Wall clock time and date at job start Mon Mar 30 2020 01:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31245 * 1 3 3 Si 1.86800 * 119.99993 * 2 1 4 4 H 1.48504 * 109.46701 * 269.99444 * 3 2 1 5 5 H 1.48493 * 109.47193 * 29.99579 * 3 2 1 6 6 H 1.48498 * 109.47226 * 149.99796 * 3 2 1 7 7 C 1.39025 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00205 * 180.02562 * 7 2 1 9 9 N 1.37502 * 119.99611 * 0.02562 * 7 2 1 10 10 C 1.36501 * 126.76344 * 180.26593 * 9 7 2 11 11 C 1.36093 * 106.63467 * 180.13727 * 10 9 7 12 12 C 1.48397 * 125.66341 * 179.88196 * 11 10 9 13 13 C 1.39367 * 120.11952 * 359.68359 * 12 11 10 14 14 C 1.37998 * 119.87314 * 180.02562 * 13 12 11 15 15 C 1.38344 * 120.12167 * 359.72714 * 14 13 12 16 16 C 1.38308 * 120.24703 * 0.55018 * 15 14 13 17 17 C 1.50697 * 119.93971 * 179.72687 * 16 15 14 18 18 C 1.53786 * 113.61519 * 320.58748 * 17 16 15 19 19 C 1.54049 * 86.98426 * 140.01979 * 18 17 16 20 20 C 1.53781 * 113.61630 * 58.19697 * 17 16 15 21 21 C 1.38033 * 120.11659 * 359.45126 * 16 15 14 22 22 N 1.34222 * 108.67425 * 359.60848 * 11 10 9 23 23 N 1.28724 * 109.88755 * 0.24437 * 22 11 10 24 24 H 0.97001 * 120.00003 * 0.02562 * 1 2 3 25 25 H 1.08002 * 126.67836 * 0.02562 * 10 9 7 26 26 H 1.07997 * 120.06168 * 0.02562 * 13 12 11 27 27 H 1.08000 * 119.93433 * 180.02562 * 14 13 12 28 28 H 1.08009 * 119.87700 * 180.27649 * 15 14 13 29 29 H 1.09002 * 112.84782 * 189.39338 * 17 16 15 30 30 H 1.08992 * 113.61675 * 254.61723 * 18 17 16 31 31 H 1.09000 * 113.60973 * 25.52011 * 18 17 16 32 32 H 1.09005 * 113.62125 * 220.02158 * 19 18 17 33 33 H 1.08996 * 113.68970 * 89.12734 * 19 18 17 34 34 H 1.08999 * 113.61567 * 334.48200 * 20 17 16 35 35 H 1.08998 * 113.61196 * 105.38554 * 20 17 16 36 36 H 1.08005 * 120.05934 * 180.29451 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2464 1.6177 0.0000 4 1 2.4940 2.0463 -1.4001 5 1 1.4439 2.6527 0.6999 6 1 3.5440 1.4402 0.7001 7 6 2.0076 -1.2040 0.0005 8 1 3.0876 -1.2040 0.0010 9 7 1.3201 -2.3947 0.0005 10 6 1.8586 -3.6490 0.0061 11 6 0.8141 -4.5215 0.0006 12 6 0.9229 -6.0014 0.0012 13 6 2.1765 -6.6105 0.0012 14 6 2.2718 -7.9872 0.0012 15 6 1.1260 -8.7624 0.0069 16 6 -0.1206 -8.1633 0.0012 17 6 -1.3641 -9.0145 0.0013 18 6 -1.2552 -10.2644 -0.8880 19 6 -2.0067 -11.0211 0.2236 20 6 -1.4563 -9.9704 1.2024 21 6 -0.2276 -6.7871 0.0012 22 7 -0.3309 -3.8211 0.0006 23 7 -0.0728 -2.5600 0.0006 24 1 -0.4850 0.8401 -0.0004 25 1 2.9090 -3.9001 0.0118 26 1 3.0715 -6.0062 0.0011 27 1 3.2427 -8.4602 0.0016 28 1 1.2052 -9.8396 0.0115 29 1 -2.2727 -8.4364 -0.1674 30 1 -1.8144 -10.1870 -1.8204 31 1 -0.2312 -10.6080 -1.0347 32 1 -1.6253 -12.0265 0.4023 33 1 -3.0910 -10.9926 0.1169 34 1 -0.4872 -10.2338 1.6262 35 1 -2.1778 -9.6558 1.9564 36 1 -1.2016 -6.3203 0.0015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000600972390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:55 Heat of formation + Delta-G solvation = 122.289772 kcal Electronic energy + Delta-G solvation = -19058.919073 eV Core-core repulsion = 16123.975374 eV Total energy + Delta-G solvation = -2934.943699 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.24667 -39.55773 -37.38274 -34.23535 -31.68601 -31.31277 -30.69556 -27.77729 -25.76849 -25.56769 -25.21217 -22.50836 -21.86190 -20.71728 -19.92057 -18.84394 -17.71732 -16.39955 -15.67141 -15.44245 -14.98104 -14.55435 -14.22208 -14.00425 -13.65918 -13.06886 -12.94760 -12.91204 -12.44718 -12.32604 -11.96912 -11.76398 -11.57443 -11.42367 -11.28481 -10.90743 -10.66394 -10.43669 -10.36490 -10.14556 -10.12663 -9.67795 -9.35115 -8.90901 -8.65756 -8.24988 -7.07317 -6.91067 -4.70520 1.69730 1.88214 2.78304 2.90885 2.97539 3.27081 3.62245 3.83437 4.50479 4.59436 4.65143 4.72485 4.73157 4.77364 5.10736 5.25585 5.36854 5.40551 5.57585 5.66363 5.75212 5.77704 5.85899 5.91926 5.97129 6.02355 6.19891 6.21639 6.37776 6.43808 6.51672 6.66867 6.74844 6.88418 6.93804 7.05314 7.33270 7.49699 7.68257 7.81435 8.40685 8.99866 10.04190 10.07788 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.045937 B = 0.003583 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.380774 B = 7812.807114 C = 8287.533734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.756 5.756 2 C 0.046 3.954 3 Si 0.945 3.055 4 H -0.266 1.266 5 H -0.272 1.272 6 H -0.260 1.260 7 C -0.312 4.312 8 H 0.123 0.877 9 N -0.145 5.145 10 C -0.103 4.103 11 C -0.051 4.051 12 C 0.045 3.955 13 C -0.130 4.130 14 C -0.116 4.116 15 C -0.142 4.142 16 C -0.072 4.072 17 C -0.070 4.070 18 C -0.134 4.134 19 C -0.144 4.144 20 C -0.131 4.131 21 C -0.108 4.108 22 N -0.309 5.309 23 N -0.087 5.087 24 H 0.284 0.716 25 H 0.159 0.841 26 H 0.118 0.882 27 H 0.115 0.885 28 H 0.112 0.888 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.084 0.916 32 H 0.064 0.936 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.403 -13.605 0.170 13.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.382 5.382 2 C -0.174 4.174 3 Si 0.767 3.233 4 H -0.191 1.191 5 H -0.197 1.197 6 H -0.184 1.184 7 C -0.449 4.449 8 H 0.141 0.859 9 N 0.086 4.914 10 C -0.258 4.258 11 C -0.195 4.195 12 C 0.043 3.957 13 C -0.149 4.149 14 C -0.134 4.134 15 C -0.161 4.161 16 C -0.072 4.072 17 C -0.089 4.089 18 C -0.171 4.171 19 C -0.181 4.181 20 C -0.169 4.169 21 C -0.128 4.128 22 N -0.170 5.170 23 N -0.064 5.064 24 H 0.095 0.905 25 H 0.177 0.823 26 H 0.136 0.864 27 H 0.133 0.867 28 H 0.130 0.870 29 H 0.113 0.887 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.085 0.915 36 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 0.699 -12.693 0.173 12.713 hybrid contribution 1.567 0.479 -0.006 1.638 sum 2.266 -12.214 0.166 12.424 Atomic orbital electron populations 1.70134 1.06492 1.29357 1.32215 1.25830 0.95843 1.00981 0.94742 0.85656 0.79447 0.78814 0.79370 1.19139 1.19675 1.18386 1.20216 0.92354 0.80473 1.51836 0.85903 1.46620 1.06908 1.04634 1.33212 1.22478 0.98903 0.84909 1.19523 1.19395 0.89675 0.92262 1.18194 1.17963 0.92736 0.89674 0.95348 1.21048 0.96787 0.94376 1.02734 1.20874 0.97832 0.93592 1.01065 1.20756 0.92032 0.98913 1.04379 1.19546 0.94022 0.93352 1.00247 1.21488 0.96313 0.94035 0.97022 1.23074 1.00947 0.95876 0.97232 1.22885 1.00054 0.98036 0.97154 1.22976 1.01497 0.96091 0.96301 1.21078 0.98749 0.92206 1.00720 1.74228 1.25027 1.00592 1.17110 1.82524 0.88797 1.06820 1.28213 0.90482 0.82327 0.86364 0.86710 0.87001 0.88672 0.91548 0.89788 0.91704 0.90340 0.89940 0.91507 0.85722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.76 -20.21 11.87 55.50 0.66 -19.55 16 2 C 0.05 1.14 5.50 -17.51 -0.10 1.04 16 3 Si 0.94 17.78 29.55 -169.99 -5.02 12.76 16 4 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 5 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 6 H -0.26 -4.67 7.11 56.52 0.40 -4.27 16 7 C -0.31 -7.95 10.30 -14.72 -0.15 -8.10 16 8 H 0.12 2.75 7.83 -52.49 -0.41 2.33 16 9 N -0.15 -3.97 3.77 -11.26 -0.04 -4.01 16 10 C -0.10 -2.48 10.92 -16.24 -0.18 -2.65 16 11 C -0.05 -1.24 6.90 -83.41 -0.58 -1.82 16 12 C 0.05 0.92 5.88 -104.89 -0.62 0.31 16 13 C -0.13 -2.21 9.55 -39.25 -0.37 -2.59 16 14 C -0.12 -1.67 10.03 -39.63 -0.40 -2.07 16 15 C -0.14 -2.00 8.52 -39.52 -0.34 -2.33 16 16 C -0.07 -1.10 5.29 -104.67 -0.55 -1.66 16 17 C -0.07 -0.89 3.97 -90.96 -0.36 -1.25 16 18 C -0.13 -1.41 7.48 -25.77 -0.19 -1.60 16 19 C -0.14 -1.33 8.09 -25.78 -0.21 -1.54 16 20 C -0.13 -1.42 7.54 -25.92 -0.20 -1.62 16 21 C -0.11 -2.03 9.35 -39.25 -0.37 -2.40 16 22 N -0.31 -8.52 11.98 32.93 0.39 -8.13 16 23 N -0.09 -2.57 11.69 60.35 0.71 -1.86 16 24 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 25 H 0.16 3.17 7.25 -52.49 -0.38 2.79 16 26 H 0.12 1.85 6.97 -52.49 -0.37 1.48 16 27 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 28 H 0.11 1.29 6.71 -52.48 -0.35 0.94 16 29 H 0.10 1.22 8.08 -51.93 -0.42 0.80 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.86 6.40 -51.93 -0.33 0.52 16 32 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.89 7.61 -51.93 -0.40 0.49 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.12 2.46 7.83 -52.48 -0.41 2.05 16 LS Contribution 307.12 15.07 4.63 4.63 Total: -1.00 -30.61 307.12 -7.60 -38.21 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.32 Total: 6.24 kcal Atomic # 6 Polarization: -23.68 SS G_CDS: -4.60 Total: -28.29 kcal Atomic # 7 Polarization: -35.26 SS G_CDS: 1.72 Total: -33.55 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.02 Total: 12.76 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -30.61 -7.60 -38.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600972390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.499 kcal (2) G-P(sol) polarization free energy of solvation -30.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.599 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.209 kcal (6) G-S(sol) free energy of system = (1) + (5) 122.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds