Wall clock time and date at job start Mon Mar 30 2020 00:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00074 * 2 1 4 4 C 1.50709 * 109.47156 * 179.97438 * 3 2 1 5 5 C 1.33392 * 122.53725 * 269.98188 * 4 3 2 6 6 S 1.75886 * 109.59002 * 179.77735 * 5 4 3 7 7 C 1.75885 * 90.97237 * 0.30860 * 6 5 4 8 8 C 1.50697 * 125.20833 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47332 * 269.70305 * 8 7 6 10 10 C 1.46905 * 110.99470 * 293.94724 * 9 8 7 11 11 C 1.46900 * 110.99962 * 169.99613 * 9 8 7 12 12 H 1.09002 * 109.46946 * 59.99748 * 11 9 8 13 13 C 1.52995 * 109.47308 * 299.99666 * 11 9 8 14 14 C 1.50700 * 109.46876 * 179.97438 * 11 9 8 15 15 H 1.08002 * 120.00100 * 34.90107 * 14 11 9 16 16 C 1.37880 * 119.99941 * 214.90577 * 14 11 9 17 17 N 1.31515 * 120.00086 * 183.89537 * 16 14 11 18 18 Si 1.86799 * 120.00148 * 3.88538 * 16 14 11 19 19 H 1.48496 * 109.46932 * 84.42591 * 18 16 14 20 20 H 1.48491 * 109.47212 * 204.42885 * 18 16 14 21 21 H 1.48507 * 109.46996 * 324.43060 * 18 16 14 22 22 C 1.33399 * 109.59168 * 359.68880 * 7 6 5 23 23 H 1.09000 * 109.46976 * 300.00249 * 1 2 3 24 24 H 1.09001 * 109.47213 * 59.99553 * 1 2 3 25 25 H 1.08991 * 109.47420 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47209 * 60.00657 * 3 2 1 27 27 H 1.08994 * 109.47399 * 299.99610 * 3 2 1 28 28 H 1.08000 * 125.20448 * 0.05078 * 5 4 3 29 29 H 1.08999 * 109.47139 * 149.69653 * 8 7 6 30 30 H 1.09005 * 109.46400 * 29.69668 * 8 7 6 31 31 H 1.08998 * 109.47366 * 296.04517 * 10 9 8 32 32 H 1.09000 * 109.46890 * 56.05131 * 10 9 8 33 33 H 1.08997 * 109.46501 * 176.04868 * 10 9 8 34 34 H 1.09000 * 109.47001 * 306.77093 * 13 11 9 35 35 H 1.08991 * 109.47541 * 186.76772 * 13 11 9 36 36 H 1.09008 * 109.46974 * 66.76322 * 13 11 9 37 37 H 0.96996 * 120.00229 * 179.97438 * 17 16 14 38 38 H 1.07999 * 122.53737 * 180.25813 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2274 1.1303 1.1255 6 16 5.9358 0.9883 0.7321 7 6 5.5733 1.0233 -0.9886 8 6 6.5947 0.9414 -2.0936 9 7 7.0363 2.2954 -2.4537 10 6 5.9373 3.0662 -3.0503 11 6 8.1961 2.2488 -3.3540 12 1 7.9273 1.7148 -4.2655 13 6 9.3514 1.5242 -2.6604 14 6 8.6192 3.6529 -3.7012 15 1 8.5329 4.4400 -2.9668 16 6 9.1164 3.9326 -4.9564 17 7 9.5570 5.1400 -5.2351 18 14 9.1646 2.5966 -6.2610 19 1 7.8471 2.5221 -6.9420 20 1 10.2192 2.9149 -7.2567 21 1 9.4657 1.2906 -5.6213 22 6 4.2552 1.1273 -1.1660 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6887 1.8463 0.8901 27 1 1.6887 1.8463 -0.8900 28 1 3.8191 1.1623 2.1248 29 1 6.1497 0.4605 -2.9647 30 1 7.4508 0.3582 -1.7542 31 1 5.6336 2.6002 -3.9876 32 1 5.0915 3.0848 -2.3629 33 1 6.2714 4.0857 -3.2429 34 1 9.5409 1.9865 -1.6917 35 1 10.2470 1.5941 -3.2777 36 1 9.0894 0.4758 -2.5177 37 1 9.9071 5.3367 -6.1180 38 1 3.8019 1.1625 -2.1456 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596994565.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:52 Heat of formation + Delta-G solvation = -4.385174 kcal Electronic energy + Delta-G solvation = -18344.507619 eV Core-core repulsion = 15507.222082 eV Total energy + Delta-G solvation = -2837.285537 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -38.91633 -37.62789 -36.47682 -32.83230 -31.14959 -29.58396 -27.95453 -26.82598 -25.77558 -24.78224 -23.46317 -21.22184 -19.29740 -18.86121 -17.25504 -16.86246 -16.55025 -15.83425 -15.39170 -15.01943 -14.44675 -14.33972 -13.78766 -13.10216 -13.02524 -12.72262 -12.53329 -12.45081 -12.22941 -12.02222 -11.68579 -11.55586 -11.31560 -11.04068 -10.82520 -10.69079 -10.51501 -10.30635 -10.20915 -9.86711 -9.80002 -9.12099 -8.60438 -8.44095 -8.22459 -7.34526 -6.10667 -4.09250 1.15454 1.82833 2.21395 2.67963 3.23872 3.33199 3.34440 3.92904 4.37390 4.78194 4.91769 4.96030 5.10458 5.15397 5.25126 5.27491 5.28171 5.41762 5.44493 5.69975 5.74458 5.97303 6.15520 6.29875 6.30415 6.43407 6.50274 6.55830 6.63126 6.66995 6.84405 6.95663 7.01393 7.27661 7.59348 7.96606 8.07297 8.63097 9.00069 9.52604 11.02273 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028793 B = 0.004356 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.227517 B = 6426.807585 C = 6857.389434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.385 6.385 3 C 0.124 3.876 4 C -0.103 4.103 5 C -0.210 4.210 6 S 0.124 5.876 7 C -0.140 4.140 8 C 0.110 3.890 9 N -0.525 5.525 10 C 0.037 3.963 11 C 0.179 3.821 12 H 0.001 0.999 13 C -0.135 4.135 14 C -0.500 4.500 15 H 0.082 0.918 16 C 0.072 3.928 17 N -0.897 5.897 18 Si 0.872 3.128 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.266 1.266 22 C -0.136 4.136 23 H 0.040 0.960 24 H 0.041 0.959 25 H 0.084 0.916 26 H 0.056 0.944 27 H 0.059 0.941 28 H 0.159 0.841 29 H 0.042 0.958 30 H 0.084 0.916 31 H 0.009 0.991 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.054 0.946 35 H 0.051 0.949 36 H 0.021 0.979 37 H 0.264 0.736 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.413 -9.716 10.431 20.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.305 6.305 3 C 0.045 3.955 4 C -0.116 4.116 5 C -0.347 4.347 6 S 0.389 5.611 7 C -0.258 4.258 8 C -0.020 4.020 9 N -0.250 5.250 10 C -0.111 4.111 11 C 0.073 3.927 12 H 0.019 0.981 13 C -0.193 4.193 14 C -0.538 4.538 15 H 0.100 0.900 16 C -0.130 4.130 17 N -0.535 5.535 18 Si 0.699 3.301 19 H -0.204 1.204 20 H -0.214 1.214 21 H -0.191 1.191 22 C -0.166 4.166 23 H 0.058 0.942 24 H 0.060 0.940 25 H 0.103 0.897 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.177 0.823 29 H 0.060 0.940 30 H 0.102 0.898 31 H 0.028 0.972 32 H 0.067 0.933 33 H 0.103 0.897 34 H 0.073 0.927 35 H 0.070 0.930 36 H 0.040 0.960 37 H 0.074 0.926 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -12.687 -9.632 11.564 19.684 hybrid contribution -1.740 -0.646 -2.374 3.013 sum -14.426 -10.278 9.190 19.955 Atomic orbital electron populations 1.22739 0.81281 1.02677 0.99926 1.87983 1.19302 1.27795 1.95381 1.21023 0.89080 0.84713 1.00691 1.18452 0.94838 1.05754 0.92542 1.25448 0.96884 1.10400 1.01933 1.84250 1.05081 1.71146 1.00574 1.24504 0.97473 1.06496 0.97367 1.20687 0.94875 0.93536 0.92903 1.62206 1.06966 1.10239 1.45564 1.22228 0.92878 1.00437 0.95542 1.19763 0.86632 0.97346 0.88970 0.98109 1.22010 0.99508 0.96503 1.01308 1.20863 1.41215 0.92866 0.98893 0.90045 1.24988 0.94864 0.95104 0.98049 1.69884 1.41799 1.19937 1.21834 0.86952 0.78002 0.83114 0.82023 1.20364 1.21386 1.19094 1.19867 0.92494 1.05255 0.98953 0.94169 0.94044 0.89706 0.92610 0.92325 0.82297 0.93979 0.89791 0.97248 0.93255 0.89737 0.92657 0.93029 0.96044 0.92584 0.84737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.62 10.69 -35.23 -0.38 -4.99 16 3 C 0.12 1.38 6.19 36.01 0.22 1.60 16 4 C -0.10 -1.38 5.43 -106.25 -0.58 -1.95 16 5 C -0.21 -2.69 10.98 29.04 0.32 -2.37 16 6 S 0.12 1.76 23.33 -107.50 -2.51 -0.75 16 7 C -0.14 -2.23 5.44 -36.00 -0.20 -2.43 16 8 C 0.11 1.93 5.27 -4.98 -0.03 1.91 16 9 N -0.52 -10.97 4.61 -237.73 -1.10 -12.07 16 10 C 0.04 0.75 9.01 60.07 0.54 1.29 16 11 C 0.18 4.20 1.70 -68.87 -0.12 4.08 16 12 H 0.00 0.03 5.35 -51.93 -0.28 -0.25 16 13 C -0.14 -2.88 8.76 37.15 0.33 -2.55 16 14 C -0.50 -13.73 7.46 -34.44 -0.26 -13.99 16 15 H 0.08 2.48 8.04 -52.49 -0.42 2.06 16 16 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 17 N -0.90 -26.92 13.96 55.43 0.77 -26.14 16 18 Si 0.87 21.29 26.95 -169.99 -4.58 16.71 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 20 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 21 H -0.27 -6.25 6.88 56.52 0.39 -5.86 16 22 C -0.14 -2.01 8.30 -41.21 -0.34 -2.35 16 23 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 24 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 26 H 0.06 0.52 8.12 -51.93 -0.42 0.10 16 27 H 0.06 0.60 8.13 -51.93 -0.42 0.18 16 28 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 29 H 0.04 0.73 8.12 -51.93 -0.42 0.31 16 30 H 0.08 1.44 5.97 -51.93 -0.31 1.13 16 31 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 32 H 0.05 0.88 6.07 -51.93 -0.32 0.56 16 33 H 0.08 1.90 6.96 -51.93 -0.36 1.54 16 34 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.05 1.12 8.13 -51.93 -0.42 0.70 16 36 H 0.02 0.39 6.57 -51.92 -0.34 0.05 16 37 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 38 H 0.13 1.91 8.05 -52.49 -0.42 1.49 16 LS Contribution 322.25 15.07 4.86 4.86 Total: -1.00 -30.21 322.25 -7.85 -38.06 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -5.82 Total: -2.21 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: 0.91 Total: -13.46 kcal Atomic # 7 Polarization: -37.88 SS G_CDS: -0.32 Total: -38.21 kcal Atomic # 8 Polarization: -4.62 SS G_CDS: -0.38 Total: -4.99 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -4.58 Total: 16.71 kcal Atomic # 16 Polarization: 1.76 SS G_CDS: -2.51 Total: -0.75 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.21 -7.85 -38.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596994565.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.676 kcal (2) G-P(sol) polarization free energy of solvation -30.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds