Wall clock time and date at job start Mon Mar 30 2020 01:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31245 * 1 3 3 Si 1.86800 * 119.99993 * 2 1 4 4 H 1.48504 * 109.46701 * 269.99444 * 3 2 1 5 5 H 1.48493 * 109.47193 * 29.99579 * 3 2 1 6 6 H 1.48498 * 109.47226 * 149.99796 * 3 2 1 7 7 C 1.39025 * 120.00232 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00205 * 180.02562 * 7 2 1 9 9 N 1.37502 * 119.99611 * 0.02562 * 7 2 1 10 10 C 1.36501 * 126.76344 * 180.26593 * 9 7 2 11 11 C 1.36093 * 106.63467 * 180.13727 * 10 9 7 12 12 C 1.48397 * 125.66341 * 179.88196 * 11 10 9 13 13 C 1.39367 * 120.11952 * 359.68359 * 12 11 10 14 14 C 1.37998 * 119.87314 * 180.02562 * 13 12 11 15 15 C 1.38344 * 120.12167 * 359.72714 * 14 13 12 16 16 C 1.38308 * 120.24703 * 0.55018 * 15 14 13 17 17 C 1.50697 * 119.93971 * 179.72687 * 16 15 14 18 18 C 1.53786 * 113.61519 * 320.58748 * 17 16 15 19 19 C 1.54049 * 86.98426 * 140.01979 * 18 17 16 20 20 C 1.53781 * 113.61630 * 58.19697 * 17 16 15 21 21 C 1.38033 * 120.11659 * 359.45126 * 16 15 14 22 22 N 1.34222 * 108.67425 * 359.60848 * 11 10 9 23 23 N 1.28724 * 109.88755 * 0.24437 * 22 11 10 24 24 H 0.97001 * 120.00003 * 0.02562 * 1 2 3 25 25 H 1.08002 * 126.67836 * 0.02562 * 10 9 7 26 26 H 1.07997 * 120.06168 * 0.02562 * 13 12 11 27 27 H 1.08000 * 119.93433 * 180.02562 * 14 13 12 28 28 H 1.08009 * 119.87700 * 180.27649 * 15 14 13 29 29 H 1.09002 * 112.84782 * 189.39338 * 17 16 15 30 30 H 1.08992 * 113.61675 * 254.61723 * 18 17 16 31 31 H 1.09000 * 113.60973 * 25.52011 * 18 17 16 32 32 H 1.09005 * 113.62125 * 220.02158 * 19 18 17 33 33 H 1.08996 * 113.68970 * 89.12734 * 19 18 17 34 34 H 1.08999 * 113.61567 * 334.48200 * 20 17 16 35 35 H 1.08998 * 113.61196 * 105.38554 * 20 17 16 36 36 H 1.08005 * 120.05934 * 180.29451 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3124 0.0000 0.0000 3 14 2.2464 1.6177 0.0000 4 1 2.4940 2.0463 -1.4001 5 1 1.4439 2.6527 0.6999 6 1 3.5440 1.4402 0.7001 7 6 2.0076 -1.2040 0.0005 8 1 3.0876 -1.2040 0.0010 9 7 1.3201 -2.3947 0.0005 10 6 1.8586 -3.6490 0.0061 11 6 0.8141 -4.5215 0.0006 12 6 0.9229 -6.0014 0.0012 13 6 2.1765 -6.6105 0.0012 14 6 2.2718 -7.9872 0.0012 15 6 1.1260 -8.7624 0.0069 16 6 -0.1206 -8.1633 0.0012 17 6 -1.3641 -9.0145 0.0013 18 6 -1.2552 -10.2644 -0.8880 19 6 -2.0067 -11.0211 0.2236 20 6 -1.4563 -9.9704 1.2024 21 6 -0.2276 -6.7871 0.0012 22 7 -0.3309 -3.8211 0.0006 23 7 -0.0728 -2.5600 0.0006 24 1 -0.4850 0.8401 -0.0004 25 1 2.9090 -3.9001 0.0118 26 1 3.0715 -6.0062 0.0011 27 1 3.2427 -8.4602 0.0016 28 1 1.2052 -9.8396 0.0115 29 1 -2.2727 -8.4364 -0.1674 30 1 -1.8144 -10.1870 -1.8204 31 1 -0.2312 -10.6080 -1.0347 32 1 -1.6253 -12.0265 0.4023 33 1 -3.0910 -10.9926 0.1169 34 1 -0.4872 -10.2338 1.6262 35 1 -2.1778 -9.6558 1.9564 36 1 -1.2016 -6.3203 0.0015 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000600972390.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:06:55 Heat of formation + Delta-G solvation = 105.208296 kcal Electronic energy + Delta-G solvation = -19059.659782 eV Core-core repulsion = 16123.975374 eV Total energy + Delta-G solvation = -2935.684408 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.122 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.11538 -40.69999 -38.51832 -36.11736 -33.50552 -32.90107 -31.98202 -29.47949 -27.63356 -26.41549 -26.27596 -24.01757 -23.46637 -22.32124 -21.37912 -20.16634 -19.27030 -17.76310 -17.42803 -16.51519 -16.24901 -15.96984 -15.96008 -15.48150 -15.08033 -14.64781 -14.32956 -14.08401 -13.74602 -13.44766 -13.31786 -13.24883 -13.14047 -12.74779 -12.47894 -12.13330 -12.08807 -11.89266 -11.65433 -11.44267 -11.27041 -11.23154 -10.97201 -10.75002 -10.30638 -9.51131 -8.78468 -8.75710 -6.69001 0.31588 0.59229 1.07171 1.35765 1.56672 1.62124 2.03021 2.18110 2.66836 2.86241 3.14452 3.72447 3.77354 3.92105 3.92498 4.14959 4.19570 4.23223 4.32504 4.49917 4.56558 4.63650 4.73580 4.85527 4.86648 4.93094 4.99243 5.03066 5.14127 5.15353 5.19344 5.27973 5.37293 5.54752 5.61323 5.75624 5.86526 5.93648 5.95954 6.23614 6.52527 7.08909 8.08650 8.25159 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.045937 B = 0.003583 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 609.380774 B = 7812.807114 C = 8287.533734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.807 5.807 2 C -0.003 4.003 3 Si 1.032 2.968 4 H -0.259 1.259 5 H -0.271 1.271 6 H -0.239 1.239 7 C -0.339 4.339 8 H 0.152 0.848 9 N -0.159 5.159 10 C -0.115 4.115 11 C -0.045 4.045 12 C 0.004 3.996 13 C -0.130 4.130 14 C -0.106 4.106 15 C -0.126 4.126 16 C -0.069 4.069 17 C -0.086 4.086 18 C -0.129 4.129 19 C -0.131 4.131 20 C -0.130 4.130 21 C -0.130 4.130 22 N -0.349 5.349 23 N -0.149 5.149 24 H 0.289 0.711 25 H 0.198 0.802 26 H 0.132 0.868 27 H 0.157 0.843 28 H 0.151 0.849 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.063 0.937 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.240 -15.916 0.205 16.757 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.434 5.434 2 C -0.218 4.218 3 Si 0.848 3.152 4 H -0.183 1.183 5 H -0.196 1.196 6 H -0.162 1.162 7 C -0.476 4.476 8 H 0.169 0.831 9 N 0.071 4.929 10 C -0.269 4.269 11 C -0.191 4.191 12 C 0.002 3.998 13 C -0.150 4.150 14 C -0.123 4.123 15 C -0.145 4.145 16 C -0.070 4.070 17 C -0.104 4.104 18 C -0.166 4.166 19 C -0.169 4.169 20 C -0.167 4.167 21 C -0.149 4.149 22 N -0.207 5.207 23 N -0.124 5.124 24 H 0.100 0.900 25 H 0.215 0.785 26 H 0.150 0.850 27 H 0.175 0.825 28 H 0.168 0.832 29 H 0.099 0.901 30 H 0.086 0.914 31 H 0.114 0.886 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.108 0.892 35 H 0.081 0.919 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.509 -15.055 0.208 15.460 hybrid contribution 0.704 0.989 -0.019 1.214 sum 4.213 -14.067 0.190 14.685 Atomic orbital electron populations 1.70301 1.08930 1.30806 1.33343 1.27207 0.96553 1.05056 0.93006 0.84417 0.78351 0.72646 0.79757 1.18314 1.19572 1.16200 1.21118 0.93878 0.80610 1.51946 0.83074 1.46971 1.06671 1.06112 1.33180 1.23163 1.00601 0.83936 1.19185 1.20193 0.88869 0.94560 1.15521 1.18085 0.94875 0.87656 0.99233 1.21266 0.95633 0.95985 1.02107 1.21338 0.99914 0.92309 0.98771 1.21225 0.90960 1.00859 1.01430 1.19845 0.96209 0.91989 0.98908 1.21630 0.94597 0.94585 0.99631 1.23094 1.01916 0.94256 0.97316 1.22837 1.00300 0.98390 0.95325 1.23002 1.02015 0.95884 0.95807 1.21030 0.97299 0.94017 1.02596 1.74169 1.26728 1.00679 1.19155 1.82440 0.90466 1.07739 1.31788 0.90032 0.78490 0.85020 0.82491 0.83187 0.90136 0.91440 0.88627 0.89698 0.89893 0.89204 0.91853 0.88597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -45.05 11.87 21.67 0.26 -44.79 16 2 C 0.00 -0.15 5.50 84.97 0.47 0.32 16 3 Si 1.03 36.01 29.55 68.60 2.03 38.03 16 4 H -0.26 -8.65 7.11 99.48 0.71 -7.95 16 5 H -0.27 -9.31 7.11 99.48 0.71 -8.60 16 6 H -0.24 -7.49 7.11 99.48 0.71 -6.78 16 7 C -0.34 -17.53 10.30 83.99 0.87 -16.66 16 8 H 0.15 6.61 7.83 -2.91 -0.02 6.59 16 9 N -0.16 -9.06 3.77 -189.54 -0.71 -9.77 16 10 C -0.11 -5.67 10.92 83.47 0.91 -4.75 16 11 C -0.05 -2.31 6.90 40.99 0.28 -2.03 16 12 C 0.00 0.16 5.88 -20.04 -0.12 0.04 16 13 C -0.13 -4.22 9.55 22.48 0.21 -4.00 16 14 C -0.11 -2.63 10.03 22.24 0.22 -2.40 16 15 C -0.13 -3.07 8.52 22.31 0.19 -2.88 16 16 C -0.07 -2.07 5.29 -19.90 -0.11 -2.18 16 17 C -0.09 -2.09 3.97 -11.01 -0.04 -2.13 16 18 C -0.13 -2.34 7.48 31.21 0.23 -2.10 16 19 C -0.13 -2.01 8.09 31.21 0.25 -1.76 16 20 C -0.13 -2.52 7.54 31.12 0.23 -2.28 16 21 C -0.13 -5.09 9.35 22.48 0.21 -4.88 16 22 N -0.35 -20.69 11.98 -49.73 -0.60 -21.29 16 23 N -0.15 -9.37 11.69 37.02 0.43 -8.94 16 24 H 0.29 14.57 8.31 -92.71 -0.77 13.80 16 25 H 0.20 7.71 7.25 -2.91 -0.02 7.69 16 26 H 0.13 3.80 6.97 -2.91 -0.02 3.78 16 27 H 0.16 2.66 8.06 -2.91 -0.02 2.63 16 28 H 0.15 2.57 6.71 -2.91 -0.02 2.55 16 29 H 0.08 2.15 8.08 -2.39 -0.02 2.13 16 30 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 31 H 0.10 1.52 6.40 -2.39 -0.02 1.50 16 32 H 0.08 1.01 8.14 -2.38 -0.02 1.00 16 33 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 34 H 0.09 1.62 7.61 -2.39 -0.02 1.60 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.10 4.19 7.83 -2.91 -0.02 4.17 16 Total: -1.00 -73.04 307.12 6.32 -66.72 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: 1.09 Total: 27.74 kcal Atomic # 6 Polarization: -51.53 SS G_CDS: 3.82 Total: -47.71 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -0.62 Total: -84.79 kcal Atomic # 14 Polarization: 36.01 SS G_CDS: 2.03 Total: 38.03 kcal Total: -73.04 6.32 -66.72 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000600972390.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.932 kcal (2) G-P(sol) polarization free energy of solvation -73.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.317 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 105.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds