Wall clock time and date at job start Mon Mar 30 2020 00:39:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46959 * 2 1 4 4 C 1.53001 * 109.47177 * 119.99900 * 2 1 3 5 5 C 1.50707 * 109.47047 * 294.99744 * 4 2 1 6 6 H 1.08004 * 120.00051 * 0.02562 * 5 4 2 7 7 C 1.37876 * 119.99841 * 180.02562 * 5 4 2 8 8 N 1.31515 * 120.00098 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99751 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.46898 * 90.00143 * 9 7 5 11 11 H 1.48498 * 109.46839 * 209.99889 * 9 7 5 12 12 H 1.48492 * 109.47160 * 329.99750 * 9 7 5 13 13 C 1.52995 * 109.46979 * 240.00331 * 2 1 3 14 14 N 1.46896 * 109.47597 * 65.27173 * 13 2 1 15 15 C 1.48552 * 111.00023 * 75.60468 * 14 13 2 16 16 C 1.54379 * 104.59705 * 159.03867 * 15 14 13 17 17 F 1.39906 * 110.32272 * 95.04173 * 16 15 14 18 18 F 1.39899 * 110.32904 * 217.24955 * 16 15 14 19 19 C 1.54257 * 105.05875 * 336.15171 * 16 15 14 20 20 F 1.39908 * 110.32207 * 241.10081 * 19 16 15 21 21 F 1.39906 * 110.41312 * 118.93965 * 19 16 15 22 22 C 1.48563 * 111.00058 * 191.02478 * 14 13 2 23 23 H 1.08994 * 109.47151 * 65.28788 * 1 2 3 24 24 H 1.09004 * 109.46747 * 185.29028 * 1 2 3 25 25 H 1.09000 * 109.46956 * 305.28572 * 1 2 3 26 26 H 1.08991 * 109.47233 * 54.99927 * 4 2 1 27 27 H 1.08995 * 109.46811 * 175.00463 * 4 2 1 28 28 H 0.96995 * 120.00325 * 179.97438 * 8 7 5 29 29 H 1.09004 * 109.46963 * 305.26660 * 13 2 1 30 30 H 1.09005 * 109.46832 * 185.27649 * 13 2 1 31 31 H 1.08996 * 110.41321 * 277.82153 * 15 14 13 32 32 H 1.09001 * 110.41149 * 40.26142 * 15 14 13 33 33 H 1.09001 * 110.41197 * 319.73672 * 22 14 13 34 34 H 1.08999 * 110.41118 * 82.06097 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 1.6414 0.0572 2.4766 6 1 1.0800 0.9743 2.3757 7 6 1.9934 -0.4016 3.7283 8 7 2.6774 -1.5181 3.8511 9 14 1.4986 0.5629 5.2496 10 1 0.1718 0.0936 5.7234 11 1 2.5082 0.3536 6.3183 12 1 1.4227 2.0080 4.9166 13 6 2.0400 -0.7212 -1.2492 14 7 1.6570 0.0409 -2.4453 15 6 2.5149 1.2427 -2.6081 16 6 2.3853 1.6138 -4.1010 17 9 1.3949 2.5864 -4.2757 18 9 3.6108 2.0725 -4.5960 19 6 1.9793 0.3032 -4.8060 20 9 2.9491 -0.0639 -5.7452 21 9 0.7337 0.4485 -5.4265 22 6 1.8979 -0.7496 -3.6799 23 1 -0.3633 0.4296 -0.9335 24 1 -0.3633 -1.0233 0.0948 25 1 -0.3633 0.5936 0.8389 26 1 1.6055 -1.7197 1.2952 27 1 3.1263 -0.7993 1.2056 28 1 2.9253 -1.8406 4.7316 29 1 1.6016 -1.7180 -1.2977 30 1 3.1259 -0.8037 -1.2032 31 1 2.1517 2.0568 -1.9810 32 1 3.5506 1.0064 -2.3637 33 1 2.8370 -1.2976 -3.6033 34 1 1.0710 -1.4369 -3.8586 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602692188.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 00:39:24 Heat of formation + Delta-G solvation = -217.936702 kcal Electronic energy + Delta-G solvation = -21490.252084 eV Core-core repulsion = 17535.636341 eV Total energy + Delta-G solvation = -3954.615743 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.110 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -50.92098 -49.70320 -48.93210 -48.03361 -39.86453 -36.70515 -34.30449 -31.30964 -29.95015 -28.70977 -26.87551 -25.02184 -23.19049 -22.92915 -20.62262 -19.67213 -19.42297 -18.43660 -18.03534 -17.81955 -17.40468 -16.62830 -16.21950 -15.83406 -15.61676 -15.53406 -15.22003 -15.03665 -14.85637 -14.76426 -14.72678 -14.36049 -14.25135 -13.73530 -13.50633 -13.25218 -13.11682 -12.84611 -12.72166 -12.51123 -12.19365 -12.04172 -11.83623 -11.40483 -11.06167 -10.93031 -10.49858 -9.84034 -8.15238 -6.22882 1.42435 1.43096 1.48235 1.53269 2.11041 2.27932 2.35884 2.44662 2.65007 3.04589 3.19383 3.42216 3.55970 3.92399 4.11871 4.26760 4.34363 4.42872 4.46522 4.54072 4.80028 4.83416 5.01033 5.28690 5.36753 5.46825 5.53894 5.57064 5.68771 5.86753 5.93244 6.33888 6.93571 7.45485 8.96453 Molecular weight = 269.11amu Principal moments of inertia in cm(-1) A = 0.036480 B = 0.004144 C = 0.004071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.361871 B = 6755.931340 C = 6875.519102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.071 4.071 3 H 0.057 0.943 4 C 0.032 3.968 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.001 3.999 8 N -0.934 5.934 9 Si 0.954 3.046 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.265 1.265 13 C 0.060 3.940 14 N -0.499 5.499 15 C -0.001 4.001 16 C 0.252 3.748 17 F -0.176 7.176 18 F -0.177 7.177 19 C 0.255 3.745 20 F -0.176 7.176 21 F -0.174 7.174 22 C 0.002 3.998 23 H 0.066 0.934 24 H 0.039 0.961 25 H 0.035 0.965 26 H -0.005 1.005 27 H -0.008 1.008 28 H 0.261 0.739 29 H 0.090 0.910 30 H 0.051 0.949 31 H 0.126 0.874 32 H 0.104 0.896 33 H 0.109 0.891 34 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.423 2.955 -17.079 17.338 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.090 4.090 3 H 0.075 0.925 4 C -0.006 4.006 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.196 4.196 8 N -0.575 5.575 9 Si 0.780 3.220 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.189 1.189 13 C -0.067 4.067 14 N -0.224 5.224 15 C -0.130 4.130 16 C 0.214 3.786 17 F -0.156 7.156 18 F -0.158 7.158 19 C 0.217 3.783 20 F -0.157 7.157 21 F -0.155 7.155 22 C -0.127 4.127 23 H 0.085 0.915 24 H 0.058 0.942 25 H 0.054 0.946 26 H 0.013 0.987 27 H 0.011 0.989 28 H 0.070 0.930 29 H 0.109 0.891 30 H 0.070 0.930 31 H 0.144 0.856 32 H 0.122 0.878 33 H 0.127 0.873 34 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -0.917 3.011 -16.945 17.235 hybrid contribution 0.768 0.272 0.641 1.037 sum -0.149 3.283 -16.304 16.632 Atomic orbital electron populations 1.21532 0.94863 1.00583 1.00573 1.20992 0.96606 0.98718 0.92711 0.92503 1.19032 0.94498 0.94783 0.92296 1.21643 1.34141 1.08554 0.92146 0.92297 1.25848 0.95361 0.96032 1.02377 1.70073 1.40319 1.22898 1.24178 0.85609 0.77923 0.79395 0.79118 1.20125 1.21133 1.18921 1.22397 0.99049 0.97450 0.87770 1.65554 1.49540 1.05310 1.01959 1.24262 1.00715 0.97974 0.90034 1.22666 0.74022 0.84840 0.97038 1.93091 1.61340 1.64784 1.96423 1.93087 1.43370 1.90084 1.89243 1.22609 0.74017 0.95773 0.85874 1.93093 1.62572 1.92292 1.67715 1.93094 1.41669 1.96402 1.84329 1.24256 1.07410 0.94482 0.86518 0.91507 0.94222 0.94575 0.98686 0.98924 0.93025 0.89144 0.93031 0.85620 0.87801 0.87324 0.84253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.07 8.86 71.98 0.64 -3.43 16 2 C -0.07 -2.55 2.40 -10.79 -0.03 -2.57 16 3 H 0.06 2.04 7.33 -2.39 -0.02 2.02 16 4 C 0.03 1.51 4.45 29.85 0.13 1.64 16 5 C -0.53 -28.26 8.47 25.60 0.22 -28.04 16 6 H 0.06 3.07 7.06 -2.91 -0.02 3.05 16 7 C 0.00 0.07 5.46 84.65 0.46 0.53 16 8 N -0.93 -54.98 13.29 21.45 0.28 -54.70 16 9 Si 0.95 43.23 29.54 68.60 2.03 45.26 16 10 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 11 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 13 C 0.06 1.62 4.22 86.30 0.36 1.99 16 14 N -0.50 -11.39 4.71 -881.53 -4.15 -15.54 16 15 C 0.00 -0.03 5.53 86.45 0.48 0.45 16 16 C 0.25 5.80 2.70 31.49 0.09 5.88 16 17 F -0.18 -4.58 16.48 44.97 0.74 -3.84 16 18 F -0.18 -4.24 16.48 44.97 0.74 -3.50 16 19 C 0.26 5.50 2.70 31.49 0.08 5.59 16 20 F -0.18 -3.91 16.48 44.97 0.74 -3.17 16 21 F -0.17 -4.23 16.49 44.97 0.74 -3.49 16 22 C 0.00 0.03 6.04 86.45 0.52 0.55 16 23 H 0.07 2.01 7.62 -2.39 -0.02 1.99 16 24 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 25 H 0.04 1.35 7.11 -2.39 -0.02 1.34 16 26 H -0.01 -0.27 8.14 -2.39 -0.02 -0.29 16 27 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 28 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 29 H 0.09 2.33 8.07 -2.39 -0.02 2.31 16 30 H 0.05 1.34 7.74 -2.38 -0.02 1.32 16 31 H 0.13 2.77 7.73 -2.39 -0.02 2.75 16 32 H 0.10 1.99 7.72 -2.39 -0.02 1.97 16 33 H 0.11 1.58 7.98 -2.39 -0.02 1.56 16 34 H 0.14 2.12 8.12 -2.39 -0.02 2.10 16 Total: -1.00 -61.08 294.82 5.19 -55.90 By element: Atomic # 1 Polarization: -0.61 SS G_CDS: 1.11 Total: 0.50 kcal Atomic # 6 Polarization: -20.37 SS G_CDS: 2.96 Total: -17.41 kcal Atomic # 7 Polarization: -66.38 SS G_CDS: -3.87 Total: -70.24 kcal Atomic # 9 Polarization: -16.96 SS G_CDS: 2.96 Total: -14.00 kcal Atomic # 14 Polarization: 43.23 SS G_CDS: 2.03 Total: 45.26 kcal Total: -61.08 5.19 -55.90 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602692188.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.040 kcal (2) G-P(sol) polarization free energy of solvation -61.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -223.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -217.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds