Wall clock time and date at job start Mon Mar 30 2020 00:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 114.00019 * 2 1 4 4 C 1.52996 * 109.46974 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46944 * 60.18762 * 4 3 2 6 6 C 1.36908 * 120.00036 * 184.32767 * 5 4 3 7 7 H 1.08003 * 120.00103 * 22.27669 * 6 5 4 8 8 C 1.38977 * 120.00118 * 202.27546 * 6 5 4 9 9 N 1.31414 * 119.99926 * 15.69900 * 8 6 5 10 10 Si 1.86800 * 120.00044 * 195.69390 * 8 6 5 11 11 H 1.48495 * 109.47293 * 95.00120 * 10 8 6 12 12 H 1.48497 * 109.47141 * 215.00064 * 10 8 6 13 13 H 1.48500 * 109.47029 * 335.00041 * 10 8 6 14 14 C 1.34776 * 119.99965 * 4.32425 * 5 4 3 15 15 O 1.21779 * 120.00138 * 222.44965 * 14 5 4 16 16 C 1.46253 * 120.00132 * 42.45181 * 14 5 4 17 17 C 1.36849 * 126.83679 * 194.49082 * 16 14 5 18 18 N 1.33202 * 107.95464 * 180.02562 * 17 16 14 19 19 C 1.31542 * 109.77231 * 0.02562 * 18 17 16 20 20 O 1.35202 * 125.48690 * 180.02562 * 19 18 17 21 21 N 1.34983 * 109.03118 * 359.97438 * 19 18 17 22 22 C 1.46500 * 126.54691 * 180.26229 * 21 19 18 23 23 H 1.08998 * 109.47716 * 300.00476 * 1 2 3 24 24 H 1.09008 * 109.46964 * 60.00163 * 1 2 3 25 25 H 1.09001 * 109.47315 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46865 * 59.99600 * 3 2 1 27 27 H 1.08998 * 109.47041 * 299.99907 * 3 2 1 28 28 H 1.09000 * 109.47652 * 300.18563 * 4 3 2 29 29 H 1.09006 * 109.47018 * 180.17841 * 4 3 2 30 30 H 0.97000 * 119.99752 * 184.99649 * 9 8 6 31 31 H 1.08003 * 126.01828 * 0.02562 * 17 16 14 32 32 H 0.96700 * 114.00249 * 269.95543 * 20 19 18 33 33 H 1.09001 * 109.47328 * 236.82461 * 22 21 19 34 34 H 1.08998 * 109.47219 * 356.82473 * 22 21 19 35 35 H 1.09002 * 109.47632 * 116.82782 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9684 0.4613 -1.1975 6 6 5.2911 0.1533 -1.3705 7 1 5.9504 0.1046 -0.5165 8 6 5.7854 -0.0968 -2.6451 9 7 5.0871 0.2549 -3.7013 10 14 7.4425 -0.9327 -2.8568 11 1 7.2411 -2.3933 -3.0335 12 1 8.1269 -0.3792 -4.0528 13 1 8.2767 -0.6901 -1.6525 14 6 3.0646 0.0991 -2.1294 15 8 3.1232 -1.0062 -2.6372 16 6 2.0135 1.0334 -2.5308 17 6 0.8796 0.7383 -3.2379 18 7 0.1883 1.8660 -3.3947 19 6 0.8276 2.8631 -2.8224 20 8 0.4093 4.1483 -2.7904 21 7 1.9679 2.3963 -2.2712 22 6 2.9644 3.1777 -1.5345 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8565 0.6410 0.8892 29 1 3.9788 2.1805 0.0038 30 1 5.3969 0.0162 -4.5890 31 1 0.5955 -0.2372 -3.6043 32 1 0.7174 4.6810 -3.5363 33 1 3.9387 3.0646 -2.0099 34 1 2.6776 4.2292 -1.5395 35 1 3.0183 2.8206 -0.5061 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601624367.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:46 Heat of formation + Delta-G solvation = 60.764521 kcal Electronic energy + Delta-G solvation = -22815.846621 eV Core-core repulsion = 19435.092973 eV Total energy + Delta-G solvation = -3380.753649 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.40394 -38.68917 -37.01233 -36.90810 -35.15344 -33.50745 -31.94516 -29.26564 -28.64320 -26.78365 -25.57153 -24.77018 -23.12739 -21.53770 -21.00445 -19.00748 -18.31810 -17.34817 -16.83127 -16.58826 -15.87149 -15.03696 -14.82791 -14.77336 -14.31898 -13.91910 -13.71074 -13.67992 -13.17026 -12.87587 -12.29399 -11.91165 -11.88522 -11.53790 -11.38723 -11.27133 -11.04150 -10.89787 -10.64039 -10.55174 -10.20342 -9.70037 -9.44801 -9.08243 -8.54742 -8.41326 -7.73453 -7.37616 -6.26065 -3.76444 1.91557 2.76505 3.24460 3.30898 3.33326 3.36216 4.11874 4.18274 4.23465 4.55445 4.83307 5.04888 5.24196 5.35544 5.38528 5.44284 5.56373 5.69233 5.72135 5.79624 5.94181 5.99750 6.05945 6.10539 6.25361 6.39751 6.46541 6.87668 7.08894 7.45726 7.58977 7.85817 8.03223 8.33483 8.91173 9.19678 9.50516 10.06398 10.84925 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022648 B = 0.008478 C = 0.007735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.013394 B = 3301.816016 C = 3618.816281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.369 6.369 3 C -0.039 4.039 4 C 0.108 3.892 5 N -0.495 5.495 6 C -0.312 4.312 7 H 0.086 0.914 8 C 0.039 3.961 9 N -0.854 5.854 10 Si 0.919 3.081 11 H -0.278 1.278 12 H -0.287 1.287 13 H -0.273 1.273 14 C 0.614 3.386 15 O -0.515 6.515 16 C 0.007 3.993 17 C 0.023 3.977 18 N -0.486 5.486 19 C 0.346 3.654 20 O -0.445 6.445 21 N -0.436 5.436 22 C 0.017 3.983 23 H 0.031 0.969 24 H 0.041 0.959 25 H 0.082 0.918 26 H 0.042 0.958 27 H 0.116 0.884 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.270 0.730 31 H 0.179 0.821 32 H 0.394 0.606 33 H 0.098 0.902 34 H 0.080 0.920 35 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.224 8.044 4.968 10.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.287 6.287 3 C -0.116 4.116 4 C -0.015 4.015 5 N -0.222 5.222 6 C -0.438 4.438 7 H 0.104 0.896 8 C -0.167 4.167 9 N -0.493 5.493 10 Si 0.746 3.254 11 H -0.204 1.204 12 H -0.213 1.213 13 H -0.198 1.198 14 C 0.402 3.598 15 O -0.389 6.389 16 C -0.107 4.107 17 C -0.127 4.127 18 N -0.215 5.215 19 C 0.049 3.951 20 O -0.245 6.245 21 N -0.135 5.135 22 C -0.123 4.123 23 H 0.049 0.951 24 H 0.060 0.940 25 H 0.101 0.899 26 H 0.060 0.940 27 H 0.132 0.868 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.081 0.919 31 H 0.196 0.804 32 H 0.250 0.750 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -5.972 7.433 4.681 10.622 hybrid contribution 1.622 0.253 -0.159 1.649 sum -4.350 7.685 4.521 9.921 Atomic orbital electron populations 1.22674 0.81925 1.02288 0.99421 1.87992 1.18839 1.26813 1.95076 1.24933 0.94763 0.87462 1.04426 1.21894 0.91120 0.96976 0.91553 1.42798 1.06426 1.54359 1.18611 1.19199 0.82725 1.48697 0.93217 0.89616 1.25063 0.99160 0.97478 0.94993 1.69617 1.40607 1.40541 0.98496 0.86050 0.81700 0.80065 0.77552 1.20440 1.21297 1.19805 1.15548 0.78201 0.84690 0.81328 1.90597 1.70964 1.20271 1.57083 1.22037 1.01084 0.81979 1.05647 1.22239 0.91700 0.96973 1.01831 1.70156 1.31088 0.98704 1.21596 1.20161 0.86308 0.86774 1.01836 1.84773 1.73517 1.15822 1.50422 1.46120 1.17616 1.09090 1.40671 1.23661 0.92621 0.95373 1.00685 0.95083 0.94025 0.89945 0.93976 0.86784 0.92066 0.90730 0.91910 0.80375 0.75007 0.88321 0.90128 0.85813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 11.01 101.05 1.11 1.66 16 2 O -0.37 -7.41 8.77 -35.23 -0.31 -7.72 16 3 C -0.04 -0.69 3.86 37.16 0.14 -0.55 16 4 C 0.11 2.06 5.30 -4.04 -0.02 2.04 16 5 N -0.50 -12.14 2.59 -117.29 -0.30 -12.44 16 6 C -0.31 -8.20 9.55 -15.01 -0.14 -8.34 16 7 H 0.09 2.13 7.88 -52.48 -0.41 1.71 16 8 C 0.04 1.06 4.80 -17.46 -0.08 0.98 16 9 N -0.85 -24.34 10.91 55.50 0.61 -23.73 16 10 Si 0.92 21.22 29.59 -169.99 -5.03 16.19 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 13 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 14 C 0.61 15.98 3.56 -13.04 -0.05 15.94 16 15 O -0.51 -15.51 15.83 5.12 0.08 -15.43 16 16 C 0.01 0.16 4.33 -81.99 -0.35 -0.20 16 17 C 0.02 0.50 10.66 -17.46 -0.19 0.31 16 18 N -0.49 -9.62 11.22 -14.58 -0.16 -9.79 16 19 C 0.35 6.16 8.83 -89.55 -0.79 5.37 16 20 O -0.45 -6.14 13.25 -17.30 -0.23 -6.37 16 21 N -0.44 -8.09 1.71 -122.12 -0.21 -8.30 16 22 C 0.02 0.26 8.44 59.85 0.50 0.77 16 23 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 24 H 0.04 0.71 7.10 -51.92 -0.37 0.35 16 25 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 26 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.12 2.11 1.87 -108.17 -0.20 1.91 16 28 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.08 1.21 5.43 -51.93 -0.28 0.92 16 30 H 0.27 7.49 8.32 -40.82 -0.34 7.15 16 31 H 0.18 3.65 8.06 -52.48 -0.42 3.22 16 32 H 0.39 3.49 9.06 45.56 0.41 3.91 16 33 H 0.10 1.74 8.14 -51.93 -0.42 1.32 16 34 H 0.08 0.94 7.77 -51.93 -0.40 0.54 16 35 H 0.12 1.81 2.38 -53.11 -0.13 1.69 16 LS Contribution 284.11 15.07 4.28 4.28 Total: -1.00 -34.66 284.11 -4.20 -38.86 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -3.06 Total: 6.48 kcal Atomic # 6 Polarization: 17.84 SS G_CDS: 0.13 Total: 17.97 kcal Atomic # 7 Polarization: -54.19 SS G_CDS: -0.07 Total: -54.26 kcal Atomic # 8 Polarization: -29.06 SS G_CDS: -0.46 Total: -29.52 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -34.66 -4.20 -38.86 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601624367.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.620 kcal (2) G-P(sol) polarization free energy of solvation -34.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds