Wall clock time and date at job start Mon Mar 30 2020 00:40:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42896 * 114.00074 * 2 1 4 4 C 1.50709 * 109.47156 * 179.97438 * 3 2 1 5 5 C 1.33392 * 122.53725 * 269.98188 * 4 3 2 6 6 S 1.75886 * 109.59002 * 179.77735 * 5 4 3 7 7 C 1.75885 * 90.97237 * 0.30860 * 6 5 4 8 8 C 1.50697 * 125.20833 * 179.97438 * 7 6 5 9 9 N 1.46902 * 109.47332 * 269.70305 * 8 7 6 10 10 C 1.46905 * 110.99470 * 293.94724 * 9 8 7 11 11 C 1.46900 * 110.99962 * 169.99613 * 9 8 7 12 12 H 1.09002 * 109.46946 * 59.99748 * 11 9 8 13 13 C 1.52995 * 109.47308 * 299.99666 * 11 9 8 14 14 C 1.50700 * 109.46876 * 179.97438 * 11 9 8 15 15 H 1.08002 * 120.00100 * 34.90107 * 14 11 9 16 16 C 1.37880 * 119.99941 * 214.90577 * 14 11 9 17 17 N 1.31515 * 120.00086 * 183.89537 * 16 14 11 18 18 Si 1.86799 * 120.00148 * 3.88538 * 16 14 11 19 19 H 1.48496 * 109.46932 * 84.42591 * 18 16 14 20 20 H 1.48491 * 109.47212 * 204.42885 * 18 16 14 21 21 H 1.48507 * 109.46996 * 324.43060 * 18 16 14 22 22 C 1.33399 * 109.59168 * 359.68880 * 7 6 5 23 23 H 1.09000 * 109.46976 * 300.00249 * 1 2 3 24 24 H 1.09001 * 109.47213 * 59.99553 * 1 2 3 25 25 H 1.08991 * 109.47420 * 179.97438 * 1 2 3 26 26 H 1.09006 * 109.47209 * 60.00657 * 3 2 1 27 27 H 1.08994 * 109.47399 * 299.99610 * 3 2 1 28 28 H 1.08000 * 125.20448 * 0.05078 * 5 4 3 29 29 H 1.08999 * 109.47139 * 149.69653 * 8 7 6 30 30 H 1.09005 * 109.46400 * 29.69668 * 8 7 6 31 31 H 1.08998 * 109.47366 * 296.04517 * 10 9 8 32 32 H 1.09000 * 109.46890 * 56.05131 * 10 9 8 33 33 H 1.08997 * 109.46501 * 176.04868 * 10 9 8 34 34 H 1.09000 * 109.47001 * 306.77093 * 13 11 9 35 35 H 1.08991 * 109.47541 * 186.76772 * 13 11 9 36 36 H 1.09008 * 109.46974 * 66.76322 * 13 11 9 37 37 H 0.96996 * 120.00229 * 179.97438 * 17 16 14 38 38 H 1.07999 * 122.53737 * 180.25813 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5126 1.1864 0.0006 5 6 4.2274 1.1303 1.1255 6 16 5.9358 0.9883 0.7321 7 6 5.5733 1.0233 -0.9886 8 6 6.5947 0.9414 -2.0936 9 7 7.0363 2.2954 -2.4537 10 6 5.9373 3.0662 -3.0503 11 6 8.1961 2.2488 -3.3540 12 1 7.9273 1.7148 -4.2655 13 6 9.3514 1.5242 -2.6604 14 6 8.6192 3.6529 -3.7012 15 1 8.5329 4.4400 -2.9668 16 6 9.1164 3.9326 -4.9564 17 7 9.5570 5.1400 -5.2351 18 14 9.1646 2.5966 -6.2610 19 1 7.8471 2.5221 -6.9420 20 1 10.2192 2.9149 -7.2567 21 1 9.4657 1.2906 -5.6213 22 6 4.2552 1.1273 -1.1660 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6887 1.8463 0.8901 27 1 1.6887 1.8463 -0.8900 28 1 3.8191 1.1623 2.1248 29 1 6.1497 0.4605 -2.9647 30 1 7.4508 0.3582 -1.7542 31 1 5.6336 2.6002 -3.9876 32 1 5.0915 3.0848 -2.3629 33 1 6.2714 4.0857 -3.2429 34 1 9.5409 1.9865 -1.6917 35 1 10.2470 1.5941 -3.2777 36 1 9.0894 0.4758 -2.5177 37 1 9.9071 5.3367 -6.1180 38 1 3.8019 1.1625 -2.1456 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596994565.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:40:52 Heat of formation + Delta-G solvation = -24.340377 kcal Electronic energy + Delta-G solvation = -18345.372941 eV Core-core repulsion = 15507.222082 eV Total energy + Delta-G solvation = -2838.150860 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.97437 -38.91964 -37.65779 -34.78288 -32.72445 -31.11542 -28.96585 -28.15845 -26.70288 -26.47598 -25.00233 -22.48916 -21.05508 -19.93134 -19.11733 -18.15584 -17.31881 -16.92929 -16.63568 -16.20485 -16.10880 -15.83034 -15.14169 -14.66117 -14.56345 -14.23130 -13.85108 -13.64902 -13.32445 -13.22801 -12.97724 -12.95293 -12.74648 -12.61925 -12.35742 -12.16183 -12.04894 -11.89836 -11.80523 -11.57769 -11.08422 -10.75324 -10.61390 -9.59462 -9.30251 -8.98910 -8.28407 -6.31246 0.06786 0.74832 1.13231 1.31319 1.33602 1.43617 1.62247 2.32380 3.01829 3.15571 3.40610 3.84460 4.07052 4.18794 4.28463 4.37728 4.44538 4.51994 4.53904 4.58738 4.60436 4.62137 4.73883 4.80126 4.82874 4.88868 4.92288 5.10851 5.20882 5.26451 5.43029 5.48098 5.55435 5.67756 6.07657 6.24138 6.34250 6.66211 6.77408 7.34441 8.88467 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.028793 B = 0.004356 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.227517 B = 6426.807585 C = 6857.389434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.412 6.412 3 C 0.124 3.876 4 C -0.117 4.117 5 C -0.197 4.197 6 S 0.120 5.880 7 C -0.170 4.170 8 C 0.115 3.885 9 N -0.537 5.537 10 C 0.046 3.954 11 C 0.181 3.819 12 H 0.000 1.000 13 C -0.130 4.130 14 C -0.497 4.497 15 H 0.035 0.965 16 C 0.016 3.984 17 N -0.946 5.946 18 Si 0.934 3.066 19 H -0.271 1.271 20 H -0.286 1.286 21 H -0.246 1.246 22 C -0.131 4.131 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.187 0.813 29 H 0.047 0.953 30 H 0.089 0.911 31 H 0.012 0.988 32 H 0.071 0.929 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.043 0.957 36 H 0.054 0.946 37 H 0.266 0.734 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.029 -11.871 11.123 22.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.332 6.332 3 C 0.046 3.954 4 C -0.130 4.130 5 C -0.333 4.333 6 S 0.386 5.614 7 C -0.288 4.288 8 C -0.014 4.014 9 N -0.261 5.261 10 C -0.102 4.102 11 C 0.074 3.926 12 H 0.018 0.982 13 C -0.188 4.188 14 C -0.536 4.536 15 H 0.053 0.947 16 C -0.181 4.181 17 N -0.586 5.586 18 Si 0.759 3.241 19 H -0.197 1.197 20 H -0.212 1.212 21 H -0.169 1.169 22 C -0.162 4.162 23 H 0.073 0.927 24 H 0.067 0.933 25 H 0.113 0.887 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.204 0.796 29 H 0.065 0.935 30 H 0.107 0.893 31 H 0.030 0.970 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.062 0.938 36 H 0.073 0.927 37 H 0.075 0.925 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -14.319 -11.807 12.280 22.254 hybrid contribution -1.348 0.061 -2.447 2.794 sum -15.666 -11.746 9.833 21.911 Atomic orbital electron populations 1.22934 0.79409 1.03763 1.01026 1.87931 1.21396 1.28229 1.95616 1.21062 0.87541 0.84809 1.01983 1.18704 0.96316 1.05886 0.92094 1.25805 0.95808 1.08564 1.03140 1.84232 1.06488 1.71237 0.99484 1.24347 0.97504 1.09097 0.97818 1.20629 0.95690 0.91317 0.93781 1.62062 1.06677 1.12711 1.44678 1.22101 0.93321 0.98455 0.96320 1.19644 0.88402 0.94753 0.89842 0.98234 1.21902 0.98168 0.98226 1.00548 1.20995 1.40634 0.94021 0.97903 0.94704 1.25789 0.94630 0.97326 1.00404 1.70034 1.43649 1.22368 1.22573 0.85934 0.78206 0.80897 0.79105 1.19680 1.21179 1.16934 1.20060 0.92323 1.04007 0.99796 0.92707 0.93278 0.88733 0.90667 0.91720 0.79609 0.93453 0.89259 0.96979 0.91007 0.93133 0.93100 0.93800 0.92714 0.92524 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.33 11.01 113.37 1.25 1.58 16 2 O -0.41 -8.83 10.69 -148.98 -1.59 -10.43 16 3 C 0.12 2.43 6.19 71.24 0.44 2.87 16 4 C -0.12 -2.86 5.43 -20.92 -0.11 -2.97 16 5 C -0.20 -4.49 10.98 66.72 0.73 -3.76 16 6 S 0.12 3.18 23.33 -56.49 -1.32 1.86 16 7 C -0.17 -5.12 5.44 24.59 0.13 -4.99 16 8 C 0.11 3.85 5.27 85.56 0.45 4.31 16 9 N -0.54 -22.13 4.61 -906.04 -4.18 -26.31 16 10 C 0.05 1.87 9.01 127.69 1.15 3.02 16 11 C 0.18 8.37 1.70 44.17 0.08 8.44 16 12 H 0.00 0.00 5.35 -2.39 -0.01 -0.01 16 13 C -0.13 -5.37 8.76 71.98 0.63 -4.73 16 14 C -0.50 -28.04 7.46 25.60 0.19 -27.85 16 15 H 0.03 2.24 8.04 -2.91 -0.02 2.21 16 16 C 0.02 0.93 5.47 84.66 0.46 1.39 16 17 N -0.95 -58.63 13.96 21.45 0.30 -58.33 16 18 Si 0.93 43.73 26.95 68.60 1.85 45.58 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 20 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 21 H -0.25 -10.62 6.88 99.48 0.68 -9.94 16 22 C -0.13 -3.63 8.30 21.22 0.18 -3.46 16 23 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 24 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 26 H 0.08 1.16 8.12 -2.38 -0.02 1.14 16 27 H 0.06 1.16 8.13 -2.39 -0.02 1.14 16 28 H 0.19 3.14 8.06 -2.91 -0.02 3.11 16 29 H 0.05 1.54 8.12 -2.39 -0.02 1.52 16 30 H 0.09 2.86 5.97 -2.38 -0.01 2.84 16 31 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.07 2.52 6.07 -2.39 -0.01 2.50 16 33 H 0.05 2.35 6.96 -2.39 -0.02 2.33 16 34 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 35 H 0.04 1.84 8.13 -2.39 -0.02 1.82 16 36 H 0.05 1.87 6.57 -2.38 -0.02 1.86 16 37 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 38 H 0.14 3.64 8.05 -2.91 -0.02 3.62 16 Total: -1.00 -66.07 322.25 1.64 -64.43 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 1.01 Total: 9.35 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: 5.58 Total: -26.16 kcal Atomic # 7 Polarization: -80.76 SS G_CDS: -3.88 Total: -84.64 kcal Atomic # 8 Polarization: -8.83 SS G_CDS: -1.59 Total: -10.43 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.85 Total: 45.58 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.32 Total: 1.86 kcal Total: -66.07 1.64 -64.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596994565.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.087 kcal (2) G-P(sol) polarization free energy of solvation -66.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds