Wall clock time and date at job start Mon Mar 30 2020 01:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86802 * 119.99883 * 2 1 4 4 H 1.48503 * 109.46643 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46825 * 299.99625 * 3 2 1 6 6 H 1.48496 * 109.47546 * 59.99598 * 3 2 1 7 7 C 1.37875 * 119.99816 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99548 * 180.02562 * 7 2 1 9 9 C 1.50702 * 119.99897 * 0.02562 * 7 2 1 10 10 C 1.53513 * 114.16530 * 179.97438 * 9 7 2 11 11 N 1.47478 * 87.92997 * 220.13764 * 10 9 7 12 12 C 1.46907 * 111.00198 * 138.70645 * 11 10 9 13 13 C 1.50694 * 109.47287 * 169.99853 * 12 11 10 14 14 C 1.39682 * 119.64242 * 94.97490 * 13 12 11 15 15 N 1.31345 * 120.70761 * 179.51455 * 14 13 12 16 16 C 1.33754 * 119.70408 * 0.74317 * 15 14 13 17 17 C 1.40588 * 121.10619 * 179.26565 * 16 15 14 18 18 C 1.36058 * 119.71994 * 180.02562 * 17 16 15 19 19 C 1.39412 * 120.96638 * 0.02562 * 18 17 16 20 20 C 1.36062 * 120.96967 * 359.97383 * 19 18 17 21 21 C 1.40587 * 119.71213 * 0.27856 * 20 19 18 22 22 N 1.31334 * 119.64586 * 275.00071 * 13 12 11 23 23 C 1.47474 * 87.83613 * 27.01139 * 11 10 9 24 24 H 0.96994 * 119.99611 * 0.02562 * 1 2 3 25 25 H 1.08993 * 113.25503 * 312.94561 * 9 7 2 26 26 H 1.08998 * 113.47622 * 105.37246 * 10 9 7 27 27 H 1.08994 * 113.53567 * 334.91320 * 10 9 7 28 28 H 1.08999 * 109.47205 * 49.99657 * 12 11 10 29 29 H 1.08998 * 109.46546 * 289.99767 * 12 11 10 30 30 H 1.07991 * 119.64759 * 0.04671 * 14 13 12 31 31 H 1.08004 * 120.13993 * 359.97438 * 17 16 15 32 32 H 1.08003 * 119.51909 * 180.02562 * 18 17 16 33 33 H 1.08004 * 119.51277 * 179.97438 * 19 18 17 34 34 H 1.08002 * 120.14042 * 179.97438 * 20 19 18 35 35 H 1.09002 * 113.47857 * 87.75819 * 23 11 10 36 36 H 1.09002 * 113.47673 * 218.22432 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3966 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 6 2.1497 -3.7437 0.0005 11 7 1.2050 -4.3601 -0.9495 12 6 1.9205 -5.0902 -2.0046 13 6 0.9383 -5.9038 -2.8072 14 6 0.4087 -5.3790 -3.9883 15 7 -0.4416 -6.0738 -4.7090 16 6 -0.8165 -7.2911 -4.3010 17 6 -1.7364 -8.0540 -5.0414 18 6 -2.0985 -9.2890 -4.5998 19 6 -1.5707 -9.8123 -3.4204 20 6 -0.6781 -9.1032 -2.6776 21 6 -0.2839 -7.8211 -3.0988 22 7 0.5890 -7.0986 -2.3883 23 6 0.8518 -2.9993 -1.3948 24 1 -0.4849 0.8400 -0.0004 25 1 0.4447 -2.5305 0.7332 26 1 2.1890 -4.2509 0.9645 27 1 3.1382 -3.5668 -0.4231 28 1 2.6574 -5.7535 -1.5518 29 1 2.4249 -4.3799 -2.6597 30 1 0.7081 -4.3948 -4.3170 31 1 -2.1546 -7.6611 -5.9564 32 1 -2.8052 -9.8724 -5.1714 33 1 -1.8748 -10.7950 -3.0915 34 1 -0.2780 -9.5214 -1.7657 35 1 1.4936 -2.6227 -2.1912 36 1 -0.2089 -2.8756 -1.6133 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600180639.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:04:45 Heat of formation + Delta-G solvation = 82.954097 kcal Electronic energy + Delta-G solvation = -19199.839932 eV Core-core repulsion = 16263.190510 eV Total energy + Delta-G solvation = -2936.649422 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -42.45536 -40.66149 -38.48211 -35.94522 -34.79100 -33.10542 -31.57090 -30.41528 -27.89549 -26.64361 -25.93009 -25.14464 -23.22760 -23.09715 -20.50234 -19.52492 -19.22614 -18.62965 -17.47211 -16.82734 -16.42529 -16.19162 -15.88080 -15.59813 -15.45579 -15.33071 -14.78845 -14.30633 -13.92155 -13.45422 -13.14261 -12.92304 -12.87762 -12.75552 -12.72768 -12.68972 -12.63507 -12.35349 -12.09638 -11.69726 -11.16563 -10.88679 -10.50499 -10.16968 -9.90665 -9.69629 -9.55623 -8.13760 -6.25358 -0.79510 -0.48612 0.90517 1.43737 1.46037 1.57400 1.80086 2.44128 2.84256 3.00112 3.11473 3.16275 3.23156 3.40473 3.74709 3.80439 4.03324 4.10176 4.22933 4.26127 4.38009 4.43995 4.48453 4.56184 4.73264 4.83998 4.89305 4.93784 4.96501 5.17926 5.22122 5.23363 5.35924 5.44591 5.64550 5.76701 5.85310 6.21943 6.28822 6.35190 6.69499 6.85287 7.43820 8.96269 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039413 B = 0.003647 C = 0.003526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 710.261642 B = 7676.546591 C = 7938.506038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.013 3.987 3 Si 0.959 3.041 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.283 1.283 7 C -0.526 4.526 8 H 0.065 0.935 9 C 0.021 3.979 10 C 0.015 3.985 11 N -0.483 5.483 12 C 0.071 3.929 13 C 0.115 3.885 14 C 0.077 3.923 15 N -0.443 5.443 16 C 0.046 3.954 17 C -0.100 4.100 18 C -0.086 4.086 19 C -0.083 4.083 20 C -0.103 4.103 21 C 0.056 3.944 22 N -0.436 5.436 23 C 0.016 3.984 24 H 0.262 0.738 25 H 0.025 0.975 26 H 0.072 0.928 27 H 0.075 0.925 28 H 0.097 0.903 29 H 0.083 0.917 30 H 0.186 0.814 31 H 0.150 0.850 32 H 0.177 0.823 33 H 0.176 0.824 34 H 0.146 0.854 35 H 0.067 0.933 36 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.015 -18.419 -9.971 20.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.563 5.563 2 C -0.186 4.186 3 Si 0.784 3.216 4 H -0.185 1.185 5 H -0.207 1.207 6 H -0.209 1.209 7 C -0.564 4.564 8 H 0.083 0.917 9 C 0.002 3.998 10 C -0.114 4.114 11 N -0.206 5.206 12 C -0.058 4.058 13 C -0.040 4.040 14 C -0.098 4.098 15 N -0.156 5.156 16 C -0.078 4.078 17 C -0.119 4.119 18 C -0.105 4.105 19 C -0.103 4.103 20 C -0.122 4.122 21 C -0.069 4.069 22 N -0.151 5.151 23 C -0.113 4.113 24 H 0.070 0.930 25 H 0.043 0.957 26 H 0.090 0.910 27 H 0.093 0.907 28 H 0.115 0.885 29 H 0.101 0.899 30 H 0.203 0.797 31 H 0.168 0.832 32 H 0.194 0.806 33 H 0.193 0.807 34 H 0.164 0.836 35 H 0.085 0.915 36 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.768 -18.995 -9.804 21.449 hybrid contribution 0.827 1.842 -0.133 2.024 sum -0.942 -17.153 -9.938 19.846 Atomic orbital electron populations 1.70120 1.07668 1.27478 1.51037 1.25853 0.95542 1.02807 0.94374 0.85495 0.79303 0.79328 0.77460 1.18470 1.20693 1.20947 1.21405 0.93188 0.91087 1.50714 0.91686 1.20017 0.94483 0.92279 0.93041 1.23857 0.95706 0.95154 0.96640 1.68822 1.28129 1.13034 1.10598 1.21579 0.93276 0.96893 0.94044 1.22464 0.96470 0.91588 0.93517 1.24138 0.92838 1.00815 0.91959 1.68701 1.10270 1.05574 1.31092 1.20136 0.99508 0.92880 0.95324 1.21096 0.95805 0.94749 1.00250 1.21503 0.98662 0.94325 0.96034 1.21501 0.93926 1.01238 0.93638 1.21091 0.98625 0.91074 1.01444 1.20153 0.96183 0.97257 0.93292 1.68493 1.10704 1.06317 1.29626 1.23945 0.99039 0.87899 1.00434 0.92953 0.95717 0.90963 0.90699 0.88474 0.89888 0.79663 0.83212 0.80579 0.80697 0.83645 0.91459 0.94270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.11 13.26 21.45 0.28 -53.83 16 2 C 0.01 0.73 5.46 84.65 0.46 1.19 16 3 Si 0.96 42.56 29.54 68.60 2.03 44.59 16 4 H -0.26 -10.98 7.11 99.48 0.71 -10.28 16 5 H -0.28 -12.27 7.11 99.48 0.71 -11.57 16 6 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 7 C -0.53 -28.05 8.83 25.60 0.23 -27.82 16 8 H 0.06 3.32 7.81 -2.91 -0.02 3.30 16 9 C 0.02 1.06 3.76 -11.20 -0.04 1.01 16 10 C 0.01 0.60 7.25 83.57 0.61 1.20 16 11 N -0.48 -19.37 6.32 -932.62 -5.89 -25.26 16 12 C 0.07 2.32 5.13 85.55 0.44 2.76 16 13 C 0.12 3.86 6.38 42.98 0.27 4.14 16 14 C 0.08 2.46 10.84 85.11 0.92 3.38 16 15 N -0.44 -14.28 10.47 -188.08 -1.97 -16.25 16 16 C 0.05 1.37 6.59 40.30 0.27 1.63 16 17 C -0.10 -2.11 9.98 22.34 0.22 -1.88 16 18 C -0.09 -1.19 9.95 22.05 0.22 -0.98 16 19 C -0.08 -1.20 9.95 22.05 0.22 -0.99 16 20 C -0.10 -2.30 9.99 22.34 0.22 -2.08 16 21 C 0.06 1.71 6.59 40.30 0.27 1.97 16 22 N -0.44 -15.06 10.38 -176.24 -1.83 -16.89 16 23 C 0.02 0.72 7.28 83.57 0.61 1.33 16 24 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 25 H 0.02 1.42 8.11 -2.39 -0.02 1.40 16 26 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.07 2.77 7.87 -2.39 -0.02 2.75 16 28 H 0.10 2.93 8.08 -2.39 -0.02 2.91 16 29 H 0.08 2.39 7.21 -2.39 -0.02 2.37 16 30 H 0.19 5.03 8.06 -2.92 -0.02 5.01 16 31 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 32 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16 33 H 0.18 1.08 8.06 -2.91 -0.02 1.05 16 34 H 0.15 2.91 8.06 -2.91 -0.02 2.89 16 35 H 0.07 2.86 7.38 -2.39 -0.02 2.84 16 36 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 Total: -1.00 -68.48 310.59 -1.39 -69.86 By element: Atomic # 1 Polarization: 11.81 SS G_CDS: 1.08 Total: 12.89 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: 4.91 Total: -15.12 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -9.40 Total: -112.22 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 2.03 Total: 44.59 kcal Total: -68.48 -1.39 -69.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600180639.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.818 kcal (2) G-P(sol) polarization free energy of solvation -68.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.864 kcal (6) G-S(sol) free energy of system = (1) + (5) 82.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds