Wall clock time and date at job start Mon Mar 30 2020 01:04:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86802 * 119.99883 * 2 1 4 4 H 1.48503 * 109.46643 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46825 * 299.99625 * 3 2 1 6 6 H 1.48496 * 109.47546 * 59.99598 * 3 2 1 7 7 C 1.37875 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99548 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.53513 * 114.16530 * 179.97438 * 9 7 2 11 11 N 1.47478 * 87.92997 * 220.13764 * 10 9 7 12 12 C 1.46907 * 111.00198 * 138.70645 * 11 10 9 13 13 C 1.50694 * 109.47287 * 169.99853 * 12 11 10 14 14 C 1.39682 * 119.64242 * 94.97490 * 13 12 11 15 15 N 1.31345 * 120.70761 * 179.51455 * 14 13 12 16 16 C 1.33754 * 119.70408 * 0.74317 * 15 14 13 17 17 C 1.40588 * 121.10619 * 179.26565 * 16 15 14 18 18 C 1.36058 * 119.71994 * 180.02562 * 17 16 15 19 19 C 1.39412 * 120.96638 * 0.02562 * 18 17 16 20 20 C 1.36062 * 120.96967 * 359.97383 * 19 18 17 21 21 C 1.40587 * 119.71213 * 0.27856 * 20 19 18 22 22 N 1.31334 * 119.64586 * 275.00071 * 13 12 11 23 23 C 1.47474 * 87.83613 * 27.01139 * 11 10 9 24 24 H 0.96994 * 119.99611 * 0.02562 * 1 2 3 25 25 H 1.08993 * 113.25503 * 312.94561 * 9 7 2 26 26 H 1.08998 * 113.47622 * 105.37246 * 10 9 7 27 27 H 1.08994 * 113.53567 * 334.91320 * 10 9 7 28 28 H 1.08999 * 109.47205 * 49.99657 * 12 11 10 29 29 H 1.08998 * 109.46546 * 289.99767 * 12 11 10 30 30 H 1.07991 * 119.64759 * 0.04671 * 14 13 12 31 31 H 1.08004 * 120.13993 * 359.97438 * 17 16 15 32 32 H 1.08003 * 119.51909 * 180.02562 * 18 17 16 33 33 H 1.08004 * 119.51277 * 179.97438 * 19 18 17 34 34 H 1.08002 * 120.14042 * 179.97438 * 20 19 18 35 35 H 1.09002 * 113.47857 * 87.75819 * 23 11 10 36 36 H 1.09002 * 113.47673 * 218.22432 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3966 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.1497 -3.7437 0.0005 11 7 1.2050 -4.3601 -0.9495 12 6 1.9205 -5.0902 -2.0046 13 6 0.9383 -5.9038 -2.8072 14 6 0.4087 -5.3790 -3.9883 15 7 -0.4416 -6.0738 -4.7090 16 6 -0.8165 -7.2911 -4.3010 17 6 -1.7364 -8.0540 -5.0414 18 6 -2.0985 -9.2890 -4.5998 19 6 -1.5707 -9.8123 -3.4204 20 6 -0.6781 -9.1032 -2.6776 21 6 -0.2839 -7.8211 -3.0988 22 7 0.5890 -7.0986 -2.3883 23 6 0.8518 -2.9993 -1.3948 24 1 -0.4849 0.8400 -0.0004 25 1 0.4447 -2.5305 0.7332 26 1 2.1890 -4.2509 0.9645 27 1 3.1382 -3.5668 -0.4231 28 1 2.6574 -5.7535 -1.5518 29 1 2.4249 -4.3799 -2.6597 30 1 0.7081 -4.3948 -4.3170 31 1 -2.1546 -7.6611 -5.9564 32 1 -2.8052 -9.8724 -5.1714 33 1 -1.8748 -10.7950 -3.0915 34 1 -0.2780 -9.5214 -1.7657 35 1 1.4936 -2.6227 -2.1912 36 1 -0.2089 -2.8756 -1.6133 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600180639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:46 Heat of formation + Delta-G solvation = 104.226320 kcal Electronic energy + Delta-G solvation = -19198.917499 eV Core-core repulsion = 16263.190510 eV Total energy + Delta-G solvation = -2935.726990 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.38241 -39.04246 -37.49976 -34.81631 -32.92071 -31.75615 -30.65339 -28.99413 -26.28001 -25.06142 -24.59612 -23.74532 -22.27383 -21.69257 -18.78438 -18.45143 -18.16102 -16.77518 -16.33484 -15.31832 -15.13870 -14.74495 -14.64048 -14.37746 -14.04036 -13.96912 -13.74169 -12.95264 -12.15525 -12.01165 -11.88024 -11.86248 -11.71737 -11.55445 -11.51882 -11.22629 -11.01900 -10.65416 -10.36006 -9.88505 -9.35958 -9.02992 -8.98725 -8.83857 -8.62487 -8.46911 -8.08319 -6.08587 -4.13722 0.20506 0.55226 1.93300 2.73897 3.26072 3.34813 3.37827 3.91822 4.04969 4.14927 4.28289 4.37747 4.63570 4.73048 4.92428 5.04570 5.08513 5.15012 5.21561 5.35215 5.58827 5.71814 5.79092 5.84654 5.95602 6.04596 6.16833 6.24230 6.26778 6.38243 6.60980 6.63407 6.64180 7.07545 7.08038 7.34227 7.69074 7.81651 7.85994 7.98838 8.32669 8.90276 9.51908 11.00922 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039413 B = 0.003647 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.261642 B = 7676.546591 C = 7938.506038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.067 3.933 3 Si 0.891 3.109 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.059 0.941 9 C 0.043 3.957 10 C -0.002 4.002 11 N -0.476 5.476 12 C 0.066 3.934 13 C 0.135 3.865 14 C 0.092 3.908 15 N -0.428 5.428 16 C 0.068 3.932 17 C -0.081 4.081 18 C -0.107 4.107 19 C -0.105 4.105 20 C -0.081 4.081 21 C 0.083 3.917 22 N -0.415 5.415 23 C 0.000 4.000 24 H 0.262 0.738 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.087 0.913 29 H 0.066 0.934 30 H 0.173 0.827 31 H 0.137 0.863 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.058 0.942 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.153 -16.443 -8.844 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.136 4.136 3 Si 0.719 3.281 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.209 1.209 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.024 3.976 10 C -0.130 4.130 11 N -0.199 5.199 12 C -0.064 4.064 13 C -0.021 4.021 14 C -0.084 4.084 15 N -0.142 5.142 16 C -0.057 4.057 17 C -0.101 4.101 18 C -0.127 4.127 19 C -0.125 4.125 20 C -0.101 4.101 21 C -0.042 4.042 22 N -0.130 5.130 23 C -0.129 4.129 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.083 0.917 27 H 0.076 0.924 28 H 0.105 0.895 29 H 0.084 0.916 30 H 0.190 0.810 31 H 0.154 0.846 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.156 0.844 35 H 0.076 0.924 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.930 -17.013 -8.677 19.196 hybrid contribution 0.997 1.469 -0.454 1.832 sum -0.933 -15.544 -9.131 18.052 Atomic orbital electron populations 1.69982 1.06017 1.26710 1.49516 1.25031 0.94814 0.99223 0.94554 0.86557 0.80167 0.83728 0.77672 1.19681 1.20972 1.20922 1.21058 0.92804 0.90129 1.51504 0.92248 1.20080 0.94305 0.90834 0.92418 1.24031 0.95707 0.97435 0.95844 1.68929 1.27302 1.14158 1.09502 1.21596 0.93290 0.96797 0.94694 1.22515 0.95524 0.91225 0.92828 1.23970 0.92411 1.00155 0.91885 1.68701 1.09971 1.04792 1.30698 1.19632 0.98564 0.92752 0.94704 1.20782 0.95893 0.93761 0.99636 1.20947 0.99784 0.95481 0.96535 1.20960 0.96501 1.00251 0.94779 1.20824 0.97179 0.91847 1.00240 1.19676 0.95791 0.95946 0.92792 1.68560 1.09856 1.05852 1.28740 1.24229 1.00413 0.86523 1.01747 0.92871 0.91756 0.91689 0.92426 0.89493 0.91636 0.80958 0.84561 0.84982 0.84945 0.84405 0.92423 0.91789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.18 13.26 55.43 0.74 -24.45 16 2 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 3 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -13.66 8.83 -34.44 -0.30 -13.96 16 8 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 9 C 0.04 1.04 3.76 -91.24 -0.34 0.70 16 10 C 0.00 -0.03 7.25 -7.56 -0.05 -0.09 16 11 N -0.48 -9.45 6.32 -246.13 -1.55 -11.01 16 12 C 0.07 1.08 5.13 -4.98 -0.03 1.05 16 13 C 0.14 2.23 6.38 -82.27 -0.52 1.71 16 14 C 0.09 1.42 10.84 -17.22 -0.19 1.23 16 15 N -0.43 -6.81 10.47 -10.80 -0.11 -6.92 16 16 C 0.07 1.02 6.59 -84.80 -0.56 0.46 16 17 C -0.08 -0.94 9.98 -39.48 -0.39 -1.34 16 18 C -0.11 -0.98 9.95 -39.93 -0.40 -1.37 16 19 C -0.10 -0.97 9.95 -39.93 -0.40 -1.37 16 20 C -0.08 -0.98 9.99 -39.48 -0.39 -1.38 16 21 C 0.08 1.27 6.59 -84.80 -0.56 0.71 16 22 N -0.42 -7.08 10.38 -7.06 -0.07 -7.15 16 23 C 0.00 -0.01 7.28 -7.56 -0.06 -0.06 16 24 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 25 H 0.06 1.75 8.11 -51.93 -0.42 1.33 16 26 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 27 H 0.06 1.11 7.87 -51.93 -0.41 0.70 16 28 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 29 H 0.07 0.97 7.21 -51.93 -0.37 0.60 16 30 H 0.17 2.27 8.06 -52.49 -0.42 1.85 16 31 H 0.14 1.35 8.06 -52.48 -0.42 0.92 16 32 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 34 H 0.14 1.47 8.06 -52.49 -0.42 1.05 16 35 H 0.06 1.22 7.38 -51.93 -0.38 0.83 16 36 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 LS Contribution 310.59 15.07 4.68 4.68 Total: -1.00 -30.43 310.59 -10.15 -40.58 By element: Atomic # 1 Polarization: 5.16 SS G_CDS: -4.51 Total: 0.65 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -4.29 Total: -11.99 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: -1.01 Total: -49.53 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.43 -10.15 -40.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600180639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.809 kcal (2) G-P(sol) polarization free energy of solvation -30.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.582 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds