Wall clock time and date at job start Mon Mar 30 2020 00:58:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81391 * 1 3 3 C 1.81404 * 103.00064 * 2 1 4 4 C 1.50700 * 115.54784 * 297.99630 * 3 2 1 5 5 O 1.21283 * 119.99916 * 108.82957 * 4 3 2 6 6 N 1.34776 * 119.99754 * 288.82869 * 4 3 2 7 7 C 1.46928 * 120.63328 * 354.99638 * 6 4 3 8 8 C 1.53188 * 108.77425 * 126.41346 * 7 6 4 9 9 C 1.53049 * 109.31382 * 54.63476 * 8 7 6 10 10 C 1.53040 * 109.53555 * 298.63600 * 9 8 7 11 11 H 1.08998 * 109.49643 * 301.40778 * 10 9 8 12 12 C 1.50707 * 109.49222 * 181.31281 * 10 9 8 13 13 H 1.07997 * 119.99951 * 239.99675 * 12 10 9 14 14 C 1.37877 * 119.99672 * 60.00431 * 12 10 9 15 15 N 1.31518 * 120.00414 * 359.97438 * 14 12 10 16 16 Si 1.86801 * 119.99731 * 179.97438 * 14 12 10 17 17 H 1.48499 * 109.47215 * 89.99501 * 16 14 12 18 18 H 1.48504 * 109.47068 * 209.99826 * 16 14 12 19 19 H 1.48505 * 109.47111 * 329.99517 * 16 14 12 20 20 C 1.46926 * 120.62897 * 175.02226 * 6 4 3 21 21 C 1.52996 * 117.51611 * 83.69612 * 3 2 1 22 22 C 1.52997 * 60.00345 * 107.48389 * 21 3 2 23 23 H 1.09005 * 109.47439 * 65.08300 * 1 2 3 24 24 H 1.09000 * 109.47356 * 185.07857 * 1 2 3 25 25 H 1.08996 * 109.47613 * 305.08009 * 1 2 3 26 26 H 1.08996 * 109.58230 * 6.62897 * 7 6 4 27 27 H 1.09003 * 109.58658 * 246.20193 * 7 6 4 28 28 H 1.09003 * 109.49765 * 294.68568 * 8 7 6 29 29 H 1.08998 * 109.49853 * 174.58991 * 8 7 6 30 30 H 1.08999 * 109.45700 * 58.65309 * 9 8 7 31 31 H 1.08993 * 109.46197 * 178.62642 * 9 8 7 32 32 H 0.96994 * 119.99754 * 179.97438 * 15 14 12 33 33 H 1.08998 * 109.59228 * 113.79615 * 20 6 4 34 34 H 1.09004 * 109.70694 * 353.43817 * 20 6 4 35 35 H 1.09003 * 117.49798 * 214.97294 * 21 3 2 36 36 H 1.08998 * 117.50386 * 359.97438 * 21 3 2 37 37 H 1.09004 * 117.49783 * 252.51432 * 22 21 3 38 38 H 1.08999 * 117.50123 * 107.48713 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2220 1.7675 0.0000 4 6 1.7463 2.5444 -1.2005 5 8 0.8353 3.3370 -1.0879 6 7 2.3333 2.3583 -2.3994 7 6 3.5075 1.4848 -2.5305 8 6 3.2293 0.4451 -3.6206 9 6 2.8310 1.1612 -4.9133 10 6 1.5523 1.9685 -4.6781 11 1 0.7560 1.3009 -4.3491 12 6 1.1432 2.6473 -5.9599 13 1 1.0720 3.7241 -6.0018 14 6 0.8597 1.8935 -7.0790 15 7 0.9467 0.5822 -7.0281 16 14 0.3519 2.7349 -8.6676 17 1 1.5600 3.0319 -9.4786 18 1 -0.5516 1.8401 -9.4348 19 1 -0.3565 4.0015 -8.3525 20 6 1.8116 3.0255 -3.6000 21 6 2.2358 2.4898 1.3487 22 6 3.5520 2.1856 0.6304 23 1 -0.3634 0.4330 -0.9320 24 1 -0.3634 -1.0236 0.0910 25 1 -0.3634 0.5906 0.8409 26 1 3.6947 0.9796 -1.5830 27 1 4.3772 2.0808 -2.8074 28 1 2.4171 -0.2081 -3.3016 29 1 4.1268 -0.1482 -3.7950 30 1 3.6335 1.8328 -5.2183 31 1 2.6561 0.4246 -5.6974 32 1 0.7469 0.0520 -7.8153 33 1 2.5429 3.7471 -3.9640 34 1 0.8803 3.5386 -3.3600 35 1 1.9009 3.5269 1.3677 36 1 1.9993 1.9031 2.2363 37 1 4.1816 1.3985 1.0454 38 1 4.0829 3.0225 0.1767 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597906744.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:58:49 Heat of formation + Delta-G solvation = -30.863716 kcal Electronic energy + Delta-G solvation = -19373.567322 eV Core-core repulsion = 16535.133589 eV Total energy + Delta-G solvation = -2838.433733 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.35041 -38.67001 -37.28415 -35.33885 -33.03003 -32.00399 -29.88680 -27.46482 -26.71562 -24.53694 -23.61983 -23.20665 -21.38787 -20.06747 -18.78013 -18.19252 -17.21892 -16.97129 -16.57685 -16.10589 -15.54943 -15.22066 -15.00104 -14.62786 -14.57186 -14.40468 -14.25947 -13.75319 -13.60854 -13.50220 -12.87421 -12.72644 -12.66388 -12.57830 -12.29971 -11.92778 -11.87592 -11.64640 -11.61873 -11.44661 -11.16482 -10.85964 -10.62935 -10.43301 -9.54657 -8.70406 -8.11412 -6.27270 0.43953 1.16568 1.40157 1.41205 1.51286 1.81218 1.98106 2.42251 2.55940 3.14795 3.36392 3.54957 3.79725 4.11650 4.17010 4.23547 4.27163 4.30881 4.48527 4.53918 4.60341 4.62451 4.78561 4.79378 4.82688 4.86732 4.98802 5.10457 5.10811 5.29023 5.45581 5.55816 5.60571 5.91536 6.12170 6.32581 6.47002 6.81645 7.07959 7.40998 8.92123 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029158 B = 0.005418 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.067788 B = 5166.823216 C = 5271.844852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 S -0.165 6.165 3 C -0.177 4.177 4 C 0.540 3.460 5 O -0.589 6.589 6 N -0.592 5.592 7 C 0.115 3.885 8 C -0.123 4.123 9 C -0.105 4.105 10 C 0.044 3.956 11 H -0.015 1.015 12 C -0.539 4.539 13 H 0.052 0.948 14 C 0.018 3.982 15 N -0.912 5.912 16 Si 0.955 3.045 17 H -0.270 1.270 18 H -0.283 1.283 19 H -0.272 1.272 20 C 0.130 3.870 21 C -0.119 4.119 22 C -0.101 4.101 23 H 0.047 0.953 24 H 0.123 0.877 25 H 0.090 0.910 26 H 0.103 0.897 27 H 0.081 0.919 28 H 0.045 0.955 29 H 0.087 0.913 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.262 0.738 33 H 0.064 0.936 34 H 0.051 0.949 35 H 0.097 0.903 36 H 0.134 0.866 37 H 0.139 0.861 38 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.437 -1.523 15.744 17.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.298 4.298 2 S 0.064 5.936 3 C -0.289 4.289 4 C 0.326 3.674 5 O -0.471 6.471 6 N -0.322 5.322 7 C -0.007 4.007 8 C -0.162 4.162 9 C -0.143 4.143 10 C 0.025 3.975 11 H 0.003 0.997 12 C -0.578 4.578 13 H 0.070 0.930 14 C -0.181 4.181 15 N -0.551 5.551 16 Si 0.781 3.219 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.197 1.197 20 C 0.008 3.992 21 C -0.159 4.159 22 C -0.139 4.139 23 H 0.066 0.934 24 H 0.142 0.858 25 H 0.109 0.891 26 H 0.121 0.879 27 H 0.099 0.901 28 H 0.064 0.936 29 H 0.105 0.895 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.115 0.885 36 H 0.152 0.848 37 H 0.157 0.843 38 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.620 -2.197 15.667 17.560 hybrid contribution -1.741 1.322 -1.494 2.648 sum 5.879 -0.875 14.173 15.369 Atomic orbital electron populations 1.23474 0.94356 1.07437 1.04485 1.86163 1.07679 1.02550 1.97193 1.23467 1.12282 0.96488 0.96698 1.20002 0.81723 0.81495 0.84156 1.90631 1.32132 1.38826 1.85476 1.48202 1.30741 1.46361 1.06890 1.21948 0.86379 0.91678 1.00651 1.21860 1.01453 0.97604 0.95236 1.21431 0.96408 0.99308 0.97133 1.18844 0.93942 0.92696 0.91983 0.99715 1.21421 1.46607 0.93206 0.96518 0.92971 1.25685 0.95139 0.95416 1.01876 1.70014 1.49346 1.05425 1.30334 0.85601 0.78387 0.78364 0.79570 1.19570 1.20900 1.19726 1.21611 0.97889 0.95577 0.84159 1.23369 0.99669 1.01259 0.91614 1.23275 0.88400 1.03497 0.98773 0.93411 0.85832 0.89105 0.87880 0.90058 0.93595 0.89501 0.94364 0.91814 0.92896 0.91765 0.93083 0.88487 0.84818 0.84254 0.86793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.32 10.66 113.37 1.21 -2.11 16 2 S -0.16 -4.22 21.27 -56.49 -1.20 -5.42 16 3 C -0.18 -4.66 1.11 -11.54 -0.01 -4.68 16 4 C 0.54 19.94 6.85 87.66 0.60 20.54 16 5 O -0.59 -26.37 16.28 -3.04 -0.05 -26.41 16 6 N -0.59 -22.35 2.97 -818.91 -2.43 -24.78 16 7 C 0.12 3.53 6.11 86.36 0.53 4.05 16 8 C -0.12 -4.42 6.08 30.67 0.19 -4.23 16 9 C -0.10 -4.80 4.96 30.62 0.15 -4.65 16 10 C 0.04 2.29 2.25 -11.46 -0.03 2.26 16 11 H -0.02 -0.91 8.14 -2.39 -0.02 -0.93 16 12 C -0.54 -30.19 8.56 25.60 0.22 -29.97 16 13 H 0.05 2.88 7.74 -2.91 -0.02 2.86 16 14 C 0.02 1.01 5.30 84.65 0.45 1.46 16 15 N -0.91 -52.59 11.31 21.45 0.24 -52.35 16 16 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 17 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 20 C 0.13 5.87 5.64 86.36 0.49 6.36 16 21 C -0.12 -2.40 9.84 30.59 0.30 -2.10 16 22 C -0.10 -1.79 9.02 30.59 0.28 -1.51 16 23 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 24 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 25 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 26 H 0.10 2.64 4.88 -2.39 -0.01 2.63 16 27 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.09 2.59 8.14 -2.39 -0.02 2.57 16 30 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 31 H 0.06 3.35 6.04 -2.39 -0.01 3.33 16 32 H 0.26 14.33 8.31 -92.71 -0.77 13.56 16 33 H 0.06 2.76 8.14 -2.39 -0.02 2.74 16 34 H 0.05 2.53 7.05 -2.38 -0.02 2.52 16 35 H 0.10 2.18 8.10 -2.39 -0.02 2.16 16 36 H 0.13 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 38 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 Total: -1.00 -67.69 318.90 3.99 -63.70 By element: Atomic # 1 Polarization: 12.93 SS G_CDS: 1.03 Total: 13.96 kcal Atomic # 6 Polarization: -18.94 SS G_CDS: 4.37 Total: -14.57 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -2.19 Total: -77.13 kcal Atomic # 8 Polarization: -26.37 SS G_CDS: -0.05 Total: -26.41 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: -4.22 SS G_CDS: -1.20 Total: -5.42 kcal Total: -67.69 3.99 -63.70 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597906744.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.839 kcal (2) G-P(sol) polarization free energy of solvation -67.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds