Wall clock time and date at job start Mon Mar 30 2020 00:49:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.42907 * 114.00019 * 2 1 4 4 C 1.52996 * 109.46974 * 179.97438 * 3 2 1 5 5 N 1.46500 * 109.46944 * 60.18762 * 4 3 2 6 6 C 1.36908 * 120.00036 * 184.32767 * 5 4 3 7 7 H 1.08003 * 120.00103 * 22.27669 * 6 5 4 8 8 C 1.38977 * 120.00118 * 202.27546 * 6 5 4 9 9 N 1.31414 * 119.99926 * 15.69900 * 8 6 5 10 10 Si 1.86800 * 120.00044 * 195.69390 * 8 6 5 11 11 H 1.48495 * 109.47293 * 95.00120 * 10 8 6 12 12 H 1.48497 * 109.47141 * 215.00064 * 10 8 6 13 13 H 1.48500 * 109.47029 * 335.00041 * 10 8 6 14 14 C 1.34776 * 119.99965 * 4.32425 * 5 4 3 15 15 O 1.21779 * 120.00138 * 222.44965 * 14 5 4 16 16 C 1.46253 * 120.00132 * 42.45181 * 14 5 4 17 17 C 1.36849 * 126.83679 * 194.49082 * 16 14 5 18 18 N 1.33202 * 107.95464 * 180.02562 * 17 16 14 19 19 C 1.31542 * 109.77231 * 0.02562 * 18 17 16 20 20 O 1.35202 * 125.48690 * 180.02562 * 19 18 17 21 21 N 1.34983 * 109.03118 * 359.97438 * 19 18 17 22 22 C 1.46500 * 126.54691 * 180.26229 * 21 19 18 23 23 H 1.08998 * 109.47716 * 300.00476 * 1 2 3 24 24 H 1.09008 * 109.46964 * 60.00163 * 1 2 3 25 25 H 1.09001 * 109.47315 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.46865 * 59.99600 * 3 2 1 27 27 H 1.08998 * 109.47041 * 299.99907 * 3 2 1 28 28 H 1.09000 * 109.47652 * 300.18563 * 4 3 2 29 29 H 1.09006 * 109.47018 * 180.17841 * 4 3 2 30 30 H 0.97000 * 119.99752 * 184.99649 * 9 8 6 31 31 H 1.08003 * 126.01828 * 0.02562 * 17 16 14 32 32 H 0.96700 * 114.00249 * 269.95543 * 20 19 18 33 33 H 1.09001 * 109.47328 * 236.82461 * 22 21 19 34 34 H 1.08998 * 109.47219 * 356.82473 * 22 21 19 35 35 H 1.09002 * 109.47632 * 116.82782 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 0.0006 5 7 3.9684 0.4613 -1.1975 6 6 5.2911 0.1533 -1.3705 7 1 5.9504 0.1046 -0.5165 8 6 5.7854 -0.0968 -2.6451 9 7 5.0871 0.2549 -3.7013 10 14 7.4425 -0.9327 -2.8568 11 1 7.2411 -2.3933 -3.0335 12 1 8.1269 -0.3792 -4.0528 13 1 8.2767 -0.6901 -1.6525 14 6 3.0646 0.0991 -2.1294 15 8 3.1232 -1.0062 -2.6372 16 6 2.0135 1.0334 -2.5308 17 6 0.8796 0.7383 -3.2379 18 7 0.1883 1.8660 -3.3947 19 6 0.8276 2.8631 -2.8224 20 8 0.4093 4.1483 -2.7904 21 7 1.9679 2.3963 -2.2712 22 6 2.9644 3.1777 -1.5345 23 1 -0.3634 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0277 -0.0005 26 1 1.6885 1.8464 0.8900 27 1 1.6886 1.8464 -0.8900 28 1 3.8565 0.6410 0.8892 29 1 3.9788 2.1805 0.0038 30 1 5.3969 0.0162 -4.5890 31 1 0.5955 -0.2372 -3.6043 32 1 0.7174 4.6810 -3.5363 33 1 3.9387 3.0646 -2.0099 34 1 2.6776 4.2292 -1.5395 35 1 3.0183 2.8206 -0.5061 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601624367.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:49:46 Heat of formation + Delta-G solvation = 31.677197 kcal Electronic energy + Delta-G solvation = -22817.107942 eV Core-core repulsion = 19435.092973 eV Total energy + Delta-G solvation = -3382.014970 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -43.90821 -40.33950 -38.60060 -38.19575 -36.78817 -35.24972 -33.77013 -30.88837 -30.26258 -28.10869 -27.02408 -26.57843 -24.75162 -23.06240 -22.45343 -20.75077 -19.67045 -18.98099 -18.43848 -18.11074 -17.31248 -16.65925 -16.53748 -16.35966 -15.85663 -15.50170 -15.29914 -15.08622 -14.82988 -14.41585 -13.68109 -13.56151 -13.43480 -13.14318 -12.92116 -12.76076 -12.73822 -12.61691 -12.31691 -12.06005 -11.90949 -11.26420 -10.99712 -10.80654 -10.42976 -9.96035 -9.34748 -9.27103 -8.27200 -5.79377 0.38063 1.29929 1.42097 1.48420 1.54090 1.77418 2.31755 2.69478 2.81338 2.88175 3.12727 3.30507 3.81054 3.89587 3.96602 4.15229 4.20292 4.37103 4.44550 4.49555 4.54405 4.62172 4.65328 4.76620 4.81304 4.94698 5.01729 5.42224 5.46006 5.69699 6.04477 6.27114 6.66128 6.78887 6.94222 7.29243 7.60217 8.14737 8.83091 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.022648 B = 0.008478 C = 0.007735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.013394 B = 3301.816016 C = 3618.816281 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.404 6.404 3 C -0.038 4.038 4 C 0.101 3.899 5 N -0.509 5.509 6 C -0.324 4.324 7 H 0.096 0.904 8 C -0.012 4.012 9 N -0.888 5.888 10 Si 0.978 3.022 11 H -0.296 1.296 12 H -0.284 1.284 13 H -0.250 1.250 14 C 0.615 3.385 15 O -0.577 6.577 16 C -0.021 4.021 17 C 0.025 3.975 18 N -0.504 5.504 19 C 0.378 3.622 20 O -0.434 6.434 21 N -0.431 5.431 22 C 0.015 3.985 23 H 0.058 0.942 24 H 0.029 0.971 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.063 0.937 29 H 0.110 0.890 30 H 0.262 0.738 31 H 0.172 0.828 32 H 0.423 0.577 33 H 0.073 0.927 34 H 0.125 0.875 35 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.555 10.480 6.364 13.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.323 6.323 3 C -0.115 4.115 4 C -0.021 4.021 5 N -0.235 5.235 6 C -0.451 4.451 7 H 0.114 0.886 8 C -0.214 4.214 9 N -0.527 5.527 10 Si 0.803 3.197 11 H -0.223 1.223 12 H -0.210 1.210 13 H -0.173 1.173 14 C 0.406 3.594 15 O -0.456 6.456 16 C -0.136 4.136 17 C -0.126 4.126 18 N -0.234 5.234 19 C 0.079 3.921 20 O -0.238 6.238 21 N -0.130 5.130 22 C -0.124 4.124 23 H 0.077 0.923 24 H 0.047 0.953 25 H 0.107 0.893 26 H 0.096 0.904 27 H 0.129 0.871 28 H 0.081 0.919 29 H 0.127 0.873 30 H 0.072 0.928 31 H 0.189 0.811 32 H 0.283 0.717 33 H 0.092 0.908 34 H 0.144 0.856 35 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -6.283 9.944 6.121 13.259 hybrid contribution 1.594 -0.373 -0.523 1.719 sum -4.689 9.571 5.597 12.038 Atomic orbital electron populations 1.22769 0.80298 1.03089 1.00051 1.87948 1.20772 1.28281 1.95297 1.24960 0.93587 0.87023 1.05899 1.22197 0.92578 0.98207 0.89134 1.42987 1.05695 1.55002 1.19822 1.19579 0.83804 1.48300 0.93418 0.88627 1.25911 1.02372 0.98143 0.94973 1.69733 1.42398 1.42156 0.98421 0.85138 0.78479 0.77692 0.78354 1.22273 1.20976 1.17338 1.15973 0.78454 0.84398 0.80543 1.90539 1.73052 1.22998 1.59057 1.21343 1.00929 0.83385 1.07931 1.22239 0.91756 0.97454 1.01174 1.70182 1.31560 0.98654 1.23020 1.20257 0.85060 0.87878 0.98886 1.84748 1.73240 1.13790 1.52008 1.46157 1.18264 1.07868 1.40675 1.23797 0.90974 0.97429 1.00208 0.92305 0.95251 0.89309 0.90352 0.87132 0.91892 0.87258 0.92831 0.81051 0.71661 0.90780 0.85644 0.84980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.07 11.01 113.37 1.25 2.32 16 2 O -0.40 -15.86 8.77 -148.98 -1.31 -17.17 16 3 C -0.04 -1.27 3.86 71.98 0.28 -1.00 16 4 C 0.10 3.67 5.30 86.38 0.46 4.13 16 5 N -0.51 -25.01 2.59 -643.19 -1.67 -26.68 16 6 C -0.32 -17.11 9.55 84.08 0.80 -16.31 16 7 H 0.10 4.69 7.88 -2.91 -0.02 4.67 16 8 C -0.01 -0.64 4.80 84.93 0.41 -0.24 16 9 N -0.89 -52.09 10.91 21.67 0.24 -51.85 16 10 Si 0.98 44.20 29.59 68.60 2.03 46.23 16 11 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 12 H -0.28 -12.53 7.11 99.48 0.71 -11.83 16 13 H -0.25 -10.21 7.11 99.48 0.71 -9.50 16 14 C 0.62 32.73 3.56 86.33 0.31 33.04 16 15 O -0.58 -36.39 15.83 -4.60 -0.07 -36.46 16 16 C -0.02 -0.94 4.33 39.80 0.17 -0.77 16 17 C 0.02 1.07 10.66 84.16 0.90 1.97 16 18 N -0.50 -19.26 11.22 -313.53 -3.52 -22.78 16 19 C 0.38 12.34 8.83 179.98 1.59 13.93 16 20 O -0.43 -9.95 13.25 -84.82 -1.12 -11.08 16 21 N -0.43 -15.12 1.71 -651.97 -1.12 -16.23 16 22 C 0.01 0.41 8.44 127.77 1.08 1.49 16 23 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 24 H 0.03 0.97 7.10 -2.38 -0.02 0.96 16 25 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 26 H 0.08 2.03 8.14 -2.39 -0.02 2.02 16 27 H 0.11 3.82 1.87 -113.44 -0.21 3.61 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H 0.11 3.22 5.43 -2.38 -0.01 3.20 16 30 H 0.26 15.11 8.32 -92.71 -0.77 14.34 16 31 H 0.17 7.36 8.06 -2.91 -0.02 7.34 16 32 H 0.42 5.33 9.06 -74.06 -0.67 4.66 16 33 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 34 H 0.13 2.31 7.77 -2.39 -0.02 2.29 16 35 H 0.13 3.41 2.38 -3.50 -0.01 3.40 16 Total: -1.00 -77.93 284.11 0.97 -76.96 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.27 Total: 20.50 kcal Atomic # 6 Polarization: 31.32 SS G_CDS: 7.24 Total: 38.56 kcal Atomic # 7 Polarization: -111.48 SS G_CDS: -6.06 Total: -117.55 kcal Atomic # 8 Polarization: -62.20 SS G_CDS: -2.50 Total: -64.71 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 2.03 Total: 46.23 kcal Total: -77.93 0.97 -76.96 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601624367.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.641 kcal (2) G-P(sol) polarization free energy of solvation -77.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.965 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds