Wall clock time and date at job start Mon Mar 30 2020 00:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.81404 * 103.00064 * 2 1 4 4 C 1.50700 * 115.54784 * 297.99630 * 3 2 1 5 5 O 1.21283 * 119.99916 * 108.82957 * 4 3 2 6 6 N 1.34776 * 119.99754 * 288.82869 * 4 3 2 7 7 C 1.46928 * 120.63328 * 354.99638 * 6 4 3 8 8 C 1.53188 * 108.77425 * 126.41346 * 7 6 4 9 9 C 1.53049 * 109.31382 * 54.63476 * 8 7 6 10 10 C 1.53040 * 109.53555 * 298.63600 * 9 8 7 11 11 H 1.08998 * 109.49643 * 301.40778 * 10 9 8 12 12 C 1.50707 * 109.49222 * 181.31281 * 10 9 8 13 13 H 1.07997 * 119.99951 * 239.99675 * 12 10 9 14 14 C 1.37877 * 119.99672 * 60.00431 * 12 10 9 15 15 N 1.31518 * 120.00414 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99731 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47215 * 89.99501 * 16 14 12 18 18 H 1.48504 * 109.47068 * 209.99826 * 16 14 12 19 19 H 1.48505 * 109.47111 * 329.99517 * 16 14 12 20 20 C 1.46926 * 120.62897 * 175.02226 * 6 4 3 21 21 C 1.52996 * 117.51611 * 83.69612 * 3 2 1 22 22 C 1.52997 * 60.00345 * 107.48389 * 21 3 2 23 23 H 1.09005 * 109.47439 * 65.08300 * 1 2 3 24 24 H 1.09000 * 109.47356 * 185.07857 * 1 2 3 25 25 H 1.08996 * 109.47613 * 305.08009 * 1 2 3 26 26 H 1.08996 * 109.58230 * 6.62897 * 7 6 4 27 27 H 1.09003 * 109.58658 * 246.20193 * 7 6 4 28 28 H 1.09003 * 109.49765 * 294.68568 * 8 7 6 29 29 H 1.08998 * 109.49853 * 174.58991 * 8 7 6 30 30 H 1.08999 * 109.45700 * 58.65309 * 9 8 7 31 31 H 1.08993 * 109.46197 * 178.62642 * 9 8 7 32 32 H 0.96994 * 119.99754 * 179.97438 * 15 14 12 33 33 H 1.08998 * 109.59228 * 113.79615 * 20 6 4 34 34 H 1.09004 * 109.70694 * 353.43817 * 20 6 4 35 35 H 1.09003 * 117.49798 * 214.97294 * 21 3 2 36 36 H 1.08998 * 117.50386 * 359.97438 * 21 3 2 37 37 H 1.09004 * 117.49783 * 252.51432 * 22 21 3 38 38 H 1.08999 * 117.50123 * 107.48713 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.7463 2.5444 -1.2005 5 8 0.8353 3.3370 -1.0879 6 7 2.3333 2.3583 -2.3994 7 6 3.5075 1.4848 -2.5305 8 6 3.2293 0.4451 -3.6206 9 6 2.8310 1.1612 -4.9133 10 6 1.5523 1.9685 -4.6781 11 1 0.7560 1.3009 -4.3491 12 6 1.1432 2.6473 -5.9599 13 1 1.0720 3.7241 -6.0018 14 6 0.8597 1.8935 -7.0790 15 7 0.9467 0.5822 -7.0281 16 14 0.3519 2.7349 -8.6676 17 1 1.5600 3.0319 -9.4786 18 1 -0.5516 1.8401 -9.4348 19 1 -0.3565 4.0015 -8.3525 20 6 1.8116 3.0255 -3.6000 21 6 2.2358 2.4898 1.3487 22 6 3.5520 2.1856 0.6304 23 1 -0.3634 0.4330 -0.9320 24 1 -0.3634 -1.0236 0.0910 25 1 -0.3634 0.5906 0.8409 26 1 3.6947 0.9796 -1.5830 27 1 4.3772 2.0808 -2.8074 28 1 2.4171 -0.2081 -3.3016 29 1 4.1268 -0.1482 -3.7950 30 1 3.6335 1.8328 -5.2183 31 1 2.6561 0.4246 -5.6974 32 1 0.7469 0.0520 -7.8153 33 1 2.5429 3.7471 -3.9640 34 1 0.8803 3.5386 -3.3600 35 1 1.9009 3.5269 1.3677 36 1 1.9993 1.9031 2.2363 37 1 4.1816 1.3985 1.0454 38 1 4.0829 3.0225 0.1767 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597906744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:49 Heat of formation + Delta-G solvation = -14.086562 kcal Electronic energy + Delta-G solvation = -19372.839810 eV Core-core repulsion = 16535.133589 eV Total energy + Delta-G solvation = -2837.706221 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.90842 -37.14190 -36.05217 -33.43364 -31.28780 -30.20848 -28.83021 -25.76774 -25.00001 -23.10258 -22.65718 -21.60429 -19.78684 -18.57385 -17.26438 -16.39143 -15.85035 -15.55446 -15.01097 -14.58409 -14.16731 -13.74788 -13.47421 -13.31118 -13.19019 -12.92482 -12.73696 -12.27074 -12.09758 -11.95202 -11.74029 -11.32911 -10.98068 -10.87176 -10.74476 -10.61354 -10.24286 -10.21203 -9.92990 -9.77121 -9.45696 -9.29765 -8.82672 -8.38720 -7.92003 -7.61493 -6.01968 -4.09477 1.52472 2.29668 3.11591 3.29118 3.32937 3.36337 3.40500 3.61144 4.41910 4.58244 4.60048 4.70177 5.21615 5.26995 5.27556 5.35089 5.41456 5.52674 5.68018 5.73185 5.85361 5.90912 5.92815 6.13923 6.36640 6.41895 6.54235 6.66634 6.85135 6.96069 7.20953 7.35291 7.69288 7.90553 7.98444 8.08474 8.36350 8.56010 8.94011 9.55409 11.03311 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029158 B = 0.005418 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.067788 B = 5166.823216 C = 5271.844852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 S -0.173 6.173 3 C -0.149 4.149 4 C 0.545 3.455 5 O -0.547 6.547 6 N -0.587 5.587 7 C 0.112 3.888 8 C -0.132 4.132 9 C -0.113 4.113 10 C 0.042 3.958 11 H 0.029 0.971 12 C -0.515 4.515 13 H 0.056 0.944 14 C 0.064 3.936 15 N -0.888 5.888 16 Si 0.892 3.108 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.117 3.883 21 C -0.130 4.130 22 C -0.127 4.127 23 H 0.081 0.919 24 H 0.102 0.898 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.059 0.941 28 H 0.063 0.937 29 H 0.055 0.945 30 H 0.034 0.966 31 H 0.095 0.905 32 H 0.260 0.740 33 H 0.056 0.944 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.530 -1.290 14.371 15.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.296 4.296 2 S 0.056 5.944 3 C -0.262 4.262 4 C 0.329 3.671 5 O -0.426 6.426 6 N -0.317 5.317 7 C -0.012 4.012 8 C -0.170 4.170 9 C -0.151 4.151 10 C 0.023 3.977 11 H 0.047 0.953 12 C -0.554 4.554 13 H 0.075 0.925 14 C -0.138 4.138 15 N -0.526 5.526 16 Si 0.720 3.280 17 H -0.207 1.207 18 H -0.212 1.212 19 H -0.199 1.199 20 C -0.004 4.004 21 C -0.170 4.170 22 C -0.165 4.165 23 H 0.100 0.900 24 H 0.120 0.880 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.114 0.886 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.125 0.875 36 H 0.128 0.872 37 H 0.129 0.871 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 5.687 -1.949 14.278 15.492 hybrid contribution -1.091 1.258 -1.072 1.981 sum 4.597 -0.691 13.205 14.000 Atomic orbital electron populations 1.23441 0.94183 1.06104 1.05908 1.86279 1.07726 1.03067 1.97333 1.23547 1.08592 0.96578 0.97527 1.19227 0.82659 0.81957 0.83272 1.90664 1.30419 1.36851 1.84660 1.48149 1.29941 1.46102 1.07533 1.21788 0.86934 0.92281 1.00153 1.21968 1.00817 0.97354 0.96875 1.21636 0.97551 1.00175 0.95695 1.18962 0.94204 0.92617 0.91943 0.95312 1.21072 1.45994 0.93168 0.95122 0.92529 1.24930 0.95219 0.94811 0.98793 1.69877 1.48950 1.04292 1.29526 0.86588 0.78499 0.79460 0.83424 1.20666 1.21234 1.19889 1.22050 0.98584 0.96331 0.83422 1.23248 0.99423 1.01830 0.92509 1.23035 0.89354 1.03056 1.01079 0.89960 0.87974 0.90251 0.90573 0.92288 0.91853 0.92603 0.94719 0.88628 0.92967 0.92565 0.90501 0.87495 0.87172 0.87073 0.87431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.67 10.66 101.05 1.08 -0.60 16 2 S -0.17 -2.39 21.27 -107.50 -2.29 -4.67 16 3 C -0.15 -2.13 1.11 -91.77 -0.10 -2.23 16 4 C 0.55 10.12 6.85 -10.99 -0.08 10.05 16 5 O -0.55 -11.93 16.28 5.56 0.09 -11.84 16 6 N -0.59 -11.15 2.97 -172.77 -0.51 -11.66 16 7 C 0.11 1.83 6.11 -3.71 -0.02 1.81 16 8 C -0.13 -2.44 6.08 -26.61 -0.16 -2.60 16 9 C -0.11 -2.55 4.96 -26.69 -0.13 -2.68 16 10 C 0.04 1.03 2.25 -91.65 -0.21 0.83 16 11 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 12 C -0.51 -13.97 8.56 -34.44 -0.29 -14.26 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 15 N -0.89 -24.94 11.31 55.43 0.63 -24.31 16 16 Si 0.89 21.11 29.54 -169.99 -5.02 16.09 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 20 C 0.12 2.56 5.64 -3.71 -0.02 2.54 16 21 C -0.13 -1.49 9.84 -26.73 -0.26 -1.76 16 22 C -0.13 -1.37 9.02 -26.73 -0.24 -1.61 16 23 H 0.08 1.28 8.14 -51.92 -0.42 0.86 16 24 H 0.10 1.11 8.14 -51.92 -0.42 0.69 16 25 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 26 H 0.08 1.11 4.88 -51.93 -0.25 0.85 16 27 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.10 2.45 6.04 -51.93 -0.31 2.14 16 32 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 33 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 34 H 0.08 1.81 7.05 -51.93 -0.37 1.44 16 35 H 0.11 1.30 8.10 -51.93 -0.42 0.87 16 36 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 318.90 15.07 4.81 4.81 Total: -1.00 -29.85 318.90 -8.80 -38.66 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -5.97 Total: 1.80 kcal Atomic # 6 Polarization: -8.33 SS G_CDS: -0.54 Total: -8.86 kcal Atomic # 7 Polarization: -36.09 SS G_CDS: 0.11 Total: -35.98 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: 0.09 Total: -11.84 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: -2.39 SS G_CDS: -2.29 Total: -4.67 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -29.85 -8.80 -38.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.570 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds