Wall clock time and date at job start Mon Mar 30 2020 00:50:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46501 * 119.99761 * 2 1 4 4 C 1.50693 * 109.47177 * 269.99997 * 3 2 1 5 5 H 1.08008 * 120.00083 * 0.02562 * 4 3 2 6 6 C 1.37880 * 120.00099 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99594 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 119.99931 * 179.97438 * 6 4 3 9 9 H 1.48506 * 109.47005 * 90.00722 * 8 6 4 10 10 H 1.48498 * 109.46998 * 209.99993 * 8 6 4 11 11 H 1.48492 * 109.47434 * 330.00481 * 8 6 4 12 12 C 1.34778 * 119.99922 * 180.02562 * 2 1 3 13 13 O 1.21283 * 120.00013 * 179.97438 * 12 2 1 14 14 C 1.50707 * 119.99890 * 359.97438 * 12 2 1 15 15 N 1.46503 * 109.46690 * 180.02562 * 14 12 2 16 16 C 1.47317 * 126.68513 * 269.98018 * 15 14 12 17 17 C 1.51581 * 103.58722 * 179.84385 * 16 15 14 18 18 O 1.21243 * 127.15351 * 180.24592 * 17 16 15 19 19 N 1.34766 * 105.69005 * 0.31936 * 17 16 15 20 20 C 1.46499 * 124.17994 * 179.97438 * 19 17 16 21 21 C 1.33791 * 111.64117 * 359.66261 * 19 17 16 22 22 O 1.21540 * 123.76923 * 180.23040 * 21 19 17 23 23 H 1.08998 * 109.46689 * 269.99768 * 1 2 3 24 24 H 1.08998 * 109.47288 * 29.99409 * 1 2 3 25 25 H 1.08993 * 109.46866 * 150.00186 * 1 2 3 26 26 H 1.08993 * 109.47039 * 30.00507 * 3 2 1 27 27 H 1.09001 * 109.46481 * 150.00394 * 3 2 1 28 28 H 0.97006 * 119.99368 * 179.97438 * 7 6 4 29 29 H 1.08990 * 109.46764 * 60.00332 * 14 12 2 30 30 H 1.08996 * 109.47052 * 300.00252 * 14 12 2 31 31 H 1.09003 * 110.59914 * 298.56213 * 16 15 14 32 32 H 1.08994 * 110.60091 * 61.51062 * 16 15 14 33 33 H 1.09002 * 109.47391 * 269.70277 * 20 19 17 34 34 H 1.09001 * 109.46813 * 149.70333 * 20 19 17 35 35 H 1.09004 * 109.47041 * 29.70461 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4487 1.7038 -1.4207 5 1 2.0974 1.0962 -2.2417 6 6 3.1269 2.8775 -1.6727 7 7 3.5550 3.6171 -0.6730 8 14 3.4388 3.4164 -3.4339 9 1 2.3092 4.2598 -3.9009 10 1 4.6994 4.1989 -3.4962 11 1 3.5557 2.2192 -4.3045 12 6 2.1389 -1.1672 -0.0005 13 8 3.3518 -1.1672 -0.0010 14 6 1.3854 -2.4724 -0.0005 15 7 2.3374 -3.5858 -0.0005 16 6 2.9091 -4.2550 -1.1819 17 6 3.8184 -5.3120 -0.5872 18 8 4.5064 -6.1087 -1.1889 19 7 3.7017 -5.1832 0.7492 20 6 4.4147 -6.0152 1.7216 21 6 2.8594 -4.1971 1.0781 22 8 2.5954 -3.8881 2.2236 23 1 -0.3632 0.0000 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6085 2.0283 0.5139 27 1 3.1500 1.1383 0.5138 28 1 4.0325 4.4427 -0.8503 29 1 0.7585 -2.5298 -0.8902 30 1 0.7591 -2.5302 0.8896 31 1 2.1224 -4.7143 -1.7806 32 1 3.4857 -3.5500 -1.7805 33 1 3.8108 -6.8899 1.9635 34 1 4.5981 -5.4384 2.6280 35 1 5.3657 -6.3366 1.2967 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000599151390.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:50:17 Heat of formation + Delta-G solvation = -86.786370 kcal Electronic energy + Delta-G solvation = -20833.725594 eV Core-core repulsion = 17446.573658 eV Total energy + Delta-G solvation = -3387.151936 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.35886 -40.61962 -39.66490 -37.31155 -36.65534 -36.11836 -34.72152 -31.64809 -29.73712 -28.15272 -27.71322 -27.05176 -24.80277 -23.46482 -21.57002 -20.18618 -18.72264 -18.62082 -18.45323 -17.77052 -17.61352 -17.06114 -16.80951 -16.32571 -16.11648 -15.52954 -15.28846 -15.01991 -14.90534 -14.39274 -14.17782 -13.78397 -13.67562 -13.54302 -13.44355 -13.12463 -13.05377 -12.76386 -12.50419 -12.19100 -12.07783 -11.69194 -11.40169 -11.08946 -10.91192 -10.63579 -9.93505 -9.41581 -8.21404 -6.36554 0.53448 0.97484 1.38448 1.41490 1.51419 1.78999 1.83785 1.91843 2.35540 2.52926 3.01620 3.08851 3.66865 3.69804 4.14786 4.22439 4.32203 4.35795 4.41261 4.48396 4.52262 4.69080 4.77756 4.81638 4.99034 5.04154 5.22771 5.26602 5.56719 5.83549 5.98847 6.06058 6.26572 6.69691 6.77411 6.93718 7.28810 7.45625 8.85966 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025092 B = 0.004757 C = 0.004415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.613608 B = 5884.613208 C = 6340.530635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.607 5.607 3 C 0.259 3.741 4 C -0.538 4.538 5 H 0.061 0.939 6 C 0.004 3.996 7 N -0.933 5.933 8 Si 0.970 3.030 9 H -0.263 1.263 10 H -0.286 1.286 11 H -0.268 1.268 12 C 0.471 3.529 13 O -0.595 6.595 14 C 0.145 3.855 15 N -0.606 5.606 16 C 0.068 3.932 17 C 0.529 3.471 18 O -0.498 6.498 19 N -0.582 5.582 20 C 0.083 3.917 21 C 0.698 3.302 22 O -0.580 6.580 23 H 0.068 0.932 24 H 0.068 0.932 25 H 0.108 0.892 26 H 0.022 0.978 27 H -0.010 1.010 28 H 0.266 0.734 29 H 0.169 0.831 30 H 0.135 0.865 31 H 0.176 0.824 32 H 0.122 0.878 33 H 0.093 0.907 34 H 0.082 0.918 35 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.677 -17.765 -1.131 19.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.339 5.339 3 C 0.137 3.863 4 C -0.577 4.577 5 H 0.079 0.921 6 C -0.195 4.195 7 N -0.573 5.573 8 Si 0.794 3.206 9 H -0.188 1.188 10 H -0.212 1.212 11 H -0.193 1.193 12 C 0.259 3.741 13 O -0.476 6.476 14 C 0.021 3.979 15 N -0.342 5.342 16 C -0.057 4.057 17 C 0.318 3.682 18 O -0.370 6.370 19 N -0.327 5.327 20 C -0.057 4.057 21 C 0.401 3.599 22 O -0.456 6.456 23 H 0.086 0.914 24 H 0.087 0.913 25 H 0.126 0.874 26 H 0.040 0.960 27 H 0.008 0.992 28 H 0.075 0.925 29 H 0.187 0.813 30 H 0.152 0.848 31 H 0.193 0.807 32 H 0.140 0.860 33 H 0.112 0.888 34 H 0.101 0.899 35 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -7.806 -17.813 -0.742 19.463 hybrid contribution 0.831 0.991 -0.326 1.334 sum -6.975 -16.823 -1.068 18.243 Atomic orbital electron populations 1.22059 0.77215 1.04834 1.02807 1.48191 1.08726 1.06070 1.70890 1.18738 0.90891 0.80516 0.96175 1.21711 1.36562 1.06452 0.92926 0.92063 1.25916 0.94988 0.96568 1.01995 1.70076 1.39069 1.14877 1.33238 0.85376 0.77864 0.78325 0.78999 1.18768 1.21219 1.19268 1.21972 0.88393 0.87214 0.76537 1.90661 1.16728 1.87991 1.52176 1.21477 0.88651 0.78748 1.09066 1.47177 1.46942 1.34197 1.05925 1.22783 0.99214 0.94049 0.89641 1.21121 0.81348 0.83869 0.81843 1.90795 1.40740 1.39052 1.66409 1.46356 1.42534 1.33626 1.10214 1.22014 0.97592 0.94588 0.91552 1.16001 0.79061 0.79579 0.85286 1.90935 1.65368 1.68979 1.20337 0.91371 0.91305 0.87370 0.96010 0.99169 0.92538 0.81341 0.84766 0.80730 0.85984 0.88807 0.89919 0.88576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.82 10.24 127.77 1.31 3.13 16 2 N -0.61 -23.97 2.86 -851.13 -2.43 -26.40 16 3 C 0.26 13.72 5.16 85.63 0.44 14.17 16 4 C -0.54 -30.02 9.39 25.60 0.24 -29.78 16 5 H 0.06 3.29 7.81 -2.91 -0.02 3.26 16 6 C 0.00 0.22 5.46 84.66 0.46 0.68 16 7 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 8 Si 0.97 43.88 29.54 68.60 2.03 45.91 16 9 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 10 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 12 C 0.47 18.10 7.74 87.66 0.68 18.78 16 13 O -0.59 -29.96 16.01 -3.04 -0.05 -30.01 16 14 C 0.14 3.31 5.18 85.63 0.44 3.75 16 15 N -0.61 -15.11 2.51 -846.24 -2.12 -17.23 16 16 C 0.07 1.27 7.66 85.76 0.66 1.93 16 17 C 0.53 12.43 8.31 87.94 0.73 13.17 16 18 O -0.50 -13.65 17.75 -2.92 -0.05 -13.70 16 19 N -0.58 -14.59 3.00 -796.64 -2.39 -16.99 16 20 C 0.08 1.60 10.73 127.77 1.37 2.97 16 21 C 0.70 20.84 8.31 179.44 1.49 22.33 16 22 O -0.58 -21.30 17.15 -3.84 -0.07 -21.37 16 23 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 24 H 0.07 1.87 8.07 -2.39 -0.02 1.85 16 25 H 0.11 1.60 6.44 -2.39 -0.02 1.58 16 26 H 0.02 1.18 8.07 -2.39 -0.02 1.16 16 27 H -0.01 -0.62 7.42 -2.39 -0.02 -0.64 16 28 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 29 H 0.17 2.02 7.40 -2.39 -0.02 2.00 16 30 H 0.13 2.63 7.99 -2.39 -0.02 2.61 16 31 H 0.18 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.12 2.57 8.14 -2.39 -0.02 2.55 16 33 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.08 1.71 7.86 -2.39 -0.02 1.69 16 35 H 0.10 1.65 8.00 -2.38 -0.02 1.63 16 Total: -1.00 -86.27 311.56 4.13 -82.15 By element: Atomic # 1 Polarization: 1.60 SS G_CDS: 1.10 Total: 2.70 kcal Atomic # 6 Polarization: 43.31 SS G_CDS: 7.83 Total: 51.13 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -6.66 Total: -116.80 kcal Atomic # 8 Polarization: -64.92 SS G_CDS: -0.17 Total: -65.08 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -86.27 4.13 -82.15 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599151390.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.640 kcal (2) G-P(sol) polarization free energy of solvation -86.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds