Wall clock time and date at job start Mon Mar 30 2020 01:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35130 * 125.55032 * 2 1 4 4 C 1.40984 * 108.23937 * 180.02562 * 3 2 1 5 5 N 1.33304 * 126.35653 * 179.97438 * 4 3 2 6 6 C 1.32911 * 119.99643 * 0.03424 * 5 4 3 7 7 O 1.21588 * 120.00466 * 359.97438 * 6 5 4 8 8 C 1.50706 * 119.99504 * 179.97438 * 6 5 4 9 9 C 1.53002 * 109.46925 * 179.97438 * 8 6 5 10 10 C 1.52996 * 109.47340 * 180.02562 * 9 8 6 11 11 F 1.39900 * 109.47126 * 180.02562 * 10 9 8 12 12 N 1.37278 * 107.28681 * 0.23328 * 4 3 2 13 13 H 0.97002 * 126.34901 * 179.75014 * 12 4 3 14 14 N 1.36336 * 125.55413 * 180.02562 * 2 1 3 15 15 C 1.46499 * 125.86026 * 359.97267 * 14 2 1 16 16 C 1.50704 * 109.47163 * 85.00344 * 15 14 2 17 17 H 1.07996 * 119.99833 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00071 * 180.02562 * 16 15 14 19 19 N 1.31515 * 120.00119 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 119.99960 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47212 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47253 * 119.99692 * 20 18 16 23 23 H 1.48502 * 109.47218 * 239.99867 * 20 18 16 24 24 H 1.08998 * 109.47271 * 89.97629 * 1 2 3 25 25 H 1.09001 * 109.46792 * 209.97372 * 1 2 3 26 26 H 1.08995 * 109.47400 * 329.96974 * 1 2 3 27 27 H 1.07998 * 125.87664 * 0.02562 * 3 2 1 28 28 H 1.09000 * 109.47318 * 299.99132 * 8 6 5 29 29 H 1.09000 * 109.47161 * 59.99763 * 8 6 5 30 30 H 1.09004 * 109.46930 * 299.99901 * 9 8 6 31 31 H 1.09004 * 109.47059 * 59.99503 * 9 8 6 32 32 H 1.09004 * 109.46785 * 299.99692 * 10 9 8 33 33 H 1.09000 * 109.47196 * 59.99588 * 10 9 8 34 34 H 1.08996 * 109.47365 * 205.00167 * 15 14 2 35 35 H 1.09006 * 109.47311 * 325.00178 * 15 14 2 36 36 H 0.97001 * 120.00364 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2926 1.0994 0.0000 4 6 3.6386 0.6799 -0.0006 5 7 4.7125 1.4697 -0.0013 6 6 4.5658 2.7907 -0.0007 7 8 3.4522 3.2788 -0.0001 8 6 5.7799 3.6836 -0.0009 9 6 5.3361 5.1478 -0.0008 10 6 6.5686 6.0543 -0.0016 11 9 6.1627 7.3932 -0.0010 12 7 3.6380 -0.6929 -0.0063 13 1 4.4191 -1.2681 -0.0114 14 7 2.2997 -1.1092 -0.0005 15 6 1.8328 -2.4978 -0.0006 16 6 1.5548 -2.9343 -1.4160 17 1 1.7100 -2.2460 -2.2336 18 6 1.1014 -4.2119 -1.6669 19 7 0.9119 -5.0499 -0.6712 20 14 0.7576 -4.7531 -3.4214 21 1 1.0487 -3.6325 -4.3512 22 1 1.6198 -5.9140 -3.7593 23 1 -0.6697 -5.1430 -3.5485 24 1 -0.3634 0.0004 -1.0276 25 1 -0.3633 -0.8902 0.5134 26 1 -0.3634 0.8897 0.5143 27 1 1.9486 2.1232 0.0004 28 1 6.3773 3.4847 0.8888 29 1 6.3767 3.4852 -0.8912 30 1 4.7388 5.3464 -0.8908 31 1 4.7390 5.3464 0.8892 32 1 7.1662 5.8558 0.8881 33 1 7.1653 5.8555 -0.8919 34 1 2.5999 -3.1391 0.4334 35 1 0.9192 -2.5740 0.5892 36 1 0.5925 -5.9487 -0.8477 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597460167.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:20:42 Heat of formation + Delta-G solvation = -25.961037 kcal Electronic energy + Delta-G solvation = -19741.697738 eV Core-core repulsion = 16369.556176 eV Total energy + Delta-G solvation = -3372.141562 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.128 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -48.51202 -42.46691 -40.07026 -36.12307 -34.98403 -34.62914 -33.69793 -32.37610 -29.07031 -28.83743 -27.76298 -24.99681 -23.65640 -22.29411 -21.14266 -20.37975 -18.92847 -18.39775 -17.33852 -17.28539 -16.95412 -16.64343 -16.50497 -15.93926 -15.81769 -15.64694 -15.00513 -14.50573 -14.39583 -14.16955 -14.08723 -13.76205 -13.63622 -13.20845 -12.97095 -12.75387 -12.70201 -12.34030 -12.28581 -12.01266 -11.92753 -11.48438 -11.10702 -10.81576 -10.76399 -10.35159 -9.88717 -8.62975 -8.29971 -6.57815 0.12451 0.52530 1.36190 1.41497 1.45832 1.51592 2.29302 2.69848 2.87154 2.93333 3.37385 3.65046 3.96151 3.96477 4.11455 4.22541 4.26578 4.29177 4.54978 4.64869 4.69328 4.81174 4.83251 4.85815 4.90795 5.04789 5.13328 5.15594 5.29772 5.35592 5.49614 5.67854 5.96339 6.10566 6.41039 6.60855 6.87127 7.16036 7.87105 8.65124 Molecular weight = 269.13amu Principal moments of inertia in cm(-1) A = 0.038605 B = 0.003254 C = 0.003201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.125072 B = 8601.541496 C = 8745.531335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.197 3.803 3 C -0.348 4.348 4 C 0.454 3.546 5 N -0.714 5.714 6 C 0.474 3.526 7 O -0.617 6.617 8 C -0.101 4.101 9 C -0.133 4.133 10 C 0.063 3.937 11 F -0.238 7.238 12 N -0.462 5.462 13 H 0.453 0.547 14 N -0.344 5.344 15 C 0.266 3.734 16 C -0.562 4.562 17 H 0.057 0.943 18 C 0.033 3.967 19 N -0.912 5.912 20 Si 0.963 3.037 21 H -0.273 1.273 22 H -0.279 1.279 23 H -0.272 1.272 24 H 0.099 0.901 25 H 0.085 0.915 26 H 0.114 0.886 27 H 0.175 0.825 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.098 0.902 33 H 0.097 0.903 34 H 0.044 0.956 35 H 0.071 0.929 36 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.883 9.621 1.842 10.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.070 3.930 3 C -0.380 4.380 4 C 0.206 3.794 5 N -0.478 5.478 6 C 0.261 3.739 7 O -0.502 6.502 8 C -0.141 4.141 9 C -0.171 4.171 10 C 0.009 3.991 11 F -0.220 7.220 12 N -0.185 5.185 13 H 0.302 0.698 14 N -0.130 5.130 15 C 0.149 3.851 16 C -0.600 4.600 17 H 0.075 0.925 18 C -0.170 4.170 19 N -0.550 5.550 20 Si 0.788 3.212 21 H -0.198 1.198 22 H -0.204 1.204 23 H -0.197 1.197 24 H 0.117 0.883 25 H 0.104 0.896 26 H 0.132 0.868 27 H 0.192 0.808 28 H 0.126 0.874 29 H 0.124 0.876 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.115 0.885 34 H 0.062 0.938 35 H 0.089 0.911 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.077 9.051 1.905 10.551 hybrid contribution -0.383 -0.676 -0.826 1.135 sum 4.694 8.375 1.078 9.661 Atomic orbital electron populations 1.20792 0.83546 1.05488 1.05244 1.21937 0.96102 0.84589 0.90347 1.22209 0.91444 1.00322 1.23979 1.19489 0.92330 0.82580 0.85023 1.68863 1.28138 1.06040 1.44794 1.21631 0.90472 0.86746 0.75046 1.90514 1.29008 1.79604 1.51076 1.21077 0.95586 0.91711 1.05680 1.21834 0.98134 0.94029 1.03116 1.22166 0.96424 0.74800 1.05725 1.92719 1.92738 1.38160 1.98352 1.44527 0.98980 1.05034 1.69929 0.69790 1.47857 0.93315 1.08082 1.63780 1.19766 0.96343 0.70747 0.98277 1.21537 1.47375 0.98657 0.92434 0.92458 1.25568 0.94144 0.95898 1.01375 1.69961 1.44856 1.07299 1.32847 0.85413 0.78307 0.78131 0.79311 1.19790 1.20435 1.19733 0.88296 0.89639 0.86782 0.80794 0.87415 0.87640 0.92303 0.92119 0.88371 0.88494 0.93838 0.91122 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.42 10.09 71.23 0.72 -1.70 16 2 C 0.20 6.82 6.93 41.14 0.29 7.11 16 3 C -0.35 -13.30 9.41 22.23 0.21 -13.09 16 4 C 0.45 17.83 8.07 133.83 1.08 18.91 16 5 N -0.71 -27.77 10.51 -309.87 -3.26 -31.02 16 6 C 0.47 17.70 7.71 87.95 0.68 18.38 16 7 O -0.62 -26.26 12.89 -3.99 -0.05 -26.31 16 8 C -0.10 -2.60 5.78 29.85 0.17 -2.43 16 9 C -0.13 -3.25 4.96 30.59 0.15 -3.10 16 10 C 0.06 1.13 7.55 71.98 0.54 1.67 16 11 F -0.24 -5.73 17.36 44.97 0.78 -4.95 16 12 N -0.46 -16.63 7.37 -54.81 -0.40 -17.03 16 13 H 0.45 14.22 8.96 -213.28 -1.91 12.31 16 14 N -0.34 -12.83 3.63 -337.49 -1.23 -14.05 16 15 C 0.27 10.89 5.93 85.63 0.51 11.39 16 16 C -0.56 -26.00 9.39 25.60 0.24 -25.76 16 17 H 0.06 2.76 7.81 -2.91 -0.02 2.74 16 18 C 0.03 1.54 5.46 84.65 0.46 2.00 16 19 N -0.91 -44.98 13.29 21.45 0.28 -44.70 16 20 Si 0.96 38.24 29.54 68.60 2.03 40.26 16 21 H -0.27 -10.92 7.11 99.48 0.71 -10.22 16 22 H -0.28 -10.99 7.11 99.48 0.71 -10.28 16 23 H -0.27 -10.49 7.11 99.48 0.71 -9.79 16 24 H 0.10 2.48 8.14 -2.39 -0.02 2.46 16 25 H 0.08 2.18 7.14 -2.39 -0.02 2.16 16 26 H 0.11 2.34 8.14 -2.39 -0.02 2.33 16 27 H 0.18 7.02 5.77 -2.91 -0.02 7.00 16 28 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 29 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.06 1.65 8.10 -2.38 -0.02 1.63 16 31 H 0.06 1.67 8.10 -2.39 -0.02 1.65 16 32 H 0.10 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.07 2.89 7.18 -2.38 -0.02 2.87 16 36 H 0.27 12.83 8.31 -92.71 -0.77 12.06 16 Total: -1.00 -60.87 315.53 2.39 -58.48 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: -0.81 Total: 25.94 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 5.05 Total: 13.38 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -4.60 Total: -106.81 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -0.05 Total: -26.31 kcal Atomic # 9 Polarization: -5.73 SS G_CDS: 0.78 Total: -4.95 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.26 kcal Total: -60.87 2.39 -58.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597460167.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.520 kcal (2) G-P(sol) polarization free energy of solvation -60.874 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds