 13.85 16 5 C -0.54 -30.42 9.39 25.60 0.24 -30.18 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.90 16 7 C 0.01 0.61 5.46 84.66 0.46 1.07 16 8 N -0.93 -55.63 13.29 21.45 0.28 -55.35 16 9 Si 0.96 45.37 29.54 68.60 2.03 47.40 16 10 H -0.29 -13.91 7.11 99.48 0.71 -13.20 16 11 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 12 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 13 C 0.47 16.59 6.56 87.66 0.58 17.17 16 14 O -0.59 -28.43 15.73 -3.04 -0.05 -28.48 16 15 C 0.13 2.54 2.79 44.27 0.12 2.66 16 16 H 0.19 1.45 6.12 -2.39 -0.01 1.44 16 17 C -0.15 -2.48 5.22 29.89 0.16 -2.32 16 18 C 0.52 14.71 7.44 87.72 0.65 15.36 16 19 O -0.54 -19.38 17.93 -2.90 -0.05 -19.43 16 20 N -0.67 -19.32 5.18 -441.67 -2.29 -21.60 16 21 C 0.73 21.06 7.98 179.34 1.43 22.49 16 22 O -0.59 -20.91 17.97 -3.83 -0.07 -20.98 16 23 N -0.69 -14.88 4.91 -462.65 -2.27 -17.14 16 24 H 0.10 1.00 8.14 -2.39 -0.02 0.98 16 25 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.07 0.90 7.15 -2.39 -0.02 0.89 16 27 H 0.11 1.45 4.98 -2.39 -0.01 1.44 16 28 H 0.07 1.92 8.07 -2.39 -0.02 1.90 16 29 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 30 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 31 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 32 H 0.14 2.34 6.60 -2.38 -0.02 2.32 16 33 H 0.19 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.42 11.86 8.86 -92.71 -0.82 11.03 16 35 H 0.44 7.22 8.90 -92.71 -0.83 6.39 16 Total: -1.00 -88.33 300.78 0.36 -87.96 By element: Atomic # 1 Polarization: 11.08 SS G_CDS: -0.49 Total: 10.58 kcal Atomic # 6 Polarization: 35.22 SS G_CDS: 5.30 Total: 40.51 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -6.30 Total: -117.56 kcal Atomic # 8 Polarization: -68.72 SS G_CDS: -0.17 Total: -68.89 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 2.03 Total: 47.40 kcal Total: -88.33 0.36 -87.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596889519.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.007 kcal (2) G-P(sol) polarization free energy of solvation -88.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds