Wall clock time and date at job start Mon Mar 30 2020 00:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46501 * 119.99761 * 2 1 4 4 C 1.50693 * 109.47177 * 269.99997 * 3 2 1 5 5 H 1.08008 * 120.00083 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00099 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99594 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99931 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47005 * 90.00722 * 8 6 4 10 10 H 1.48498 * 109.46998 * 209.99993 * 8 6 4 11 11 H 1.48492 * 109.47434 * 330.00481 * 8 6 4 12 12 C 1.34778 * 119.99922 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00013 * 179.97438 * 12 2 1 14 14 C 1.50707 * 119.99890 * 359.97438 * 12 2 1 15 15 N 1.46503 * 109.46690 * 180.02562 * 14 12 2 16 16 C 1.47317 * 126.68513 * 269.98018 * 15 14 12 17 17 C 1.51581 * 103.58722 * 179.84385 * 16 15 14 18 18 O 1.21243 * 127.15351 * 180.24592 * 17 16 15 19 19 N 1.34766 * 105.69005 * 0.31936 * 17 16 15 20 20 C 1.46499 * 124.17994 * 179.97438 * 19 17 16 21 21 C 1.33791 * 111.64117 * 359.66261 * 19 17 16 22 22 O 1.21540 * 123.76923 * 180.23040 * 21 19 17 23 23 H 1.08998 * 109.46689 * 269.99768 * 1 2 3 24 24 H 1.08998 * 109.47288 * 29.99409 * 1 2 3 25 25 H 1.08993 * 109.46866 * 150.00186 * 1 2 3 26 26 H 1.08993 * 109.47039 * 30.00507 * 3 2 1 27 27 H 1.09001 * 109.46481 * 150.00394 * 3 2 1 28 28 H 0.97006 * 119.99368 * 179.97438 * 7 6 4 29 29 H 1.08990 * 109.46764 * 60.00332 * 14 12 2 30 30 H 1.08996 * 109.47052 * 300.00252 * 14 12 2 31 31 H 1.09003 * 110.59914 * 298.56213 * 16 15 14 32 32 H 1.08994 * 110.60091 * 61.51062 * 16 15 14 33 33 H 1.09002 * 109.47391 * 269.70277 * 20 19 17 34 34 H 1.09001 * 109.46813 * 149.70333 * 20 19 17 35 35 H 1.09004 * 109.47041 * 29.70461 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0974 1.0962 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5550 3.6171 -0.6730 8 14 3.4388 3.4164 -3.4339 9 1 2.3092 4.2598 -3.9009 10 1 4.6994 4.1989 -3.4962 11 1 3.5557 2.2192 -4.3045 12 6 2.1389 -1.1672 -0.0005 13 8 3.3518 -1.1672 -0.0010 14 6 1.3854 -2.4724 -0.0005 15 7 2.3374 -3.5858 -0.0005 16 6 2.9091 -4.2550 -1.1819 17 6 3.8184 -5.3120 -0.5872 18 8 4.5064 -6.1087 -1.1889 19 7 3.7017 -5.1832 0.7492 20 6 4.4147 -6.0152 1.7216 21 6 2.8594 -4.1971 1.0781 22 8 2.5954 -3.8881 2.2236 23 1 -0.3632 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6085 2.0283 0.5139 27 1 3.1500 1.1383 0.5138 28 1 4.0325 4.4427 -0.8503 29 1 0.7585 -2.5298 -0.8902 30 1 0.7591 -2.5302 0.8896 31 1 2.1224 -4.7143 -1.7806 32 1 3.4857 -3.5500 -1.7805 33 1 3.8108 -6.8899 1.9635 34 1 4.5981 -5.4384 2.6280 35 1 5.3657 -6.3366 1.2967 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599151390.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:17 Heat of formation + Delta-G solvation = -58.911885 kcal Electronic energy + Delta-G solvation = -20832.516865 eV Core-core repulsion = 17446.573658 eV Total energy + Delta-G solvation = -3385.943207 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -42.31014 -39.16054 -38.47846 -36.12979 -35.29113 -34.76286 -32.68842 -30.46584 -28.05057 -27.21097 -26.56698 -25.56326 -23.08482 -22.26824 -20.44058 -18.76939 -17.57779 -17.32163 -16.72322 -16.58332 -16.27178 -15.65213 -15.53340 -14.77892 -14.60761 -14.23199 -14.20899 -13.98529 -13.71377 -12.87998 -12.86489 -12.70705 -12.62781 -12.24569 -11.92865 -11.81293 -11.25219 -10.96608 -10.91608 -10.62853 -10.29747 -10.21180 -9.89226 -9.72564 -9.64031 -8.64419 -8.47976 -7.73919 -6.08648 -4.14082 1.56443 1.98025 2.83862 2.99198 3.24315 3.26826 3.34095 3.37675 3.89936 3.98210 4.40206 4.59980 4.88129 4.99212 5.04922 5.15388 5.21679 5.24855 5.26297 5.41146 5.48069 5.54086 5.75591 5.86769 6.12440 6.27955 6.97579 7.04787 7.25725 7.39031 7.44920 7.86688 8.04152 8.17475 8.29927 8.82282 8.97067 9.51061 10.99508 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025092 B = 0.004757 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.613608 B = 5884.613208 C = 6340.530635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.599 5.599 3 C 0.245 3.755 4 C -0.528 4.528 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.484 3.516 13 O -0.531 6.531 14 C 0.132 3.868 15 N -0.605 5.605 16 C 0.064 3.936 17 C 0.528 3.472 18 O -0.477 6.477 19 N -0.579 5.579 20 C 0.090 3.910 21 C 0.706 3.294 22 O -0.541 6.541 23 H 0.048 0.952 24 H 0.077 0.923 25 H 0.056 0.944 26 H 0.034 0.966 27 H 0.043 0.957 28 H 0.264 0.736 29 H 0.113 0.887 30 H 0.114 0.886 31 H 0.124 0.876 32 H 0.128 0.872 33 H 0.071 0.929 34 H 0.089 0.911 35 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.615 -16.325 0.825 17.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.332 5.332 3 C 0.126 3.874 4 C -0.567 4.567 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.532 5.532 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.268 3.732 13 O -0.408 6.408 14 C 0.007 3.993 15 N -0.343 5.343 16 C -0.062 4.062 17 C 0.315 3.685 18 O -0.348 6.348 19 N -0.325 5.325 20 C -0.051 4.051 21 C 0.408 3.592 22 O -0.414 6.414 23 H 0.067 0.933 24 H 0.096 0.904 25 H 0.075 0.925 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.131 0.869 30 H 0.132 0.868 31 H 0.142 0.858 32 H 0.146 0.854 33 H 0.089 0.911 34 H 0.108 0.892 35 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.688 -16.340 1.233 17.346 hybrid contribution 0.176 0.558 -1.002 1.160 sum -5.512 -15.783 0.231 16.719 Atomic orbital electron populations 1.21702 0.81208 1.02711 1.00784 1.48174 1.06275 1.07686 1.71097 1.19315 0.92616 0.77865 0.97572 1.21400 1.36750 1.06371 0.92158 0.92452 1.24947 0.95306 0.96401 0.97460 1.69936 1.38173 1.14341 1.30778 0.86487 0.77729 0.78593 0.84532 1.20602 1.21081 1.19921 1.20718 0.88669 0.85420 0.78407 1.90693 1.13679 1.86897 1.49517 1.21315 0.89488 0.82954 1.05510 1.46999 1.47197 1.34598 1.05485 1.22533 0.98201 0.94905 0.90545 1.20867 0.81590 0.83866 0.82136 1.90800 1.39820 1.37977 1.66215 1.46221 1.42999 1.33927 1.09403 1.21800 0.96843 0.94293 0.92192 1.15739 0.78937 0.79181 0.85360 1.90969 1.63991 1.67707 1.18744 0.93346 0.90417 0.92501 0.94835 0.93853 0.92649 0.86871 0.86796 0.85837 0.85417 0.91052 0.89198 0.89500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.12 10.24 59.85 0.61 1.74 16 2 N -0.60 -12.02 2.86 -182.96 -0.52 -12.55 16 3 C 0.25 6.29 5.16 -5.20 -0.03 6.26 16 4 C -0.53 -14.55 9.39 -34.44 -0.32 -14.88 16 5 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 6 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 7 N -0.89 -26.33 13.29 55.43 0.74 -25.59 16 8 Si 0.90 21.42 29.54 -169.99 -5.02 16.40 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 11 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.48 9.49 7.74 -10.98 -0.09 9.41 16 13 O -0.53 -13.04 16.01 5.56 0.09 -12.95 16 14 C 0.13 1.75 5.18 -5.19 -0.03 1.72 16 15 N -0.61 -8.32 2.51 -181.40 -0.45 -8.77 16 16 C 0.06 0.70 7.66 -4.31 -0.03 0.67 16 17 C 0.53 6.66 8.31 -10.56 -0.09 6.57 16 18 O -0.48 -6.90 17.75 5.59 0.10 -6.80 16 19 N -0.58 -7.57 3.00 -128.16 -0.39 -7.96 16 20 C 0.09 0.90 10.73 59.85 0.64 1.54 16 21 C 0.71 10.91 8.31 -88.02 -0.73 10.18 16 22 O -0.54 -9.99 17.15 5.33 0.09 -9.90 16 23 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 24 H 0.08 1.14 8.07 -51.93 -0.42 0.72 16 25 H 0.06 0.58 6.44 -51.93 -0.33 0.24 16 26 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 27 H 0.04 1.28 7.42 -51.93 -0.39 0.89 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.11 1.04 7.40 -51.93 -0.38 0.66 16 30 H 0.11 1.35 7.99 -51.93 -0.42 0.94 16 31 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.13 1.48 8.14 -51.93 -0.42 1.06 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.09 0.92 7.86 -51.93 -0.41 0.51 16 35 H 0.09 0.78 8.00 -51.93 -0.42 0.36 16 LS Contribution 311.56 15.07 4.70 4.70 Total: -1.00 -37.15 311.56 -5.25 -42.39 By element: Atomic # 1 Polarization: 0.63 SS G_CDS: -4.42 Total: -3.79 kcal Atomic # 6 Polarization: 24.98 SS G_CDS: -0.16 Total: 24.83 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.63 Total: -54.88 kcal Atomic # 8 Polarization: -29.93 SS G_CDS: 0.28 Total: -29.65 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -37.15 -5.25 -42.39 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599151390.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.519 kcal (2) G-P(sol) polarization free energy of solvation -37.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds