Wall clock time and date at job start Mon Mar 30 2020 00:39:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46959 * 2 1 4 4 C 1.53001 * 109.47177 * 119.99900 * 2 1 3 5 5 C 1.50707 * 109.47047 * 294.99744 * 4 2 1 6 6 H 1.08004 * 120.00051 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99841 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00098 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99751 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46898 * 90.00143 * 9 7 5 11 11 H 1.48498 * 109.46839 * 209.99889 * 9 7 5 12 12 H 1.48492 * 109.47160 * 329.99750 * 9 7 5 13 13 C 1.52995 * 109.46979 * 240.00331 * 2 1 3 14 14 N 1.46896 * 109.47597 * 65.27173 * 13 2 1 15 15 C 1.48552 * 111.00023 * 75.60468 * 14 13 2 16 16 C 1.54379 * 104.59705 * 159.03867 * 15 14 13 17 17 F 1.39906 * 110.32272 * 95.04173 * 16 15 14 18 18 F 1.39899 * 110.32904 * 217.24955 * 16 15 14 19 19 C 1.54257 * 105.05875 * 336.15171 * 16 15 14 20 20 F 1.39908 * 110.32207 * 241.10081 * 19 16 15 21 21 F 1.39906 * 110.41312 * 118.93965 * 19 16 15 22 22 C 1.48563 * 111.00058 * 191.02478 * 14 13 2 23 23 H 1.08994 * 109.47151 * 65.28788 * 1 2 3 24 24 H 1.09004 * 109.46747 * 185.29028 * 1 2 3 25 25 H 1.09000 * 109.46956 * 305.28572 * 1 2 3 26 26 H 1.08991 * 109.47233 * 54.99927 * 4 2 1 27 27 H 1.08995 * 109.46811 * 175.00463 * 4 2 1 28 28 H 0.96995 * 120.00325 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.46963 * 305.26660 * 13 2 1 30 30 H 1.09005 * 109.46832 * 185.27649 * 13 2 1 31 31 H 1.08996 * 110.41321 * 277.82153 * 15 14 13 32 32 H 1.09001 * 110.41149 * 40.26142 * 15 14 13 33 33 H 1.09001 * 110.41197 * 319.73672 * 22 14 13 34 34 H 1.08999 * 110.41118 * 82.06097 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0800 0.9743 2.3757 7 6 1.9934 -0.4016 3.7283 8 7 2.6774 -1.5181 3.8511 9 14 1.4986 0.5629 5.2496 10 1 0.1718 0.0936 5.7234 11 1 2.5082 0.3536 6.3183 12 1 1.4227 2.0080 4.9166 13 6 2.0400 -0.7212 -1.2492 14 7 1.6570 0.0409 -2.4453 15 6 2.5149 1.2427 -2.6081 16 6 2.3853 1.6138 -4.1010 17 9 1.3949 2.5864 -4.2757 18 9 3.6108 2.0725 -4.5960 19 6 1.9793 0.3032 -4.8060 20 9 2.9491 -0.0639 -5.7452 21 9 0.7337 0.4485 -5.4265 22 6 1.8979 -0.7496 -3.6799 23 1 -0.3633 0.4296 -0.9335 24 1 -0.3633 -1.0233 0.0948 25 1 -0.3633 0.5936 0.8389 26 1 1.6055 -1.7197 1.2952 27 1 3.1263 -0.7993 1.2056 28 1 2.9253 -1.8406 4.7316 29 1 1.6016 -1.7180 -1.2977 30 1 3.1259 -0.8037 -1.2032 31 1 2.1517 2.0568 -1.9810 32 1 3.5506 1.0064 -2.3637 33 1 2.8370 -1.2976 -3.6033 34 1 1.0710 -1.4369 -3.8586 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602692188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:25 Heat of formation + Delta-G solvation = -201.122327 kcal Electronic energy + Delta-G solvation = -21489.522958 eV Core-core repulsion = 17535.636341 eV Total energy + Delta-G solvation = -3953.886617 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.110 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -49.94857 -48.72527 -47.94920 -47.04845 -38.81188 -35.15556 -32.39428 -30.07966 -29.04327 -26.89988 -25.59996 -23.45839 -21.97962 -21.91922 -19.18446 -18.69206 -18.39704 -17.06001 -16.94502 -16.41430 -16.33298 -15.32872 -14.81687 -14.63604 -14.46940 -14.36533 -14.21335 -13.93237 -13.82801 -13.73353 -13.58656 -13.06811 -12.76134 -12.46120 -12.20407 -12.18362 -11.55161 -11.39589 -10.93499 -10.89013 -10.84685 -10.44896 -10.37048 -9.80493 -9.28259 -9.09436 -8.82459 -8.39445 -6.04326 -4.05855 2.42014 3.09370 3.20868 3.27363 3.29539 3.36330 3.39297 3.59943 4.00648 4.34636 4.43238 4.46105 4.96307 5.01752 5.18845 5.25598 5.32309 5.45417 5.56458 5.91894 6.08628 6.17763 6.37934 6.59750 6.63364 6.94420 7.10273 7.11959 7.58681 7.72762 7.94625 8.37728 9.00206 9.58348 11.07149 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.036480 B = 0.004144 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.361871 B = 6755.931340 C = 6875.519102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.079 4.079 3 H 0.057 0.943 4 C 0.027 3.973 5 C -0.514 4.514 6 H 0.057 0.943 7 C 0.057 3.943 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.048 3.952 14 N -0.491 5.491 15 C -0.002 4.002 16 C 0.255 3.745 17 F -0.166 7.166 18 F -0.174 7.174 19 C 0.255 3.745 20 F -0.175 7.175 21 F -0.167 7.167 22 C -0.004 4.004 23 H 0.044 0.956 24 H 0.042 0.958 25 H 0.055 0.945 26 H 0.018 0.982 27 H 0.013 0.987 28 H 0.260 0.740 29 H 0.083 0.917 30 H 0.046 0.954 31 H 0.127 0.873 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.131 2.579 -16.483 16.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.098 4.098 3 H 0.076 0.924 4 C -0.010 4.010 5 C -0.553 4.553 6 H 0.075 0.925 7 C -0.144 4.144 8 N -0.536 5.536 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C -0.079 4.079 14 N -0.216 5.216 15 C -0.130 4.130 16 C 0.216 3.784 17 F -0.147 7.147 18 F -0.155 7.155 19 C 0.217 3.783 20 F -0.155 7.155 21 F -0.147 7.147 22 C -0.133 4.133 23 H 0.064 0.936 24 H 0.061 0.939 25 H 0.074 0.926 26 H 0.036 0.964 27 H 0.032 0.968 28 H 0.070 0.930 29 H 0.101 0.899 30 H 0.064 0.936 31 H 0.145 0.855 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -0.617 2.622 -16.331 16.551 hybrid contribution 0.666 0.377 0.509 0.919 sum 0.049 2.999 -15.822 16.104 Atomic orbital electron populations 1.21621 0.95393 1.01021 1.00329 1.21212 0.96309 0.99122 0.93155 0.92416 1.19144 0.95974 0.95638 0.90290 1.21197 1.34793 1.08398 0.90870 0.92507 1.25008 0.95217 0.95078 0.99135 1.69953 1.38901 1.21266 1.23501 0.86622 0.78268 0.80432 0.82869 1.20670 1.21300 1.19882 1.22699 0.98848 0.97647 0.88677 1.65681 1.49136 1.04967 1.01799 1.24231 1.00054 0.98260 0.90477 1.22539 0.74364 0.84845 0.96607 1.93111 1.60922 1.64286 1.96342 1.93094 1.43203 1.90003 1.89174 1.22520 0.74427 0.95717 0.85672 1.93094 1.62552 1.92321 1.67578 1.93107 1.41151 1.96346 1.84113 1.24172 1.05578 0.95018 0.88491 0.93647 0.93879 0.92639 0.96411 0.96819 0.93024 0.89877 0.93605 0.85475 0.89107 0.89356 0.85851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.25 8.86 37.16 0.33 -1.92 16 2 C -0.08 -1.45 2.40 -90.62 -0.22 -1.67 16 3 H 0.06 1.07 7.33 -51.93 -0.38 0.69 16 4 C 0.03 0.64 4.45 -27.88 -0.12 0.52 16 5 C -0.51 -13.75 8.47 -34.44 -0.29 -14.05 16 6 H 0.06 1.49 7.06 -52.48 -0.37 1.12 16 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 8 N -0.90 -26.09 13.29 55.43 0.74 -25.36 16 9 Si 0.89 21.12 29.54 -169.99 -5.02 16.10 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.19 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 12 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 13 C 0.05 0.69 4.22 -3.83 -0.02 0.68 16 14 N -0.49 -6.22 4.71 -229.98 -1.08 -7.31 16 15 C 0.00 -0.02 5.53 -2.19 -0.01 -0.03 16 16 C 0.25 3.15 2.70 -25.35 -0.07 3.08 16 17 F -0.17 -2.27 16.48 2.25 0.04 -2.24 16 18 F -0.17 -2.22 16.48 2.25 0.04 -2.18 16 19 C 0.25 3.03 2.70 -25.35 -0.07 2.96 16 20 F -0.17 -2.13 16.48 2.25 0.04 -2.09 16 21 F -0.17 -2.17 16.49 2.25 0.04 -2.14 16 22 C 0.00 -0.04 6.04 -2.18 -0.01 -0.05 16 23 H 0.04 0.73 7.62 -51.93 -0.40 0.33 16 24 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 25 H 0.05 1.07 7.11 -51.93 -0.37 0.70 16 26 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 29 H 0.08 1.17 8.07 -51.93 -0.42 0.75 16 30 H 0.05 0.64 7.74 -51.93 -0.40 0.24 16 31 H 0.13 1.51 7.73 -51.93 -0.40 1.11 16 32 H 0.09 0.98 7.72 -51.93 -0.40 0.58 16 33 H 0.09 0.80 7.98 -51.93 -0.41 0.38 16 34 H 0.12 1.15 8.12 -51.93 -0.42 0.73 16 LS Contribution 294.82 15.07 4.44 4.44 Total: -1.00 -28.85 294.82 -5.73 -34.59 By element: Atomic # 1 Polarization: -0.42 SS G_CDS: -4.38 Total: -4.80 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -0.58 Total: -9.02 kcal Atomic # 7 Polarization: -32.32 SS G_CDS: -0.35 Total: -32.66 kcal Atomic # 9 Polarization: -8.79 SS G_CDS: 0.15 Total: -8.65 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -28.85 -5.73 -34.59 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602692188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.536 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -201.122 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds